ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPB1_RAT (Q64649) Phosphorylase b kinase alpha regulatory chain,... 33 0.44
2PDXJ_CHLTE (Q8KFJ5) Pyridoxal phosphate biosynthetic protein pdx... 31 2.2

>KPB1_RAT (Q64649) Phosphorylase b kinase alpha regulatory chain, skeletal|
            muscle isoform (Phosphorylase kinase alpha M subunit)
          Length = 1242

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
 Frame = -2

Query: 477  PELRSRGGRRN*LVL----FVSPRGACPLSFR*RNSICTP--TKQDAGSSFQQRRRLDG- 319
            PE ++ GG  + + L    F+SP      S     ++C P  +K      +Q+RRRLDG 
Sbjct: 1023 PESQTSGGHPSSIDLMSPTFLSPAACISASSGSFPTVCEPQTSKDSRQGQWQRRRRLDGA 1082

Query: 318  -SRDGCCLKDDAWCPAEDMSGLPILGYVMSCTSSR 217
             +R         W   +   GL + G+V+  +S+R
Sbjct: 1083 LNRVPIGFYQKVWKILQKCHGLSVEGFVLPSSSTR 1117



to top

>PDXJ_CHLTE (Q8KFJ5) Pyridoxal phosphate biosynthetic protein pdxJ (PNP|
           synthase)
          Length = 237

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -3

Query: 515 TLFIC*KEEAVEIQNSGQEEVEETSWFCLFHLGVLALCPSDEETAFARPR 366
           ++FI  +EEA+E+       + E      FH G  +LC SD++TA+   R
Sbjct: 128 SVFIEPEEEAIELAAEAGANIVE------FHTGTYSLCTSDKQTAYELER 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,019,746
Number of Sequences: 219361
Number of extensions: 1439287
Number of successful extensions: 3086
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3086
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top