ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
2dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
3dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
4gb|AY109589.1| Zea mays CL7475_1 mRNA sequence 101 3e-18
5ref|XM_415002.1| PREDICTED: Gallus gallus sodium-calcium exchang... 48 0.039
6gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, co... 48 0.039
7gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, comp... 44 0.61
8gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete... 44 0.61
9gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, com... 44 0.61
10gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, comp... 44 0.61
11dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 44 0.61
12gb|AC114677.13| Mus musculus chromosome 18, clone RP24-213K19, c... 42 2.4
13gb|AC110217.10| Mus musculus chromosome 1, clone RP24-510P18, co... 42 2.4
14gb|AC123800.4| Mus musculus BAC clone RP24-343K18 from chromosom... 42 2.4
15gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome... 42 2.4
16emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on ch... 42 2.4
17gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, co... 42 2.4
18gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 42 2.4
19gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, compl... 42 2.4
20gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Ca... 42 2.4
21emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of... 42 2.4
22ref|NG_002375.1| Homo sapiens oligophrenin 1 pseudogene 1 (OPHN1... 42 2.4
23ref|NM_016173.3| Homo sapiens HemK methyltransferase family memb... 42 2.4
24gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137... 42 2.4
25gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complet... 42 2.4
26emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete s... 42 2.4
27gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, comple... 42 2.4
28gb|AF172244.1|AF172244 Homo sapiens HEMK homolog 7kb (HEMK) mRNA... 42 2.4
29emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on ch... 42 2.4
30emb|BX537562.1|HSM806176 Homo sapiens mRNA; cDNA DKFZp686I1369 (... 42 2.4
31emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-5... 42 2.4
32emb|Z74023.1|HSLUCA3 Human DNA sequence from clone XXcos-3 on ch... 42 2.4
33emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-2... 42 2.4
34dbj|AP000534.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 42 2.4
35ref|NM_186230.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.6
36gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, com... 40 9.6
37gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, co... 40 9.6
38ref|XM_817863.1| Trypanosoma brucei TREU927 hypothetical protein... 40 9.6
39emb|AJ865241.1| Cocos nucifera microsatellite DNA, clone CnCir 146 40 9.6
40gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, comple... 40 9.6
41gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 9.6
42gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete se... 40 9.6
43emb|BX908795.10| Zebrafish DNA sequence from clone DKEY-92J12 in... 40 9.6
44emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in ... 40 9.6
45dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, c... 40 9.6
46dbj|BS000596.1| Pan troglodytes chromosome Y clone:PTB-130H13, c... 40 9.6
47gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 9.6
48gb|AC160397.9| Mus musculus 6 BAC RP23-279I21 (Roswell Park Canc... 40 9.6
49ref|XM_496597.2| PREDICTED: Homo sapiens hypothetical protein LO... 40 9.6
50ref|XM_933134.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 9.6
51ref|XM_928770.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 9.6
52gb|AC151479.4| Pan troglodytes BAC clone CH251-656P8 from chromo... 40 9.6
53dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
54gb|AC064871.6| Homo sapiens BAC clone RP11-598C21 from 2, comple... 40 9.6
55gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Canc... 40 9.6
56gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complet... 40 9.6
57gb|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y... 40 9.6
58emb|BX005483.3| Zebrafish DNA sequence from clone CH211-286G12 i... 40 9.6
59gb|AC023271.11| Homo sapiens BAC clone RP11-96E8 from 2, complet... 40 9.6
60gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y... 40 9.6
61dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
62dbj|AP006749.3| Homo sapiens genomic DNA, chromosome 8q24.3, clo... 40 9.6
63emb|BX544880.3| Mouse DNA sequence from clone RP23-119F1 on chro... 40 9.6
64emb|CR855831.2| Xenopus tropicalis finished cDNA, clone TTpA003p15 40 9.6
65emb|CR450723.12| Zebrafish DNA sequence from clone DKEY-47C8 in ... 40 9.6
66emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chro... 40 9.6 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                            
Query: 199      tccaaagccttctttggagtcccatcaccgtgttacaaatggcaggaggtagtgccaagt 258
                ||||||||||||||||| || |||||||  ||||| ||||| ||||||||||  | ||||
Sbjct: 38047335 tccaaagccttctttggggtaccatcactatgttagaaatgacaggaggtagcactaagt 38047276

                                                                            
Query: 259      gccaaaaactaacattagcactcct--gaacctgtctctgatgaggggcacaggctctcc 316
                ||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||||
Sbjct: 38047275 gccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcacaggctctcc 38047216

