ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066532.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 5e-38
2ref|XM_474219.1| Oryza sativa (japonica cultivar-group), predic... 163 8e-37
3gb|AY107013.1| Zea mays PCO106518 mRNA sequence 155 2e-34
4emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,... 119 1e-23
5emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4,... 119 1e-23
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
7gb|AF204787.1|AF204787 Lycopersicon esculentum ripening regulate... 50 0.008
8ref|NM_179542.2| Arabidopsis thaliana unknown protein AT1G70620 ... 44 0.50
9ref|NM_105730.3| Arabidopsis thaliana unknown protein AT1G70620 ... 44 0.50
10gb|AC125211.4| Mus musculus BAC clone RP23-128E9 from chromosome... 44 0.50
11gb|AC010796.7|AC010796 Arabidopsis thaliana chromosome 1 BAC F24... 44 0.50
12gb|AC011663.7|AC011663 Arabidopsis thaliana chromosome 1 BAC F5A... 44 0.50
13emb|AL591398.2| Human DNA sequence from clone RP11-81C12 on chro... 42 2.0
14emb|AL157774.14| Human DNA sequence from clone RP11-442L12 on ch... 42 2.0
15emb|AL603662.11| Mouse DNA sequence from clone RP23-396M19 on ch... 42 2.0
16emb|AL603830.7| Mouse DNA sequence from clone RP23-467E19 on chr... 42 2.0
17gb|AY129465.1| Homo sapiens polycystic kidney and hepatic diseas... 42 2.0
18gb|AC096627.28| Mus musculus strain C57BL/6J clone rp23-77b23 ma... 42 2.0
19gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J... 42 2.0
20gb|AC117993.1| Ciona savignyi, clone XX-1E4, complete sequence 40 7.8
21gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome ... 40 7.8
22ref|XM_636807.1| Dictyostelium discoideum hypothetical protein (... 40 7.8
23gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genom... 40 7.8
24gb|AE013212.1| Thermoanaerobacter tengcongensis MB4, section 239... 40 7.8
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.8
26ref|XM_823868.1| Trypanosoma brucei TREU927 hypothetical protein... 40 7.8
27emb|AL358073.24| Human DNA sequence from clone RP11-458I7 on chr... 40 7.8
28emb|AL008638.1|HS992D9 Human DNA sequence from clone CTA-992D9 o... 40 7.8
29gb|AC098591.4| Homo sapiens BAC clone RP11-333E13 from 4, comple... 40 7.8
30emb|BX664745.13| Zebrafish DNA sequence from clone DKEY-242A8 in... 40 7.8
31dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
33gb|AC012000.3| Homo sapiens BAC clone RP11-398K16 from 2, comple... 40 7.8
34dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
35gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, com... 40 7.8
36gb|AC144773.3| Mus musculus BAC clone RP24-176P22 from 1, comple... 40 7.8
37dbj|AP004103.1| Esox lucius mitochondrial DNA, complete genome 40 7.8
38emb|CR753832.8| Zebrafish DNA sequence from clone DKEY-71C18 in ... 40 7.8
39gb|AC159308.4| Mus musculus BAC clone RP23-187B11 from chromosom... 40 7.8
40dbj|AP004938.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 7.8
41gb|AC122767.16| Mus musculus chromosome 7, clone RP24-143L4, com... 40 7.8
42emb|AL713972.11| Mouse DNA sequence from clone RP23-305L4 on chr... 40 7.8 
>dbj|AK066532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073I20, full
            insert sequence
          Length = 3297

 Score =  167 bits (84), Expect = 5e-38
 Identities = 114/124 (91%)
 Strand = Plus / Minus

                                                                        
Query: 448  tcttctacctcctcttgaccggagttctggatctcgaccgcttcttcctttcagcagatg 507
            ||||||| || || ||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct: 2904 tcttctatcttcttttgactggagttctggatctggaacgcttcttcctttccgcagatg 2845

