ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19g17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY109835.1| Zea mays CL587_1 mRNA sequence 101 2e-18
2gb|AF123594.1|AF123594 Zea mays Wee1-like protein (Wee1) mRNA, p... 94 5e-16
3ref|XM_464040.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
5dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
6dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
7gb|AY439100.1| Glycine max wee1 mRNA, complete cds 50 0.007
8gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
11gb|AC154193.2| Mus musculus BAC clone RP24-398A6 from chromosome... 40 6.6
12gb|AC157560.3| Mus musculus chromosome 15, clone RP24-270I3, com... 40 6.6
13gb|AC163443.6| Mus musculus chromosome 15, clone RP23-284G17, co... 40 6.6
14ref|XM_585523.2| PREDICTED: Bos taurus similar to IGF-II mRNA-bi... 40 6.6
15gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 6.6
16gb|AC087251.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 6.6
17emb|CT009539.5| Mouse DNA sequence from clone RP23-10G6 on chrom... 40 6.6
18gb|AC154577.2| Mus musculus BAC clone RP23-375G9 from chromosome... 40 6.6
19emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060... 40 6.6
20gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's H... 40 6.6
21ref|XM_962334.1| PREDICTED: Tribolium castaneum similar to hypox... 40 6.6
22gb|AC090833.8| Homo sapiens chromosome 11, clone CTD-2520I17, co... 40 6.6
23gb|AC094104.2| Homo sapiens chromosome 5 clone RP11-438C19, comp... 40 6.6
24gb|AC161379.2| Mus musculus BAC clone RP23-207P12 from chromosom... 40 6.6
25gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 40 6.6
26emb|AL844842.29| Mouse DNA sequence from clone RP23-354G20 on ch... 40 6.6
27emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chr... 40 6.6 
>gb|AY109835.1| Zea mays CL587_1 mRNA sequence
          Length = 1951

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                        
Query: 405  gggtgtcccaggatctcttttgcagacggccgcctcacgggatcagggtccatcatcgac 464
            ||||||| ||||||||| ||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 1540 gggtgtctcaggatctcctttgctgaaggccgcctcaccggatcagggtccatcatagac 1481

                                   
Query: 465  ttgattaaactctggaactgcat 487
            ||||||||||| || ||||||||
Sbjct: 1480 ttgattaaactttgaaactgcat 1458
to top
>gb|AF123594.1|AF123594 Zea mays Wee1-like protein (Wee1) mRNA, partial cds
          Length = 1601

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                        
Query: 405  gggtgtcccaggatctcttttgcagacggccgcctcacgggatcagggtccatcatcgac 464
            ||||||| ||||||||| ||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 1177 gggtgtctcaggatctcctttgctgaaggccgcctcaccggatcagggtccatcatagac 1118

                                   
Query: 465  ttgattaaactctggaactgcat 487
            |||||||| || || ||||||||
Sbjct: 1117 ttgattaagctttgaaactgcat 1095
to top
>ref|XM_464040.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1563

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 388  gaagcttctcgaagatggggtgtcccaggatctcttttgcagacggccgcctcacgggat 447
            ||||||| || |||||||| |||| |||||  ||||| ||||| ||||||||||| ||||
Sbjct: 1540 gaagcttatcaaagatgggatgtctcaggacttctttcgcagatggccgcctcactggat 1481

                                                      
Query: 448  cagggtccatcatcgacttgattaaactctggaactgcattg 489
            |||| |||||||| ||||| ||||||||||| || |||||||
Sbjct: 1480 caggatccatcatggactttattaaactctgaaattgcattg 1439
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 388     gaagcttctcgaagatggggtgtcccaggatctcttttgcagacggccgcctcacgggat 447
               ||||||| || |||||||| |||| |||||  ||||| ||||| ||||||||||| ||||
Sbjct: 1860433 gaagcttatcaaagatgggatgtctcaggacttctttcgcagatggccgcctcactggat 1860492

                                 
Query: 448     cagggtccatcatcgact 465
               |||| |||||||| ||||
Sbjct: 1860493 caggatccatcatggact 1860510
to top
>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0585B01
          Length = 133231

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                         
Query: 388   gaagcttctcgaagatggggtgtcccaggatctcttttgcagacggccgcctcacgggat 447
             ||||||| || |||||||| |||| |||||  ||||| ||||| ||||||||||| ||||
Sbjct: 97077 gaagcttatcaaagatgggatgtctcaggacttctttcgcagatggccgcctcactggat 97136

                               
Query: 448   cagggtccatcatcgact 465
             |||| |||||||| ||||
Sbjct: 97137 caggatccatcatggact 97154
to top
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OSJNBa0081C13
          Length = 144624

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 399 aagatggggtgtcccaggatctcttttgcagacggccgcctcacgggatcagggtccatc 458
           |||||||| |||| |||||  ||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 5   aagatgggatgtctcaggacttctttcgcagatggccgcctcactggatcaggatccatc 64

                  
Query: 459 atcgact 465
           || ||||
Sbjct: 65  atggact 71
to top
>gb|AY439100.1| Glycine max wee1 mRNA, complete cds
          Length = 1817

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 420  tcttttgcagacggccgcctcacgggatcagggtccatcat 460
            ||||| ||||| |||||| |||| |||||||||||||||||
Sbjct: 1511 tctttagcagaaggccgcttcaccggatcagggtccatcat 1471
to top
>gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0066C04, complete sequence
          Length = 133944

