| Clone Name | rbags19h17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY107857.1| Zea mays PCO113823 mRNA sequence Length = 677 Score = 167 bits (84), Expect = 5e-38 Identities = 159/184 (86%) Strand = Plus / Minus Query: 339 tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 398 ||||||||| |||| |||||||| |||||||||||||||||||||||||| |||| ||| Sbjct: 352 tgagctttaaatgataaaatcacattccatgcaagggctacaaaattagcaccaaggacc 293 Query: 399 tggagcttctgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaa 458 || | |||||| || || || || |||||||||||||| || |||||||| ||||||||| Sbjct: 292 tgaaacttctgaggaacgaagtaaaaattcaaaaactgaaatggtatccataattgccaa 233 Query: 459 ttcgcgatcaatgaagagaaccactcctgcttaagctttggcactacaagtgatggcttt 518 ||||| | || ||| || ||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 232 ttcgccaacactgatgataaccattcctgcttaagctttggcaccacaagagagggcttt 173 Query: 519 ccct 522 |||| Sbjct: 172 ccct 169
>gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0035B18, complete sequence Length = 123425 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 408 tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 467 ||||||||||| || |||||||| ||||| || ||||||||||||||||||||||| ||| Sbjct: 50780 tgtgggacaaagtaaaaattcaagaactgaaagggtatccacaattgccaattcgcaatc 50839 Query: 468 aatgaagagaaccactcctg 487 | ||| || ||||||||||| Sbjct: 50840 actgatgataaccactcctg 50859 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 339 tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 398 ||||||||| |||| | |||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 50575 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 50634 Query: 399 tgga 402 |||| Sbjct: 50635 tgga 50638
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 339 tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 398 ||||||||| |||| | |||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1336385 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 1336444 Query: 399 tgga 402 |||| Sbjct: 1336445 tgga 1336448 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 408 tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 467 ||||||||||| || |||||||| ||||| || |||||||||||||||||||| || ||| Sbjct: 1336594 tgtgggacaaagtaaaaattcaagaactgaaaaggtatccacaattgccaatttgcaatc 1336653 Query: 468 aatgaagagaaccactcctg 487 | ||| || ||||||||||| Sbjct: 1336654 actgatgataaccactcctg 1336673
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 408 tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 467 ||||||||||| || |||||||| ||||| || ||||||||||||||||||||||| ||| Sbjct: 1431985 tgtgggacaaagtaaaaattcaagaactgaaagggtatccacaattgccaattcgcaatc 1432044 Query: 468 aatgaagagaaccactcctg 487 | ||| || ||||||||||| Sbjct: 1432045 actgatgataaccactcctg 1432064 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 339 tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 398 ||||||||| |||| | |||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1431780 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 1431839 Query: 399 tgga 402 |||| Sbjct: 1431840 tgga 1431843
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 408 tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 467 ||||||||||| || |||||||| ||||| || ||||||||||||||||||||||| ||| Sbjct: 1429706 tgtgggacaaagtaaaaattcaagaactgaaagggtatccacaattgccaattcgcaatc 1429765 Query: 468 aatgaagagaaccactcctg 487 | ||| || ||||||||||| Sbjct: 1429766 actgatgataaccactcctg 1429785 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 339 tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 398 ||||||||| |||| | |||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1429501 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 1429560 Query: 399 tgga 402 |||| Sbjct: 1429561 tgga 1429564
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 339 tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 398 ||||||||| |||| | |||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1336385 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 1336444 Query: 399 tgga 402 |||| Sbjct: 1336445 tgga 1336448 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 408 tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 467 ||||||||||| || |||||||| ||||| || |||||||||||||||||||| || ||| Sbjct: 1336594 tgtgggacaaagtaaaaattcaagaactgaaaaggtatccacaattgccaatttgcaatc 1336653 Query: 468 aatgaagagaaccactcctg 487 | ||| || ||||||||||| Sbjct: 1336654 actgatgataaccactcctg 1336673
>emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157453 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 339 tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 398 ||||||||| |||| | |||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 92784 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 92725 Query: 399 tgga 402 |||| Sbjct: 92724 tgga 92721 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 408 tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 467 ||||||||||| || |||||||| ||||| || |||||||||||||||||||| || ||| Sbjct: 92575 tgtgggacaaagtaaaaattcaagaactgaaaaggtatccacaattgccaatttgcaatc 92516 Query: 468 aatgaagagaaccactcctg 487 | ||| || ||||||||||| Sbjct: 92515 actgatgataaccactcctg 92496
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 484 cctgcttaagctttggcactac 505 |||||||||||||||||||||| Sbjct: 15628 cctgcttaagctttggcactac 15607
>emb|AL390838.26| Human DNA sequence from clone RP11-158D2 on chromosome 9 Contains a novel pseudogene and a novel gene, complete sequence Length = 193709 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ggaaaccaggaacaagcttcca 84 |||||||||||||||||||||| Sbjct: 139517 ggaaaccaggaacaagcttcca 139496
>gb|AC026130.15| Homo sapiens chromosome 17, clone RP11-801J18, complete sequence Length = 182909 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ggaaaccaggaacaagcttcca 84 |||||||||||||||||||||| Sbjct: 41503 ggaaaccaggaacaagcttcca 41524
>gb|AC025518.8| Homo sapiens chromosome 17, clone RP11-713H12, complete sequence Length = 176355 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ggaaaccaggaacaagcttcca 84 |||||||||||||||||||||| Sbjct: 105267 ggaaaccaggaacaagcttcca 105288
>emb|CT025599.16| Mouse DNA sequence from clone RP24-254G12 on chromosome 14, complete sequence Length = 170436 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 411 gggacaaaatagaaattcaaaa 432 |||||||||||||||||||||| Sbjct: 64095 gggacaaaatagaaattcaaaa 64116
>gb|AC164607.4| Mus musculus chromosome 5, clone RP23-455A10, complete sequence Length = 183927 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 agaatattacattatgtaatt 58 ||||||||||||||||||||| Sbjct: 150610 agaatattacattatgtaatt 150630
>emb|AL445669.9| Human DNA sequence from clone RP11-163G10 on chromosome 1 Contains the 5' end of the ZMYND12 gene for zinc finger MYND domain containing 12, a novel gene, the 5' end of a novel gene, a ribosomal protein S3a (RPS3A) pseudogene, a thymosin, beta 4, X-linked (TMSB4X) pseudogene, a novel pseudogene (DC2) and two CpG islands, complete sequence Length = 153640 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 gaaaccaggaacaagcttcca 84 ||||||||||||||||||||| Sbjct: 51788 gaaaccaggaacaagcttcca 51768
>gb|AC154678.2| Mus musculus BAC clone RP24-302G10 from chromosome 16, complete sequence Length = 198982 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 gcttaagctttggcactacaa 507 ||||||||||||||||||||| Sbjct: 144741 gcttaagctttggcactacaa 144761
>gb|AC133584.12| Mus musculus chromosome 5, clone RP24-448L9, complete sequence Length = 165291 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 agaatattacattatgtaatt 58 ||||||||||||||||||||| Sbjct: 147977 agaatattacattatgtaatt 147957
>ref|XM_414355.1| PREDICTED: Gallus gallus similar to anion exchanger SLC26A6a (LOC416012), mRNA Length = 2560 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cctggagcttctgtgggaca 416 |||||||||||||||||||| Sbjct: 2396 cctggagcttctgtgggaca 2415
>gb|AC149486.1| Populus trichocarpa clone Pop1-8L22, complete sequence Length = 66066 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 caaaatagaaattcaaaaac 434 |||||||||||||||||||| Sbjct: 58748 caaaatagaaattcaaaaac 58729
>gb|AC149543.1| Populus trichocarpa clone Pop1-47M20, complete sequence Length = 68256 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 caaaatagaaattcaaaaac 434 |||||||||||||||||||| Sbjct: 34431 caaaatagaaattcaaaaac 34412
>gb|AC105947.11| Mus musculus chromosome 18, clone RP24-66N1, complete sequence Length = 207139 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tgacaaaatcacgttccatg 369 |||||||||||||||||||| Sbjct: 21479 tgacaaaatcacgttccatg 21498
>gb|AC122905.3| Mus musculus BAC clone RP23-47A1 from 10, complete sequence Length = 152690 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 aaatagaaattcaaaaactggaac 440 ||||||||||| |||||||||||| Sbjct: 36922 aaatagaaatttaaaaactggaac 36945
>emb|AL163206.2|HS21C006 Homo sapiens chromosome 21 segment HS21C006 Length = 340000 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ccaggaacaagcttccatca 87 |||||||||||||||||||| Sbjct: 437 ccaggaacaagcttccatca 418