                                                                        
Query: 508  aataaggtgaatgcctgcggtgagaatgcttgctaggtggagaccgcgaaactcgtctgc 567
            ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 2844 aataaggcgaatgcctgcggtgagaatgcttgctatgtggagaccgcgaaactcgtctgt 2785

                
Query: 568  tcct 571
            ||||
Sbjct: 2784 tcct 2781
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>ref|XM_474219.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2592

 Score =  163 bits (82), Expect = 8e-37
 Identities = 103/110 (93%)
 Strand = Plus / Minus

                                                                        
Query: 462  ttgaccggagttctggatctcgaccgcttcttcctttcagcagatgaataaggtgaatgc 521
            ||||| |||||||||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct: 2582 ttgactggagttctggatctggaacgcttcttcctttccgcagatgaataaggcgaatgc 2523

                                                              
Query: 522  ctgcggtgagaatgcttgctaggtggagaccgcgaaactcgtctgctcct 571
            ||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 2522 ctgcggtgagaatgcttgctatgtggagaccgcgaaactcgtctgttcct 2473
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>gb|AY107013.1| Zea mays PCO106518 mRNA sequence
          Length = 833

 Score =  155 bits (78), Expect = 2e-34
 Identities = 108/118 (91%)
 Strand = Plus / Minus

                                                                       
Query: 449 cttctacctcctcttgaccggagttctggatctcgaccgcttcttcctttcagcagatga 508
           |||||| ||||| |||||||||||||| |||||||||||| |||||||  |||| |||||
Sbjct: 444 cttctatctccttttgaccggagttctcgatctcgaccgcctcttcctgccagccgatga 385

                                                                     
Query: 509 ataaggtgaatgcctgcggtgagaatgcttgctaggtggagaccgcgaaactcgtctg 566
           |||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 384 ataaggcgaatgcctgcggtgagaatgcttgctatgtggagaccgcgaaattcgtctg 327
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>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
             complete sequence
          Length = 163448

 Score =  119 bits (60), Expect = 1e-23
 Identities = 69/72 (95%)
 Strand = Plus / Plus

                                                                         
Query: 494   cctttcagcagatgaataaggtgaatgcctgcggtgagaatgcttgctaggtggagaccg 553
             |||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 11950 cctttccgcagatgaataaggcgaatgcctgcggtgagaatgcttgctatgtggagaccg 12009

                         
Query: 554   cgaaactcgtct 565
             ||||||||||||
Sbjct: 12010 cgaaactcgtct 12021



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 448   tcttctacctcctcttgaccggagttctggatctcgaccgcttcttcct 496
             ||||||| || || ||||| |||||||||||||| || |||||||||||
Sbjct: 11082 tcttctatcttcttttgactggagttctggatctggaacgcttcttcct 11130
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>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02,
              complete sequence
          Length = 153623

 Score =  119 bits (60), Expect = 1e-23
 Identities = 69/72 (95%)
 Strand = Plus / Plus

                                                                          
Query: 494    cctttcagcagatgaataaggtgaatgcctgcggtgagaatgcttgctaggtggagaccg 553
              |||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 150494 cctttccgcagatgaataaggcgaatgcctgcggtgagaatgcttgctatgtggagaccg 150553

                          
Query: 554    cgaaactcgtct 565
              ||||||||||||
Sbjct: 150554 cgaaactcgtct 150565



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                               
Query: 448    tcttctacctcctcttgaccggagttctggatctcgaccgcttcttcct 496
              ||||||| || || ||||| |||||||||||||| || |||||||||||
Sbjct: 149626 tcttctatcttcttttgactggagttctggatctggaacgcttcttcct 149674
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  119 bits (60), Expect = 1e-23
 Identities = 69/72 (95%)
 Strand = Plus / Plus

                                                                            
Query: 494      cctttcagcagatgaataaggtgaatgcctgcggtgagaatgcttgctaggtggagaccg 553
                |||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 33800051 cctttccgcagatgaataaggcgaatgcctgcggtgagaatgcttgctatgtggagaccg 33800110