                                                              
Query: 317      ttagagcctgagccacctagatgcaagctataaactgaaggataaa 362
                ||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct: 38047215 ttagagccttaaccacctagatgcaagctataaactggaagataaa 38047170



 Score =  107 bits (54), Expect = 5e-20
 Identities = 91/101 (90%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                            
Query: 73       tcctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtg 130
                |||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |
Sbjct: 38047468 tcctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccg 38047409

                                                         
Query: 131      acccaagacaataaaa-atatgcctgggtccattggggtta 170
                |||||||||||||||| ||||   |||||||||||||||||
Sbjct: 38047408 acccaagacaataaaatatatctatgggtccattggggtta 38047368



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 119/143 (83%), Gaps = 1/143 (0%)
 Strand = Plus / Minus

                                                                            
Query: 554      tagaatattagcatctgctaaatgcctcatgcttcagccagaagcacttggcctaagcta 613
                ||||| |||||  |||||||||||  |  ||||||| |||||||||| ||||||| ||||
Sbjct: 38047004 tagaagattagggtctgctaaatggtttgtgcttcatccagaagcacatggcctatgcta 38046945

                                                                            
Query: 614      aatacagtatgaattccactgatgaaatttttggagtggcatgctagctcaattggttgt 673
                |||||| |||  |||||||||| |||||||| | |||||||| || |||| ||  |||||
Sbjct: 38046944 aatacaatatagattccactgacgaaatttt-gaagtggcattcttgctcgatcagttgt 38046886

                                       
Query: 674      ctacatgtcagttttgtccaatt 696
                 || |||||| ||||||||||||
Sbjct: 38046885 ttagatgtcacttttgtccaatt 38046863
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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A10
          Length = 137348

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                          
Query: 199    tccaaagccttctttggagtcccatcaccgtgttacaaatggcaggaggtagtgccaagt 258
              ||||||||||||||||| || |||||||  ||||| ||||| ||||||||||  | ||||
Sbjct: 128279 tccaaagccttctttggggtaccatcactatgttagaaatgacaggaggtagcactaagt 128220

                                                                          
Query: 259    gccaaaaactaacattagcactcct--gaacctgtctctgatgaggggcacaggctctcc 316
              ||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||||
Sbjct: 128219 gccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcacaggctctcc 128160

                                                            
Query: 317    ttagagcctgagccacctagatgcaagctataaactgaaggataaa 362
              ||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct: 128159 ttagagccttaaccacctagatgcaagctataaactggaagataaa 128114



 Score =  107 bits (54), Expect = 5e-20
 Identities = 91/101 (90%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                          
Query: 73     tcctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtg 130
              |||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |
Sbjct: 128412 tcctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccg 128353

                                                       
Query: 131    acccaagacaataaaa-atatgcctgggtccattggggtta 170
              |||||||||||||||| ||||   |||||||||||||||||
Sbjct: 128352 acccaagacaataaaatatatctatgggtccattggggtta 128312



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 119/143 (83%), Gaps = 1/143 (0%)
 Strand = Plus / Minus

                                                                          
Query: 554    tagaatattagcatctgctaaatgcctcatgcttcagccagaagcacttggcctaagcta 613
              ||||| |||||  |||||||||||  |  ||||||| |||||||||| ||||||| ||||
Sbjct: 127948 tagaagattagggtctgctaaatggtttgtgcttcatccagaagcacatggcctatgcta 127889

                                                                          
Query: 614    aatacagtatgaattccactgatgaaatttttggagtggcatgctagctcaattggttgt 673
              |||||| |||  |||||||||| |||||||| | |||||||| || |||| ||  |||||
Sbjct: 127888 aatacaatatagattccactgacgaaatttt-gaagtggcattcttgctcgatcagttgt 127830

                                     
Query: 674    ctacatgtcagttttgtccaatt 696
               || |||||| ||||||||||||
Sbjct: 127829 ttagatgtcacttttgtccaatt 127807
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>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0471B04
          Length = 138025

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                         
Query: 199   tccaaagccttctttggagtcccatcaccgtgttacaaatggcaggaggtagtgccaagt 258
             ||||||||||||||||| || |||||||  ||||| ||||| ||||||||||  | ||||
Sbjct: 15369 tccaaagccttctttggggtaccatcactatgttagaaatgacaggaggtagcactaagt 15310