>emb|AL135787.13| Human DNA sequence from clone RP11-16L21 on chromosome 9 Contains the 3' end of a variant of the gene for KIAA1962 protein similar to zinc finger protein HIT-10, the LTB4DH gene for leukotriene B4 12-hydroxydehydrogenase (MGC34943), the gene for KIAA0563-related gene (LOC286331), the GNG10 gene for guanine nucleotide binding protein (G protein), gamma 10, a novel gene, the 3' end of a novel gene and six CpG islands, complete sequence Length = 161448 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 caacaaaaaagatggacact 162 |||||||||||||||||||| Sbjct: 150039 caacaaaaaagatggacact 150058
>emb|AL121915.8|HSJ1193N1 Human DNA sequence from clone RP5-1193N1 on chromosome 20 Contains the LAMR1P1 gene for laminin receptor 1 pseudogene 1, complete sequence Length = 51859 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 gcggaaaccaggaacaagcttcca 84 |||||||||||| ||||||||||| Sbjct: 16731 gcggaaaccaggcacaagcttcca 16754
>emb|AL034408.2|HS710L4 Human DNA sequence from clone RP4-710L4 on chromosome Xq11.2-12 Contains the 5' end of the MTMR8 gene for myotubularin related protein 8, a SHC (Src homology 2 domain containing) transforming protein 1 (SHC1) pseudogene and a CpG island, complete sequence Length = 129849 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aaaccaggaacaagcttcca 84 |||||||||||||||||||| Sbjct: 33387 aaaccaggaacaagcttcca 33368
>gb|AC078906.6| Homo sapiens, clone RP11-142A23, complete sequence Length = 156426 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 aaaatagaaattcaaaaact 435 |||||||||||||||||||| Sbjct: 69194 aaaatagaaattcaaaaact 69175
>emb|BX930511.2| Gallus gallus finished cDNA, clone ChEST619h11 Length = 771 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cctggagcttctgtgggaca 416 |||||||||||||||||||| Sbjct: 589 cctggagcttctgtgggaca 608
>gb|AC137518.1| Genomic sequence for Arabidopsis thaliana, clone T7I7, from chromosome 5, complete sequence Length = 22832 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aatattacattatgtaattc 59 |||||||||||||||||||| Sbjct: 2833 aatattacattatgtaattc 2814
>gb|AF130358.2|AF130358 Homo sapiens chromosome 21q11.2 PAC 90B5, complete sequence Length = 197778 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ccaggaacaagcttccatca 87 |||||||||||||||||||| Sbjct: 124485 ccaggaacaagcttccatca 124466
>dbj|BS000009.1| Pan troglodytes chromosome 22 clone:PTB-118J15, map 22, complete sequences Length = 199914 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ccaggaacaagcttccatca 87 |||||||||||||||||||| Sbjct: 5171 ccaggaacaagcttccatca 5152
>ref|XM_309351.2| Anopheles gambiae str. PEST ENSANGP00000015015 (ENSANGG00000012526), partial mRNA Length = 1101 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 catgttgcaaccggccaggt 281 |||||||||||||||||||| Sbjct: 420 catgttgcaaccggccaggt 401
>ref|XM_564195.1| Anopheles gambiae str. PEST ENSANGP00000028864 (ENSANGG00000012526), mRNA Length = 2980 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 catgttgcaaccggccaggt 281 |||||||||||||||||||| Sbjct: 1258 catgttgcaaccggccaggt 1239
>ref|XM_564194.1| Anopheles gambiae str. PEST ENSANGP00000028392 (ENSANGG00000012526), mRNA Length = 2954 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 catgttgcaaccggccaggt 281 |||||||||||||||||||| Sbjct: 1232 catgttgcaaccggccaggt 1213
>gb|AC006556.3|AC006556 Homo sapiens, clone hRPK.37_A_1, complete sequence Length = 156833 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccaggaacaagcttccatca 87 |||||||||||||||||||| Sbjct: 2250 ccaggaacaagcttccatca 2269
>dbj|AP001376.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-775E2, complete sequence Length = 181300 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aaaagatggacactagttta 168 |||||||||||||||||||| Sbjct: 138179 aaaagatggacactagttta 138198
>dbj|AP000742.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-82B15, complete sequence Length = 166543 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aaaagatggacactagttta 168 |||||||||||||||||||| Sbjct: 41537 aaaagatggacactagttta 41556
>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ccaggaacaagcttccatca 87 |||||||||||||||||||| Sbjct: 339437 ccaggaacaagcttccatca 339418
>gb|AC124235.11| Mus musculus chromosome 13, clone RP23-273G24, complete sequence Length = 242383 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 tctgtgggacaaaatagaaa 425 |||||||||||||||||||| Sbjct: 42188 tctgtgggacaaaatagaaa 42169 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,631,104 Number of Sequences: 3902068 Number of extensions: 4631104 Number of successful extensions: 82037 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81871 Number of HSP's gapped (non-prelim): 166 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)