ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19h18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FAD6E_BRAJU (Q39287) Omega-6 fatty acid desaturase, endoplasmic ... 62 7e-10
2FD6E2_SOYBN (P48631) Omega-6 fatty acid desaturase, endoplasmic ... 57 2e-08
3FD6E1_SOYBN (P48630) Omega-6 fatty acid desaturase, endoplasmic ... 56 5e-08
4FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic ... 55 7e-08
5FAD12_CREAL (O81931) Delta(12) fatty acid dehydrogenase (EC 1.14... 52 1e-06
6TTC7B_HUMAN (Q86TV6) Tetratricopeptide repeat protein 7B (Tetrat... 29 5.2

>FAD6E_BRAJU (Q39287) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC|
           1.14.19.-) (Delta-12 desaturase)
          Length = 384

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 27/37 (72%), Positives = 31/37 (83%), Gaps = 3/37 (8%)
 Frame = -3

Query: 466 FDGTPVAKATWREAKECIYVEPE---DRKGVFWYSNK 365
           FDGTP  KA WREAKECIYVEP+   ++KGVFWY+NK
Sbjct: 347 FDGTPWVKAMWREAKECIYVEPDRQGEKKGVFWYNNK 383



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>FD6E2_SOYBN (P48631) Omega-6 fatty acid desaturase, endoplasmic reticulum|
           isozyme 2 (EC 1.14.19.-)
          Length = 383

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 25/37 (67%), Positives = 29/37 (78%), Gaps = 3/37 (8%)
 Frame = -3

Query: 466 FDGTPVAKATWREAKECIYVEPE---DRKGVFWYSNK 365
           FD TP  KA WREA+ECIYVEP+   + KGVFWY+NK
Sbjct: 346 FDETPFVKAMWREARECIYVEPDQSTESKGVFWYNNK 382



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>FD6E1_SOYBN (P48630) Omega-6 fatty acid desaturase, endoplasmic reticulum|
           isozyme 1 (EC 1.14.19.-)
          Length = 387

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 3/38 (7%)
 Frame = -3

Query: 466 FDGTPVAKATWREAKECIYVEPED---RKGVFWYSNKF 362
           FD TP  KA WREA+EC+YVEP++    KGV+WY NK+
Sbjct: 350 FDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNKY 387



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>FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC|
           1.14.19.-) (Delta-12 desaturase)
          Length = 383

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 25/37 (67%), Positives = 30/37 (81%), Gaps = 3/37 (8%)
 Frame = -3

Query: 466 FDGTPVAKATWREAKECIYVEPE---DRKGVFWYSNK 365
           FDGTP   A +REAKECIYVEP+   D+KGV+WY+NK
Sbjct: 346 FDGTPWYVAMYREAKECIYVEPDREGDKKGVYWYNNK 382



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>FAD12_CREAL (O81931) Delta(12) fatty acid dehydrogenase (EC 1.14.99.33)|
           (Crepenynate synthase) (Delta-12 fatty acid acetylenase)
          Length = 375

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 24/37 (64%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
 Frame = -3

Query: 463 DGTPVAKATWREAKECIYVEPE---DRKGVFWYSNKF 362
           D TP+ KA WREAKECI++EPE     KGV+WY NKF
Sbjct: 340 DRTPILKAMWREAKECIFIEPEKGRGSKGVYWY-NKF 375



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>TTC7B_HUMAN (Q86TV6) Tetratricopeptide repeat protein 7B (Tetratricopeptide|
           repeat protein 7-like-1)
          Length = 741

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 267 KLTICR*MDGLLVRTSSLSSSWNTADDDPCG*NLLLYQKTPLRSSGST*MHSLASR 434
           ++TI R +  +L+R     S WN  +D PC   L      PLR   +T  ++L  R
Sbjct: 156 RMTIARQLAEILLRGMCEQSYWNPLEDPPCQSPL----DDPLRKGANTKTYTLTRR 207


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,397,614
Number of Sequences: 219361
Number of extensions: 950444
Number of successful extensions: 2286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2282
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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