                                                                         
Query: 259   gccaaaaactaacattagcactcct--gaacctgtctctgatgaggggcacaggctctcc 316
             ||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||||
Sbjct: 15309 gccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcacaggctctcc 15250

                                                           
Query: 317   ttagagcctgagccacctagatgcaagctataaactgaaggataaa 362
             ||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct: 15249 ttagagccttaaccacctagatgcaagctataaactggaagataaa 15204



 Score =  107 bits (54), Expect = 5e-20
 Identities = 91/101 (90%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                         
Query: 73    tcctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtg 130
             |||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |
Sbjct: 15502 tcctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccg 15443

                                                      
Query: 131   acccaagacaataaaa-atatgcctgggtccattggggtta 170
             |||||||||||||||| ||||   |||||||||||||||||
Sbjct: 15442 acccaagacaataaaatatatctatgggtccattggggtta 15402



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 119/143 (83%), Gaps = 1/143 (0%)
 Strand = Plus / Minus

                                                                         
Query: 554   tagaatattagcatctgctaaatgcctcatgcttcagccagaagcacttggcctaagcta 613
             ||||| |||||  |||||||||||  |  ||||||| |||||||||| ||||||| ||||
Sbjct: 15038 tagaagattagggtctgctaaatggtttgtgcttcatccagaagcacatggcctatgcta 14979

                                                                         
Query: 614   aatacagtatgaattccactgatgaaatttttggagtggcatgctagctcaattggttgt 673
             |||||| |||  |||||||||| |||||||| | |||||||| || |||| ||  |||||
Sbjct: 14978 aatacaatatagattccactgacgaaatttt-gaagtggcattcttgctcgatcagttgt 14920

                                    
Query: 674   ctacatgtcagttttgtccaatt 696
              || |||||| ||||||||||||
Sbjct: 14919 ttagatgtcacttttgtccaatt 14897
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>gb|AY109589.1| Zea mays CL7475_1 mRNA sequence
          Length = 1284

 Score =  101 bits (51), Expect = 3e-18
 Identities = 100/117 (85%), Gaps = 2/117 (1%)
 Strand = Plus / Plus

                                                                       
Query: 241 caggaggtagtgccaagtgccaaaaactaacattagcactcct--gaacctgtctctgat 298
           ||||||||||||||||| ||      | |||||||||||| ||  |||||||| ||||||
Sbjct: 441 caggaggtagtgccaagggctnnnnncaaacattagcactactctgaacctgtgtctgat 500

                                                                    
Query: 299 gaggggcacaggctctccttagagcctgagccacctagatgcaagctataaactgaa 355
            ||||||||||||||||||||||||||   ||||||||||||||||||| |||||||
Sbjct: 501 taggggcacaggctctccttagagccttgaccacctagatgcaagctatcaactgaa 557
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>ref|XM_415002.1| PREDICTED: Gallus gallus sodium-calcium exchanger (NCX1), mRNA
          Length = 5274

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 581  catgcttcagccagaagcacttgg 604
            ||||||||||||||||||||||||
Sbjct: 2956 catgcttcagccagaagcacttgg 2933
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>gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, complete sequence
          Length = 122302

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 461   gtggtggggaggcgtgtgtgtgagtatg 488
             ||||||||||||||||||||| ||||||
Sbjct: 79207 gtggtggggaggcgtgtgtgttagtatg 79234



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 461   gtggtggggaggcgtgtgtgtgagtatg 488
             ||||||||||||||||||||| ||||||
Sbjct: 79113 gtggtggggaggcgtgtgtgttagtatg 79140
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>gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, complete sequence
          Length = 227600

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                   
Query: 445   tgtgaagttgctggtggtggtggggaggcgtgtgtgtg 482
             ||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 42336 tgtgaagttgctgctgg-ggtggggaggcttgtgtgtg 42372
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>gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete sequence
          Length = 191191

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 446   gtgaagttgctggtggtggtgg 467
             ||||||||||||||||||||||
Sbjct: 75306 gtgaagttgctggtggtggtgg 75327
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>gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, complete sequence
          Length = 157284

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                    
Query: 445    tgtgaagttgctggtggtggtggggaggcgtgtgtgtg 482
              ||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 138635 tgtgaagttgctgctgg-ggtggggaggcttgtgtgtg 138671
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>gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, complete sequence
          Length = 143480

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 87    atggtaatgacattggggaaga 108
             ||||||||||||||||||||||
Sbjct: 55963 atggtaatgacattggggaaga 55942
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>dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1252A6, complete
             sequence
          Length = 149431