                            
Query: 554      cgaaactcgtct 565
                ||||||||||||
Sbjct: 33800111 cgaaactcgtct 33800122



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 448      tcttctacctcctcttgaccggagttctggatctcgaccgcttcttcct 496
                ||||||| || || ||||| |||||||||||||| || |||||||||||
Sbjct: 33799183 tcttctatcttcttttgactggagttctggatctggaacgcttcttcct 33799231
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>gb|AF204787.1|AF204787 Lycopersicon esculentum ripening regulated protein DDTFR10
           (DDTFR10) mRNA, complete cds
          Length = 988

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 165 aatacaagtaataaaatagttaaaa 189
           |||||||||||||||||||||||||
Sbjct: 924 aatacaagtaataaaatagttaaaa 900
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>ref|NM_179542.2| Arabidopsis thaliana unknown protein AT1G70620 transcript variant
            AT1G70620.2 mRNA, complete cds
          Length = 3452

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 528  tgagaatgcttgctaggtggagaccgcgaa 557
            ||||||||||||||| |||| |||||||||
Sbjct: 2891 tgagaatgcttgctatgtggtgaccgcgaa 2862
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>ref|NM_105730.3| Arabidopsis thaliana unknown protein AT1G70620 transcript variant
            AT1G70620.1 mRNA, complete cds
          Length = 3111

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 528  tgagaatgcttgctaggtggagaccgcgaa 557
            ||||||||||||||| |||| |||||||||
Sbjct: 2668 tgagaatgcttgctatgtggtgaccgcgaa 2639
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>gb|AC125211.4| Mus musculus BAC clone RP23-128E9 from chromosome 6, complete sequence
          Length = 193979

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 426   aaacaaacaaaaccagctagtttctt 451
             ||||||||||||||||||| ||||||
Sbjct: 19432 aaacaaacaaaaccagctactttctt 19457
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>gb|AC010796.7|AC010796 Arabidopsis thaliana chromosome 1 BAC F24J13 genomic sequence, complete
             sequence
          Length = 87400

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 528   tgagaatgcttgctaggtggagaccgcgaa 557
             ||||||||||||||| |||| |||||||||
Sbjct: 80456 tgagaatgcttgctatgtggtgaccgcgaa 80427
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>gb|AC011663.7|AC011663 Arabidopsis thaliana chromosome 1 BAC F5A18 genomic sequence, complete
             sequence
          Length = 108582

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 528   tgagaatgcttgctaggtggagaccgcgaa 557
             ||||||||||||||| |||| |||||||||
Sbjct: 74046 tgagaatgcttgctatgtggtgaccgcgaa 74075
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>emb|AL591398.2| Human DNA sequence from clone RP11-81C12 on chromosome X Contains a
            pseudogene similar to part of mothers against
            decapentaplegic (MAD) homolog (Drosophila) interacting
            protein receptor activation anchor (MADHIP), complete
            sequence
          Length = 89973

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 158  aagagaaaatacaagtaataaaata 182
            ||||||||| |||||||||||||||
Sbjct: 4533 aagagaaaagacaagtaataaaata 4557
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>emb|AL157774.14| Human DNA sequence from clone RP11-442L12 on chromosome 6 Contains part
             of the PKHD1 gene for polycystic kidney and hepatic
             disease 1 (autosomal recessive) (TIG multiple domains-1,
             FCYT, ARPKD) and a CpG island, complete sequence
          Length = 154055

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 46    acctaattatgattcagggataggc 70
             ||||||| |||||||||||||||||
Sbjct: 62090 acctaatcatgattcagggataggc 62114
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>emb|AL603662.11| Mouse DNA sequence from clone RP23-396M19 on chromosome 11 Contains the
              3' end of the Myh10 gene for non-muscle myosin heavy chain
              10, the Ndel1 gene for nuclear distribution gene E-like
              homolog 1 (A. nidulans), three genes for novel proteins
              (9930039A11Rik, 1810012H11Rik and D130071N09), the Rpl26
              gene for ribosomal protein L26, gene Oppo1-pending (oppo
              1), gene RAN guanine nucleotide release factor
              (Rangnrf-pending) and three CpG islands, complete sequence
          Length = 201275

