ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19g11 |
|---|---|
| Clone Library Name | barley_pub |
>CR015_HUMAN (Q96N68) Protein C18orf15| Length = 181 Score = 33.1 bits (74), Expect = 0.44 Identities = 9/30 (30%), Positives = 17/30 (56%) Frame = -2 Query: 131 LCICWVLFLCTCTCRSILLCTCKIILMCPC 42 +C+C + +C C + +C C ++ MC C Sbjct: 127 VCMCACMCVCVHVCACVYVCMCVLVCMCAC 156
>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3| Length = 465 Score = 30.8 bits (68), Expect = 2.2 Identities = 11/39 (28%), Positives = 21/39 (53%) Frame = -2 Query: 158 SLWNSLYVRLCICWVLFLCTCTCRSILLCTCKIILMCPC 42 S+ +S+ V +C+C +++C C S + C + C C Sbjct: 367 SILSSVCVCVCVCVCMYVCMCVMESACVYVCVMESACVC 405
>2ABB_PIG (P54614) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B beta isoform (PP2A, subunit B, B-beta isoform) (PP2A, subunit B, B55-beta isoform) (PP2A, subunit B, PR55-beta isoform) (PP2A, subunit B, R2-beta isoform) Length = 443 Score = 30.4 bits (67), Expect = 2.8 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + V N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 296 IMTRDYLTVKVWDLNMENRPIETYQVHNYLRSKLCSLYENDCIFDKFECVWNGSDSVI 353
>Q300_MOUSE (Q02722) Protein Q300| Length = 77 Score = 30.4 bits (67), Expect = 2.8 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -2 Query: 149 NSLYVRLCICWVLFLCTCTCRSILLCTCK 63 N YV +C+C +C C C L C CK Sbjct: 23 NLFYVCVCVC----VCVCVCVCTLTCMCK 47
>PRTP_HHV7J (P52385) Probable processing and transport protein| Length = 721 Score = 30.0 bits (66), Expect = 3.7 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 11/74 (14%) Frame = -2 Query: 488 RLLQHLENQHNVLFCY-------NNL*--KHPMSTFHRTIQKLFIHLSGPYQQYHSPTLP 336 R LQ LEN F Y NNL K P Q+++ L+GP YH+ + P Sbjct: 491 RQLQSLENFSADPFTYDDHLYIKNNLLSKKLPQELLPNLSQEMYRLLTGPLSNYHTASFP 550 Query: 335 LS--YGKSFTCNIS 300 LS ++ C+++ Sbjct: 551 LSSNISMAYACDVA 564
>2ABB_RABIT (Q00006) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B beta isoform (PP2A, subunit B, B-beta isoform) (PP2A, subunit B, B55-beta isoform) (PP2A, subunit B, PR55-beta isoform) (PP2A, subunit B, R2-beta isoform) (Fragment) Length = 413 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + V N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 266 IMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVI 323
>2ABB_PONPY (Q5R4A2) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B beta isoform (PP2A, subunit B, B-beta isoform) (PP2A, subunit B, B55-beta isoform) (PP2A, subunit B, PR55-beta isoform) (PP2A, subunit B, R2-beta isoform) Length = 443 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + V N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 296 IMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVI 353
>2ABB_MOUSE (Q6ZWR4) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B beta isoform (PP2A, subunit B, B-beta isoform) (PP2A, subunit B, B55-beta isoform) (PP2A, subunit B, PR55-beta isoform) (PP2A, subunit B, R2-beta isoform) Length = 443 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + V N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 296 IMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVI 353
>2ABB_MACFA (Q4R8L3) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B beta isoform (PP2A, subunit B, B-beta isoform) (PP2A, subunit B, B55-beta isoform) (PP2A, subunit B, PR55-beta isoform) (PP2A, subunit B, R2-beta isoform) Length = 443 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + V N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 296 IMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVI 353
>2ABB_HUMAN (Q00005) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B beta isoform (PP2A, subunit B, B-beta isoform) (PP2A, subunit B, B55-beta isoform) (PP2A, subunit B, PR55-beta isoform) (PP2A, subunit B, R2-beta isoform) Length = 443 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + V N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 296 IMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVI 353
>2ABA_RAT (P36876) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B alpha isoform (PP2A, subunit B, B-alpha isoform) (PP2A, subunit B, B55-alpha isoform) (PP2A, subunit B, PR55-alpha isoform) (PP2A, subunit B, R2-alpha isoform) (PP2A, s Length = 447 Score = 29.3 bits (64), Expect = 6.3 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + V N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 300 MMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV 357