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 87    atggtaatgacattggggaaga 108
             ||||||||||||||||||||||
Sbjct: 30839 atggtaatgacattggggaaga 30860
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>gb|AC114677.13| Mus musculus chromosome 18, clone RP24-213K19, complete sequence
          Length = 182311

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 651   ggcatgctagctcaattggttgtct 675
             |||||||||||||| ||||||||||
Sbjct: 20398 ggcatgctagctcatttggttgtct 20374
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>gb|AC110217.10| Mus musculus chromosome 1, clone RP24-510P18, complete sequence
          Length = 132882

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 618   cagtatgaattccactgatga 638
             |||||||||||||||||||||
Sbjct: 46336 cagtatgaattccactgatga 46356
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>gb|AC123800.4| Mus musculus BAC clone RP24-343K18 from chromosome 1, complete sequence
          Length = 177367

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 618    cagtatgaattccactgatga 638
              |||||||||||||||||||||
Sbjct: 175876 cagtatgaattccactgatga 175896
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>gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome 14, complete sequence
          Length = 179789

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 578   cctcatgcttcagccagaagcactt 602
             |||||||||| ||||||||||||||
Sbjct: 90877 cctcatgcttgagccagaagcactt 90853
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>emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on chromosome 9 Contains the
             5' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB) and a CpG island, complete
             sequence
          Length = 182914

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   aactaacattagcactcctga 285
             |||||||||||||||||||||
Sbjct: 97530 aactaacattagcactcctga 97510
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>gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, complete sequence
          Length = 146338

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 651   ggcatgctagctcaattggttgtct 675
             |||||||||||||| ||||||||||
Sbjct: 80877 ggcatgctagctcatttggttgtct 80853
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>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 443    gttgtgaagttgctggtggtg 463
              |||||||||||||||||||||
Sbjct: 106661 gttgtgaagttgctggtggtg 106641
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>gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, complete sequence
          Length = 192324

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 453    tgctggtggtggtggggaggc 473
              |||||||||||||||||||||
Sbjct: 130564 tgctggtggtggtggggaggc 130584
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>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 117636

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 499   aagttatagactggtcagctg 519
             |||||||||||||||||||||
Sbjct: 57427 aagttatagactggtcagctg 57447
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>emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184906

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 443   gttgtgaagttgctggtggtg 463
             |||||||||||||||||||||
Sbjct: 86744 gttgtgaagttgctggtggtg 86724
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>ref|NG_002375.1| Homo sapiens oligophrenin 1 pseudogene 1 (OPHN1P1) on chromosome 22
          Length = 20254

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 443   gttgtgaagttgctggtggtg 463
             |||||||||||||||||||||
Sbjct: 12410 gttgtgaagttgctggtggtg 12430
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>ref|NM_016173.3| Homo sapiens HemK methyltransferase family member 1 (HEMK1), mRNA
          Length = 5862

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 453  tgctggtggtggtggggaggc 473
            |||||||||||||||||||||
Sbjct: 3853 tgctggtggtggtggggaggc 3833
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>gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137J4 map 15q21.3, complete
             sequence
          Length = 114149

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 452   ttgctggtggtggtggggagg 472
             |||||||||||||||||||||
Sbjct: 72338 ttgctggtggtggtggggagg 72318
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>gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complete sequence
          Length = 175345

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 523    aattttatttgctctagataa 543
              |||||||||||||||||||||
Sbjct: 128048 aattttatttgctctagataa 128068
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>emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete sequence
          Length = 165790

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 514  cagctgtcaaattttatttgc 534
            |||||||||||||||||||||
Sbjct: 2974 cagctgtcaaattttatttgc 2994
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>gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, complete sequence
          Length = 198440

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 443   gttgtgaagttgctggtggtggtgg 467
             |||||||||||| ||||||||||||
Sbjct: 81945 gttgtgaagttggtggtggtggtgg 81969
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>gb|AF172244.1|AF172244 Homo sapiens HEMK homolog 7kb (HEMK) mRNA, complete cds
          Length = 5737

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 453  tgctggtggtggtggggaggc 473
            |||||||||||||||||||||
Sbjct: 3778 tgctggtggtggtggggaggc 3758
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>emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on chromosome 14, complete
              sequence
          Length = 201441

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 578    cctcatgcttcagccagaagcactt 602
              |||||||||| ||||||||||||||
Sbjct: 116907 cctcatgcttgagccagaagcactt 116931
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>emb|BX537562.1|HSM806176 Homo sapiens mRNA; cDNA DKFZp686I1369 (from clone DKFZp686I1369)
          Length = 5778