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   caaaatttgacagcagctgat 311
             |||||||||||||||||||||
Sbjct: 73926 caaaatttgacagcagctgat 73906
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 291      caaaatttgacagcagctgat 311
                |||||||||||||||||||||
Sbjct: 11673800 caaaatttgacagcagctgat 11673820
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 291      caaaatttgacagcagctgat 311
                |||||||||||||||||||||
Sbjct: 11752989 caaaatttgacagcagctgat 11753009
to top
>gb|AC154193.2| Mus musculus BAC clone RP24-398A6 from chromosome 14, complete sequence
          Length = 161686

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   tcaatcagtagctatacagaaaca 230
             ||||||| ||||||||||||||||
Sbjct: 70938 tcaatcaatagctatacagaaaca 70961
to top
>gb|AC157560.3| Mus musculus chromosome 15, clone RP24-270I3, complete sequence
          Length = 157844

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    atggctttcacagcttgaca 202
              ||||||||||||||||||||
Sbjct: 148019 atggctttcacagcttgaca 148038
to top
>gb|AC163443.6| Mus musculus chromosome 15, clone RP23-284G17, complete sequence
          Length = 213017

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   atggctttcacagcttgaca 202
             ||||||||||||||||||||
Sbjct: 16791 atggctttcacagcttgaca 16810
to top
>ref|XM_585523.2| PREDICTED: Bos taurus similar to IGF-II mRNA-binding protein 1
           (LOC539191), mRNA
          Length = 861

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 caaaatttgacagcagctga 310
           ||||||||||||||||||||
Sbjct: 322 caaaatttgacagcagctga 341
to top
>gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-464J4, complete sequence
          Length = 185081

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    ctttcacagcttgacaaccc 206
              ||||||||||||||||||||
Sbjct: 184940 ctttcacagcttgacaaccc 184921
to top
>gb|AC087251.2| Rattus norvegicus strain Brown Norway clone RP31-186N2, complete
             sequence
          Length = 149358

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   ctttcacagcttgacaaccc 206
             ||||||||||||||||||||
Sbjct: 24858 ctttcacagcttgacaaccc 24839
to top
>emb|CT009539.5| Mouse DNA sequence from clone RP23-10G6 on chromosome 14, complete
             sequence
          Length = 170619

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   tcaatcagtagctatacagaaaca 230
             ||||||| ||||||||||||||||
Sbjct: 37893 tcaatcaatagctatacagaaaca 37916
to top
>gb|AC154577.2| Mus musculus BAC clone RP23-375G9 from chromosome 17, complete sequence
          Length = 189549

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     cagactgcccacagcaccactaac 99
              |||||| |||||||||||||||||
Sbjct: 160505 cagactacccacagcaccactaac 160482
to top
>emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060K6 on chromosome 20p12.1-13
            Contains the RPS11P1 gene for ribosomal protein S11
            pseudogene 1, complete sequence
          Length = 117349

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   ccttcctttagttcttccca 43
            ||||||||||||||||||||
Sbjct: 7595 ccttcctttagttcttccca 7576
to top
>gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 224687

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   ctttcacagcttgacaaccc 206
             ||||||||||||||||||||
Sbjct: 15325 ctttcacagcttgacaaccc 15344
to top
>ref|XM_962334.1| PREDICTED: Tribolium castaneum similar to hypoxia-inducible factor 1,
            alpha subunit (basic helix-loop-helix transcription
            factor) (LOC655772), mRNA
          Length = 3243

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  aaccaaccaccaccggggcc 137
            ||||||||||||||||||||
Sbjct: 2280 aaccaaccaccaccggggcc 2299
to top
>gb|AC090833.8| Homo sapiens chromosome 11, clone CTD-2520I17, complete sequence
          Length = 164963

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    ctgcccacagcaccactaac 99
             ||||||||||||||||||||
Sbjct: 42852 ctgcccacagcaccactaac 42871
to top
>gb|AC094104.2| Homo sapiens chromosome 5 clone RP11-438C19, complete sequence
          Length = 199531

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   gacttgattaaactctggaa 481
             ||||||||||||||||||||
Sbjct: 33292 gacttgattaaactctggaa 33273
to top
>gb|AC161379.2| Mus musculus BAC clone RP23-207P12 from chromosome 17, complete sequence
          Length = 189293

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     cagactgcccacagcaccactaac 99
              |||||| |||||||||||||||||
Sbjct: 128600 cagactacccacagcaccactaac 128623
to top
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     ctttcacagcttgacaaccc 206
               ||||||||||||||||||||
Sbjct: 1518112 ctttcacagcttgacaaccc 1518093
to top
>emb|AL844842.29| Mouse DNA sequence from clone RP23-354G20 on chromosome 2, complete
              sequence
          Length = 228433

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    agctatacagaaacaacaga 235
              ||||||||||||||||||||
Sbjct: 216681 agctatacagaaacaacaga 216700
to top
>emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chromosome X, complete
             sequence
          Length = 216656

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 466   tgattaaactctggaactgcattg 489
             ||||||||||||||||||| ||||
Sbjct: 19190 tgattaaactctggaactggattg 19167


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,688,278
Number of Sequences: 3902068
Number of extensions: 3688278
Number of successful extensions: 67759
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67657
Number of HSP's gapped (non-prelim): 102
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top