ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19h09 |
|---|---|
| Clone Library Name | barley_pub |
>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle| Length = 1938 Score = 36.2 bits (82), Expect = 0.085 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = -3 Query: 640 ESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAV 461 E CNHL ++ E +L ++LER + + D+E+ KR + + L T E V Sbjct: 1011 EDKCNHLNKLKAKL-EQALDELEDNLEREKKVRGDVEKAKRKV------EQDLKSTQENV 1063 Query: 460 QESSRVKRRL 431 ++ RVKR L Sbjct: 1064 EDLERVKREL 1073
>HLES_DROME (Q02308) Protein hairless| Length = 1077 Score = 32.3 bits (72), Expect = 1.2 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 8/116 (6%) Frame = +1 Query: 37 AKPDTRCSLGSVGQTSMDSIPA---QGSRSRVFIIHFRPTK-----SIAHCAVXRRSPPG 192 +KP + L S+ Q +DS+PA Q S++ I + ++H + SPP Sbjct: 497 SKPKPKAKLSSIIQKLIDSVPARLEQMSKTSAVIASTTTSSDRIGGGLSHALTHKVSPPS 556 Query: 193 KGTEEGLVGGSKYELIITKKIRDLMRFRKEATSIVVWYLLFRSSLEPDGVVKNGAG 360 T G + + + +K R L F K SLE +G V NG+G Sbjct: 557 SATAAGRLVEYHTQHVSPRK-RILREFEK-------------VSLEDNGCVNNGSG 598
>RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) (ERC1)| (CAZ-associated structural protein 2) (CAST2) Length = 1120 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = -3 Query: 604 EMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAVQE 455 E DKEKQ+ + ER++S++AD T AL T+E ++E Sbjct: 585 EQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKE 634
>RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (ERC1)| (CAZ-associated structural protein 2) (CAST2) Length = 948 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = -3 Query: 604 EMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAVQE 455 E DKEKQ+ + ER++S++AD T AL T+E ++E Sbjct: 557 EQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKE 606
>RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)| Length = 1116 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = -3 Query: 604 EMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAVQE 455 E DKEKQ+ + ER++S++AD T AL T+E ++E Sbjct: 585 EQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKE 634
>ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural protein 1)| (CAST1) (Cast) (Cytomatrix protein p110) Length = 957 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = -3 Query: 604 EMPEDKEKQLLNSLERIRSIEADLERTKRA---LQVTVAKQNSLVETLEAVQE 455 E DK+KQL N +R++S++ D T A L+ ++++ ++E L+ +E Sbjct: 553 EQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE 605
>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1)| (CAST1) Length = 957 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = -3 Query: 604 EMPEDKEKQLLNSLERIRSIEADLERTKRA---LQVTVAKQNSLVETLEAVQE 455 E DK+KQL N +R++S++ D T A L+ ++++ ++E L+ +E Sbjct: 553 EQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE 605
>ERC2_HUMAN (O15083) ERC protein 2| Length = 957 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = -3 Query: 604 EMPEDKEKQLLNSLERIRSIEADLERTKRA---LQVTVAKQNSLVETLEAVQE 455 E DK+KQL N +R++S++ D T A L+ ++++ ++E L+ +E Sbjct: 553 EQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE 605
>CLP_TRYBB (P31543) Heat shock protein 100 (CLP protein)| Length = 868 Score = 31.6 bits (70), Expect = 2.1 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = -3 Query: 643 LESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEA 464 LE L + + DKE S ER++ ++AD++R + LQ V+K N + ++ Sbjct: 413 LERKKRQLEIEAKALERDKEAA---SRERLKLVKADIQRVEEELQPLVSKYNDERQRIDE 469 Query: 463 VQE 455 +QE Sbjct: 470 LQE 472