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 453  tgctggtggtggtggggaggc 473
            |||||||||||||||||||||
Sbjct: 3991 tgctggtggtggtggggaggc 3971
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>emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-597A11 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185605

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 443   gttgtgaagttgctggtggtg 463
             |||||||||||||||||||||
Sbjct: 96763 gttgtgaagttgctggtggtg 96743
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>emb|Z74023.1|HSLUCA3 Human DNA sequence from clone XXcos-3 on chromosome 3, complete
            sequence
          Length = 25067

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 453  tgctggtggtggtggggaggc 473
            |||||||||||||||||||||
Sbjct: 5296 tgctggtggtggtggggaggc 5316
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>emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-254P21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148065

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 443   gttgtgaagttgctggtggtg 463
             |||||||||||||||||||||
Sbjct: 81491 gttgtgaagttgctggtggtg 81511
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>dbj|AP000534.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c23H5
          Length = 37769

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 443   gttgtgaagttgctggtggtg 463
             |||||||||||||||||||||
Sbjct: 20191 gttgtgaagttgctggtggtg 20211
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>ref|NM_186230.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3330

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 435  aggatgttgttgtgaagttg 454
            ||||||||||||||||||||
Sbjct: 3257 aggatgttgttgtgaagttg 3276
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>gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, complete sequence
          Length = 109297

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   gtggtggggaggcgtgtgtg 480
             ||||||||||||||||||||
Sbjct: 69297 gtggtggggaggcgtgtgtg 69316
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>gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, complete sequence
          Length = 232304

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   caaattttatttgctctaga 540
             ||||||||||||||||||||
Sbjct: 46526 caaattttatttgctctaga 46507
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>ref|XM_817863.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.6k15.3480)
           partial mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 474 gtgtgtgtgagtatgcgtggaaat 497
           ||||||||| ||||||||||||||
Sbjct: 107 gtgtgtgtgtgtatgcgtggaaat 130
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>emb|AJ865241.1| Cocos nucifera microsatellite DNA, clone CnCir 146
          Length = 355

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  tcctggacctaaccatggta 92
           ||||||||||||||||||||
Sbjct: 204 tcctggacctaaccatggta 185
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>gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, complete sequence
          Length = 104859

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   cccaagacaataaaaatatgcctg 155
             ||||||||||||||||||| ||||
Sbjct: 50036 cccaagacaataaaaatatacctg 50059
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>gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-67P7, complete
              sequence
          Length = 214125

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 491    tggaaatgaagttatagact 510
              ||||||||||||||||||||
Sbjct: 126448 tggaaatgaagttatagact 126467
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>gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete sequence
          Length = 102937

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   tgctggtggtggtggggagg 472
             ||||||||||||||||||||
Sbjct: 13192 tgctggtggtggtggggagg 13173
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>emb|BX908795.10| Zebrafish DNA sequence from clone DKEY-92J12 in linkage group 1, complete
              sequence
          Length = 142468

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 605    cctaagctaaatacagtatg 624
              ||||||||||||||||||||
Sbjct: 128975 cctaagctaaatacagtatg 128956
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>emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in linkage group 21,
             complete sequence
          Length = 242772

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   tctgatgaggggcacaggct 312
             ||||||||||||||||||||
Sbjct: 54513 tctgatgaggggcacaggct 54494
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>dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, complete sequences
          Length = 171989

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 521    caaattttatttgctctaga 540
              ||||||||||||||||||||
Sbjct: 142180 caaattttatttgctctaga 142199
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>dbj|BS000596.1| Pan troglodytes chromosome Y clone:PTB-130H13, complete sequences
          Length = 182507

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   caaattttatttgctctaga 540
             ||||||||||||||||||||
Sbjct: 42095 caaattttatttgctctaga 42114
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 521      caaattttatttgctctaga 540
                ||||||||||||||||||||
Sbjct: 22698182 caaattttatttgctctaga 22698163
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>gb|AC160397.9| Mus musculus 6 BAC RP23-279I21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 173003

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    gaagttatcacaggatgttg 443
              ||||||||||||||||||||
Sbjct: 111350 gaagttatcacaggatgttg 111331
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>ref|XM_496597.2| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
            variant 1 (LOC440910), mRNA
          Length = 4157