>2ABG_RABIT (P50410) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B gamma isoform (PP2A, subunit B, B-gamma isoform) (PP2A, subunit B, B55-gamma isoform) (PP2A, subunit B, PR55-gamma isoform) (PP2A, subunit B, R2-gamma isoform) Length = 447 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = -3 Query: 397 SKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 +++YL + V N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 298 TRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVI 353
>2ABG_MACFA (Q95LP0) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B gamma isoform (PP2A, subunit B, B-gamma isoform) (PP2A, subunit B, B55-gamma isoform) (PP2A, subunit B, PR55-gamma isoform) (PP2A, subunit B, R2-gamma isoform) Length = 447 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = -3 Query: 397 SKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 +++YL + V N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 298 TRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVI 353
>2ABG_HUMAN (Q9Y2T4) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B gamma isoform (PP2A, subunit B, B-gamma isoform) (PP2A, subunit B, B55-gamma isoform) (PP2A, subunit B, PR55-gamma isoform) (PP2A, subunit B, R2-gamma isoform) (IMYPN Length = 447 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = -3 Query: 397 SKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 +++YL + V N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 298 TRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVI 353
>2ABA_RABIT (P63150) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B alpha isoform (PP2A, subunit B, B-alpha isoform) (PP2A, subunit B, B55-alpha isoform) (PP2A, subunit B, PR55-alpha isoform) (PP2A, subunit B, R2-alpha isoform) Length = 447 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + + N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 300 MMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV 357
>2ABA_PIG (Q29090) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B alpha isoform (PP2A, subunit B, B-alpha isoform) (PP2A, subunit B, B55-alpha isoform) (PP2A, subunit B, PR55-alpha isoform) (PP2A, subunit B, R2-alpha isoform) (Fragmen Length = 426 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + + N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 279 MMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV 336
>2ABA_MOUSE (Q6P1F6) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B alpha isoform (PP2A, subunit B, B-alpha isoform) (PP2A, subunit B, B55-alpha isoform) (PP2A, subunit B, PR55-alpha isoform) (PP2A, subunit B, R2-alpha isoform) Length = 447 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + + N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 300 MMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV 357
>2ABA_MACFA (Q4R7Z4) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B alpha isoform (PP2A, subunit B, B-alpha isoform) (PP2A, subunit B, B55-alpha isoform) (PP2A, subunit B, PR55-alpha isoform) (PP2A, subunit B, R2-alpha isoform) Length = 447 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + + N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 300 MMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV 357
>2ABA_HUMAN (P63151) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B alpha isoform (PP2A, subunit B, B-alpha isoform) (PP2A, subunit B, B55-alpha isoform) (PP2A, subunit B, PR55-alpha isoform) (PP2A, subunit B, R2-alpha isoform) Length = 447 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 403 VQSKNYLYI*VDLTNSITPPPYLYHMERALR--VISLFRNDCIYWTIESKFNSTDIVL 236 + +++YL + + N P Y + LR + SL+ NDCI+ E +N +D V+ Sbjct: 300 MMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV 357
>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) Length = 753 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +3 Query: 69 CTQQDTSTSASAQK---KDPTNAQSHIKRVPQRLDENHKFL 182 CTQ+D + S + + P + + HIKR+ QR N FL Sbjct: 508 CTQEDAEVAESPLRILAETPDSFEKHIKRILQRSAANPAFL 548 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,832,669 Number of Sequences: 219361 Number of extensions: 1570245 Number of successful extensions: 4226 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4061 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4215 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
