ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DR206_PEA (P13240) Disease resistance response protein 206 68 1e-11
2S10A9_RABIT (P50117) Protein S100-A9 (S100 calcium-binding prote... 35 0.16
3GALR3_MOUSE (O88853) Galanin receptor type 3 (GAL3-R) (GALR3) 34 0.21
4Y4XP_RHISN (P55708) Putative cysteine synthase (EC 2.5.1.47) (O-... 32 1.0
5K0196_HUMAN (Q12768) Protein KIAA0196 32 1.4
6GALR3_RAT (O88626) Galanin receptor type 3 (GAL3-R) (GALR3) 31 1.8
7CENB1_HUMAN (Q15027) Centaurin-beta 1 (Cnt-b1) 31 2.3
8K0196_MOUSE (Q8C2E7) Protein KIAA0196 30 5.2
9YHEB_CHLVI (P56160) Hypothetical 28.2 kDa protein in hemB 3'region 30 5.2
10DEOC_HALMA (Q5UX95) Probable deoxyribose-phosphate aldolase (EC ... 29 8.9
11CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long... 29 8.9
12GCS1_CAEEL (Q19426) Probable mannosyl-oligosaccharide glucosidas... 29 8.9

>DR206_PEA (P13240) Disease resistance response protein 206|
          Length = 184

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 38/116 (32%), Positives = 65/116 (56%)
 Frame = -3

Query: 475 FGAVVAIDDPLTTSPAVTGSAKSKDEVGRAQGTYTFADQATFGLLMNMNFVFTAGEYKGS 296
           FG ++  DDP+T S ++     S  +VGRAQG Y +  + T+   ++  FV  +  ++G 
Sbjct: 73  FGNIIVFDDPITLSHSL-----SSKQVGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQG- 126

Query: 295 SLTIYGRNEVLSAVREMSILGGTGKFRMARGYVQASTVDSGANSGETVVEYTVYVK 128
           ++T  G + +++  R++S+ GGTG F M RG    +T+ + A  GE      VY+K
Sbjct: 127 TITFAGADPIVAKTRDISVTGGTGDFFMHRG---IATITTDAFEGEAYFRLGVYIK 179



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>S10A9_RABIT (P50117) Protein S100-A9 (S100 calcium-binding protein A9)|
           (Calgranulin-B) (Migration inhibitory factor-related
           protein 14) (MRP-14) (Fragment)
          Length = 118

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -2

Query: 356 HLRAPHEHELRVHRRGVQGQQPDHLRPQRGAFGGEGDEHPRGHG 225
           H  APH+HE   H  G+ G  P H         G G  H  GHG
Sbjct: 81  HKNAPHDHEGHSHGPGLGGSGPGH---------GHGHSHGHGHG 115



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>GALR3_MOUSE (O88853) Galanin receptor type 3 (GAL3-R) (GALR3)|
          Length = 370

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 23/57 (40%), Positives = 26/57 (45%)
 Frame = -2

Query: 359 GHLRAPHEHELRVHRRGVQGQQPDHLRPQRGAFGGEGDEHPRGHGQVPHGSRLRPGE 189
           GH R  H H  R+HR  ++  QP       G  G  GD  PRG    P G  LR GE
Sbjct: 309 GHRRHRHHHH-RLHR-ALRRVQP----ASSGPAGYPGDARPRGWSMEPRGDALRGGE 359



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>Y4XP_RHISN (P55708) Putative cysteine synthase (EC 2.5.1.47) (O-acetylserine|
           sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase)
          Length = 336

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -3

Query: 313 GEYKGSSLTIYGRNEVLSAVREMSILGGTGKFRMARGYVQASTVDSGANSGETVVE 146
           G+    S+ + GRN  L    E +  GG+ K RMAR  V A+  D     G T+VE
Sbjct: 11  GQTPVMSIDVPGRNATLVLKIEKNNPGGSMKDRMARSMVIAALQDGRLPPGGTIVE 66



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>K0196_HUMAN (Q12768) Protein KIAA0196|
          Length = 1159

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 306  YSPAVNTKFMFMRSPKVAWSANV*VPCARPTSSLDLADPVTAGLV 440
            Y P VN  F+  + PK+ ++ N+ + C +PT  +D   P+  GL+
Sbjct: 1038 YFPIVNFLFLIAQLPKLQYNKNLGMVCRKPTDPVDW-PPLVLGLL 1081



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>GALR3_RAT (O88626) Galanin receptor type 3 (GAL3-R) (GALR3)|
          Length = 370

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 20/53 (37%), Positives = 22/53 (41%)
 Frame = -2

Query: 350 RAPHEHELRVHRRGVQGQQPDHLRPQRGAFGGEGDEHPRGHGQVPHGSRLRPG 192
           R  H H  R HR  ++  QP       G  G  GD  PRG    P G  LR G
Sbjct: 310 RRRHRHHHRAHR-ALRRVQP----ASSGPAGYPGDARPRGWSMEPRGDALRGG 357



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>CENB1_HUMAN (Q15027) Centaurin-beta 1 (Cnt-b1)|
          Length = 740

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -2

Query: 371 VRRPGHLRAPHEHELRVHRRGVQGQQPDHLRPQRGAFGGEGDEHPRGHGQVPHGSRLRP 195
           V++PG   +  E E  +H + V+ +    L   RG  GG G   PRG   VP    +RP
Sbjct: 494 VKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRG--RPRGQPPVPPKPSIRP 550



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>K0196_MOUSE (Q8C2E7) Protein KIAA0196|
          Length = 1159

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 306  YSPAVNTKFMFMRSPKVAWSANV*VPCARPTSSLDLADPVTAGLV 440
            Y P VN  F+  + PK+ ++ N+ + C +P   +D   P+  GL+
Sbjct: 1038 YFPIVNFLFLIAQLPKLQYNKNLGMVCRKPADPVDW-PPLVLGLL 1081



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>YHEB_CHLVI (P56160) Hypothetical 28.2 kDa protein in hemB 3'region|
          Length = 261

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 317 RRGVQGQQPDHLRPQRGAFGGEGDEHPRGHGQ 222
           R+G+  + PD      G FG E DEHP G+G+
Sbjct: 53  RQGISAKFPDD-----GLFGEEFDEHPSGNGR 79



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>DEOC_HALMA (Q5UX95) Probable deoxyribose-phosphate aldolase (EC 4.1.2.4)|
           (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)
          Length = 231

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 271 EVLSAVREMSILGGTGKFRMARGYVQASTVDSGANSGETVV 149
           E+LS    +   GG G +  A+   +A     GA+SG+T+V
Sbjct: 163 EILSKYLPVKASGGVGSWADAKAMFEAGAERIGASSGDTIV 203



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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 311  GVQGQQ-PDHLRPQRGAFGGEGDEHPRGHGQVP--HGSRLRPG 192
            G+ G+Q P  L+  +G  G  GD+ P+G   VP   G R  PG
Sbjct: 2102 GLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPG 2144



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>GCS1_CAEEL (Q19426) Probable mannosyl-oligosaccharide glucosidase (EC|
           3.2.1.106) (Processing A-glucosidase I)
          Length = 781

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 231 PPRMLISLTAESTSLRP*MVRLLPLYSPAVNTKFMFMRSPKVAWS 365
           P   L+S      +L P M++L+P  SP + +    +R PK+ W+
Sbjct: 622 PSYTLVSDAFGYNNLFPMMLKLIPSKSPILKSMLDKIRDPKILWT 666


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,386,151
Number of Sequences: 219361
Number of extensions: 963824
Number of successful extensions: 3477
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3473
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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