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  gttgtgaagttgctggtggt 462
            ||||||||||||||||||||
Sbjct: 2556 gttgtgaagttgctggtggt 2537
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>ref|XM_933134.1| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
           variant 3 (LOC440910), mRNA
          Length = 439

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 443 gttgtgaagttgctggtggt 462
           ||||||||||||||||||||
Sbjct: 156 gttgtgaagttgctggtggt 137
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>ref|XM_928770.1| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
            variant 2 (LOC440910), mRNA
          Length = 4499

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  gttgtgaagttgctggtggt 462
            ||||||||||||||||||||
Sbjct: 2898 gttgtgaagttgctggtggt 2879
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>gb|AC151479.4| Pan troglodytes BAC clone CH251-656P8 from chromosome y, complete
              sequence
          Length = 179557

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 521    caaattttatttgctctaga 540
              ||||||||||||||||||||
Sbjct: 112249 caaattttatttgctctaga 112230
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 435     aggatgttgttgtgaagttg 454
               ||||||||||||||||||||
Sbjct: 1718687 aggatgttgttgtgaagttg 1718706
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>gb|AC064871.6| Homo sapiens BAC clone RP11-598C21 from 2, complete sequence
          Length = 194197

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 571   ctaaatgcctcatgcttcag 590
             ||||||||||||||||||||
Sbjct: 64226 ctaaatgcctcatgcttcag 64207
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>gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194925

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   gaagttatcacaggatgttg 443
             ||||||||||||||||||||
Sbjct: 36298 gaagttatcacaggatgttg 36279
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>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence
          Length = 132753

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    gttgtgaagttgctggtggt 462
              ||||||||||||||||||||
Sbjct: 114007 gttgtgaagttgctggtggt 113988
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>gb|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y, complete sequence
          Length = 171449

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 521    caaattttatttgctctaga 540
              ||||||||||||||||||||
Sbjct: 108144 caaattttatttgctctaga 108163
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>emb|BX005483.3| Zebrafish DNA sequence from clone CH211-286G12 in linkage group 23,
             complete sequence
          Length = 182479

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     accgataatattcattaaaa 25
             ||||||||||||||||||||
Sbjct: 97030 accgataatattcattaaaa 97049
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>gb|AC023271.11| Homo sapiens BAC clone RP11-96E8 from 2, complete sequence
          Length = 106499

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 559   tattagcatctgctaaatgc 578
             ||||||||||||||||||||
Sbjct: 52446 tattagcatctgctaaatgc 52465
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>gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence
          Length = 178377

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 521    caaattttatttgctctaga 540
              ||||||||||||||||||||
Sbjct: 141898 caaattttatttgctctaga 141917
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>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1606_D04
          Length = 92729

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   aggatgttgttgtgaagttg 454
             ||||||||||||||||||||
Sbjct: 60887 aggatgttgttgtgaagttg 60906
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>dbj|AP006749.3| Homo sapiens genomic DNA, chromosome 8q24.3, clone: KB1528A10, complete
             sequence
          Length = 34971

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   gtggtggggaggcgtgtgtg 480
             ||||||||||||||||||||
Sbjct: 20390 gtggtggggaggcgtgtgtg 20371
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>emb|BX544880.3| Mouse DNA sequence from clone RP23-119F1 on chromosome X, complete
              sequence
          Length = 208959

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    cacagcagtgttttggtatc 198
              ||||||||||||||||||||
Sbjct: 167958 cacagcagtgttttggtatc 167977
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>emb|CR855831.2| Xenopus tropicalis finished cDNA, clone TTpA003p15
          Length = 2414

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctgaaggataaagaactgtt 370
            ||||||||||||||||||||
Sbjct: 2226 ctgaaggataaagaactgtt 2207
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>emb|CR450723.12| Zebrafish DNA sequence from clone DKEY-47C8 in linkage group 23, complete
              sequence
          Length = 234987

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      accgataatattcattaaaa 25
              ||||||||||||||||||||
Sbjct: 125112 accgataatattcattaaaa 125131
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>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete
              sequence
          Length = 191676

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ggtggggaggcgtgtgtgtg 482
              ||||||||||||||||||||
Sbjct: 104336 ggtggggaggcgtgtgtgtg 104317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,828,499
Number of Sequences: 3902068
Number of extensions: 7828499
Number of successful extensions: 164288
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 163985
Number of HSP's gapped (non-prelim): 296
length of query: 701
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 678
effective length of database: 17,143,297,704
effective search space: 11623155843312
effective search space used: 11623155843312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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