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 426    aaacaaacaaaaccagctagtttct 450
              ||||||||||||| |||||||||||
Sbjct: 193257 aaacaaacaaaacaagctagtttct 193233
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>emb|AL603830.7| Mouse DNA sequence from clone RP23-467E19 on chromosome 11 Contains the
             Map2k3 gene for mitogen activated protein kinase kinase 3,
             the Gtlf3a gene for gene trap locus F3a, the Gtlf3b gene
             for gene trap locus F3b and two CpG islands, complete
             sequence
          Length = 104771

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 426   aaacaaacaaaaccagctagt 446
             |||||||||||||||||||||
Sbjct: 66076 aaacaaacaaaaccagctagt 66096
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>gb|AY129465.1| Homo sapiens polycystic kidney and hepatic disease 1 (PKHD1) gene,
              complete cds, alternatively spliced
          Length = 469514

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 46     acctaattatgattcagggataggc 70
              ||||||| |||||||||||||||||
Sbjct: 341710 acctaatcatgattcagggataggc 341686
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>gb|AC096627.28| Mus musculus strain C57BL/6J clone rp23-77b23 map 11, complete sequence
          Length = 264908

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 426    aaacaaacaaaaccagctagt 446
              |||||||||||||||||||||
Sbjct: 113387 aaacaaacaaaaccagctagt 113367
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>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete
             sequence
          Length = 93234

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 132   cttgcatactaataatacatg 152
             |||||||||||||||||||||
Sbjct: 54318 cttgcatactaataatacatg 54338
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>gb|AC117993.1| Ciona savignyi, clone XX-1E4, complete sequence
          Length = 50129

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   caagtaataaaatagttaaa 188
             ||||||||||||||||||||
Sbjct: 15957 caagtaataaaatagttaaa 15976
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>gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome 1, complete sequence
          Length = 185692

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   cttcttcctttcagcagatg 507
             ||||||||||||||||||||
Sbjct: 93077 cttcttcctttcagcagatg 93058
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>ref|XM_636807.1| Dictyostelium discoideum hypothetical protein (DDB0215292), partial
            mRNA
          Length = 2328

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 162  gaaaatacaagtaataaaatagttaaaa 189
            ||||||||||||||||||| | ||||||
Sbjct: 1261 gaaaatacaagtaataaaagatttaaaa 1288
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>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete
             sequence
          Length = 137220

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   acaagtaataaaatagttaa 187
             ||||||||||||||||||||
Sbjct: 19944 acaagtaataaaatagttaa 19925
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>gb|AE013212.1| Thermoanaerobacter tengcongensis MB4, section 239 of 244 of the
             complete genome
          Length = 13761

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   gaaaatacaagtaataaaat 181
             ||||||||||||||||||||
Sbjct: 11084 gaaaatacaagtaataaaat 11103
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 168      acaagtaataaaatagttaa 187
                ||||||||||||||||||||
Sbjct: 17297567 acaagtaataaaatagttaa 17297548
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>ref|XM_823868.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.0690)
            partial mRNA
          Length = 3738

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 6    taagataaattacatgtgga 25
            ||||||||||||||||||||
Sbjct: 2658 taagataaattacatgtgga 2677
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>emb|AL358073.24| Human DNA sequence from clone RP11-458I7 on chromosome 1 Contains the 5'
              end of the ZA20D1 gene for zinc finger, A20 domain
              containing 1, a ribosomal protein L6 (RPL6) pseudogene, the
              VPS45A gene for vacuolar protein sorting 45A (yeast), the
              gene for CK2 interacting protein 1; HQ0024c protein
              (CKIP-1), a novel gene and a CpG island, complete sequence
          Length = 188211

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    aagagaaaatacaagtaata 177
              ||||||||||||||||||||
Sbjct: 128123 aagagaaaatacaagtaata 128104
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>emb|AL008638.1|HS992D9 Human DNA sequence from clone CTA-992D9 on chromosome 22q12.1,
            complete sequence
          Length = 155147