>Y555_METJA (Q57975) Hypothetical protein MJ0555| Length = 350 Score = 30.4 bits (67), Expect = 4.7 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 11/108 (10%) Frame = +1 Query: 10 IYIDIISSAAKPDTRCSLGSVGQTSMDSIPAQGSRSRVFIIHFRPTKSIA--------HC 165 + ++++ ++ D C + +VG T + + +G+R F I+ P +IA H Sbjct: 182 VLLEVMKRLSEEDIDCQVYAVG-TVQEEVGLKGARVSAFKIN--PDVAIALDVTIAGDHP 238 Query: 166 AVXRRSPP---GKGTEEGLVGGSKYELIITKKIRDLMRFRKEATSIVV 300 + + P GKG G+V S LI K+ D+++ E I V Sbjct: 239 GIKKEDAPVDLGKGPVVGIVDASGRGLIAHPKVLDMIKAVSEKYKIDV 286
>MYSP_SCHMA (P06198) Paramyosin| Length = 866 Score = 30.4 bits (67), Expect = 4.7 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -3 Query: 604 EMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLE-AVQESSRVKRRL 431 ++ E K QL N +E IRS +LER ++ + + + S V L V + KRRL Sbjct: 589 QITEHKRLQLANEIEEIRSTLENLERLRKHAETELEEAQSRVSELTIQVNTLTNDKRRL 647
>MYSA_DROME (P05661) Myosin heavy chain, muscle| Length = 1962 Score = 30.4 bits (67), Expect = 4.7 Identities = 23/70 (32%), Positives = 35/70 (50%) Frame = -3 Query: 640 ESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAV 461 E NHL +K E +L +SLER + + D+E++KR + + L T EAV Sbjct: 1013 EDKINHL-NKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKV------EGDLKLTQEAV 1065 Query: 460 QESSRVKRRL 431 + R K+ L Sbjct: 1066 ADLERNKKEL 1075
>SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chromosome| segregation protein cut3) (Cell untimely torn protein 3) Length = 1324 Score = 30.0 bits (66), Expect = 6.1 Identities = 13/48 (27%), Positives = 29/48 (60%) Frame = -3 Query: 595 EDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAVQES 452 E+K+K + +LE+I + ++ + + L + + K+N L+ +E+ Q S Sbjct: 517 EEKQKAMAPALEKINQLTSEKQILQVELDMLLNKENDLINDVESSQSS 564
>GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa| golgin) (Golgin-245) (Protein 72.1) Length = 2230 Score = 30.0 bits (66), Expect = 6.1 Identities = 15/67 (22%), Positives = 32/67 (47%) Frame = -3 Query: 643 LESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEA 464 L S + ++ E+ E KEK + E + + ++T+ A + A+ + ++T+E Sbjct: 387 LRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIEK 446 Query: 463 VQESSRV 443 E R+ Sbjct: 447 TSEEERI 453
>PLVAP_HUMAN (Q9BX97) Plasmalemma vesicle-associated protein (Plasmalemma| vesicle protein 1) (PV-1) (Fenestrated-endothelial linked structure protein) Length = 442 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/74 (21%), Positives = 31/74 (41%) Frame = -3 Query: 643 LESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEA 464 + C+H+ S E+ + L +ER+ +DL+R K Q + + +E Sbjct: 268 IRRACDHMPSLMSSKVEELARSLRADIERVARENSDLQRQKLEAQQGLRASQEAKQKVEK 327 Query: 463 VQESSRVKRRLFCS 422 ++ K + CS Sbjct: 328 EAQAREAKLQAECS 341
>Y065_MYCGE (P47311) Hypothetical ABC transporter ATP-binding protein MG065| Length = 466 Score = 29.6 bits (65), Expect = 8.0 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -2 Query: 314 KRRYHTTMLVASFRNLIRSLIFLVI 240 K+RY TTM++ + NLI +L LVI Sbjct: 417 KKRYQTTMIIVTHNNLIANLADLVI 441
>ICIA_PSEAE (Q9HW38) Chromosome initiation inhibitor (OriC replication| inhibitor) Length = 300 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -3 Query: 622 LASKPPEMPEDKEKQLLNSLERIRSIEADLER 527 L + P P D ++LLN ++++R +E DL+R Sbjct: 51 LVRETPPHPTDLGRRLLNHVQQVRLLEGDLQR 82
>MYSP_SARSC (Q9BMM8) Paramyosin| Length = 876 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -3 Query: 595 EDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAVQES 452 EDK + L + LE R + +ER K LQ+ V + +E E ES Sbjct: 36 EDKIRLLSDDLESEREMRQRIEREKAELQIQVMSLSERLEEAEGSSES 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,650,850 Number of Sequences: 219361 Number of extensions: 1998073 Number of successful extensions: 6551 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 6191 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6548 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
