ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S35B4_DROME (Q9W429) UDP-xylose and UDP-N-acetylglucosamine tran... 32 0.88
2Y420_BUCAP (Q8K9C6) Hypothetical protein BUsg420 29 7.5
3YR187_MIMIV (Q5URB3) Hypothetical protein R187 28 9.7

>S35B4_DROME (Q9W429) UDP-xylose and UDP-N-acetylglucosamine transporter-like|
          Length = 352

 Score = 32.0 bits (71), Expect = 0.88
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = -2

Query: 340 HFCSSAYQLM*DMCCGVNLIKRERKWRKQSIVEIQC*----CVXLRWGETKSXTFHSSNL 173
           H    +  LM +M  G+ L+K+    R+ S V +       C  +  G+ K  T HS  +
Sbjct: 97  HMIFRSGSLMANMIMGIVLLKKRYNLRQYSSVAMITAGIILCTLVSSGDVKDNTHHSLKV 156

Query: 172 PLTLSTIKWWT 140
             + S   WWT
Sbjct: 157 DTSYSDFFWWT 167



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>Y420_BUCAP (Q8K9C6) Hypothetical protein BUsg420|
          Length = 319

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = -2

Query: 202 KSXTFHSSNLPLTLSTIKWWTSINVTRKDGK-----IFVTNLSCL-YVSHRLC 62
           K+  + S NLPLTLS ++ W  I +   D K      F  +++CL    ++LC
Sbjct: 8   KNSIYPSINLPLTLSLLEEWCLIYICGIDSKKHLQNQFTIDINCLKKEEYKLC 60



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>YR187_MIMIV (Q5URB3) Hypothetical protein R187|
          Length = 246

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 140 KYKCHS*RWEDFCNEFILPVCQPSF 66
           KYKCH   +E F  +FI+P  +  F
Sbjct: 196 KYKCHPSDYEKFVRQFIIPKLKKQF 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,565,243
Number of Sequences: 219361
Number of extensions: 1110336
Number of successful extensions: 2526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2526
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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