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  acaaaaccagctagtttctt 451
            ||||||||||||||||||||
Sbjct: 5758 acaaaaccagctagtttctt 5777
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>gb|AC098591.4| Homo sapiens BAC clone RP11-333E13 from 4, complete sequence
          Length = 179641

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   aaaatacaagtaataaaata 182
             ||||||||||||||||||||
Sbjct: 79016 aaaatacaagtaataaaata 78997
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>emb|BX664745.13| Zebrafish DNA sequence from clone DKEY-242A8 in linkage group 23,
              complete sequence
          Length = 261934

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 429    caaacaaaaccagctagttt 448
              ||||||||||||||||||||
Sbjct: 167235 caaacaaaaccagctagttt 167216
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 168      acaagtaataaaatagttaa 187
                ||||||||||||||||||||
Sbjct: 17291108 acaagtaataaaatagttaa 17291089
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 160      gagaaaatacaagtaataaa 179
                ||||||||||||||||||||
Sbjct: 41949023 gagaaaatacaagtaataaa 41949004
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>gb|AC012000.3| Homo sapiens BAC clone RP11-398K16 from 2, complete sequence
          Length = 194472

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    aatacaagtaataaaatagt 184
              ||||||||||||||||||||
Sbjct: 157203 aatacaagtaataaaatagt 157184
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>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431G06
          Length = 140466

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   gagaaaatacaagtaataaa 179
             ||||||||||||||||||||
Sbjct: 51100 gagaaaatacaagtaataaa 51081
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>gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, complete sequence
          Length = 257730

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   cttcttcctttcagcagatg 507
             ||||||||||||||||||||
Sbjct: 47130 cttcttcctttcagcagatg 47111
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>gb|AC144773.3| Mus musculus BAC clone RP24-176P22 from 1, complete sequence
          Length = 167510

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   aaacaaacaaaaccagctag 445
             ||||||||||||||||||||
Sbjct: 73363 aaacaaacaaaaccagctag 73344
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>dbj|AP004103.1| Esox lucius mitochondrial DNA, complete genome
          Length = 16695

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 318   agccgtcgagtcgtcttctttgtt 341
             |||| |||||||||||||||||||
Sbjct: 13195 agccttcgagtcgtcttctttgtt 13218
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>emb|CR753832.8| Zebrafish DNA sequence from clone DKEY-71C18 in linkage group 5,
             complete sequence
          Length = 122496

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 163   aaaatacaagtaataaaatagttaaaag 190
             |||||| |||||||||||||| ||||||
Sbjct: 40907 aaaataaaagtaataaaatagataaaag 40880
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>gb|AC159308.4| Mus musculus BAC clone RP23-187B11 from chromosome 9, complete sequence
          Length = 217927

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     tggaggcctgcaacacattt 41
              ||||||||||||||||||||
Sbjct: 165643 tggaggcctgcaacacattt 165624
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>dbj|AP004938.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT08M07, TM0096b,
             complete sequence
          Length = 65932

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cttgtacaagacattacata 243
             ||||||||||||||||||||
Sbjct: 56507 cttgtacaagacattacata 56488
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>gb|AC122767.16| Mus musculus chromosome 7, clone RP24-143L4, complete sequence
          Length = 192484

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   aggtgaaacaaacaaaacca 440
             ||||||||||||||||||||
Sbjct: 76786 aggtgaaacaaacaaaacca 76767
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>emb|AL713972.11| Mouse DNA sequence from clone RP23-305L4 on chromosome X, complete
              sequence
          Length = 201476

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 157    taagagaaaatacaagtaataaaa 180
              ||||| ||||||||||||||||||
Sbjct: 186764 taagaaaaaatacaagtaataaaa 186787


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,565,278
Number of Sequences: 3902068
Number of extensions: 6565278
Number of successful extensions: 116988
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116785
Number of HSP's gapped (non-prelim): 203
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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