ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19f19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK070838.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
2gb|BT018666.1| Zea mays clone EL01N0510C04.d mRNA sequence 228 1e-56
3gb|AY104376.1| Zea mays PCO082841 mRNA sequence 228 1e-56
4dbj|AK104688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
5dbj|AK068760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
6dbj|AK067567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
8dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
9dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
10ref|NM_188595.1| Oryza sativa (japonica cultivar-group), predic... 119 9e-24
11gb|BT017334.1| Zea mays clone EL01N0321B01.c mRNA sequence 113 6e-22
12gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
14gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 44 0.42
15emb|Z69380.1|SPAC4H3 S.pombe chromosome I cosmid c4H3 42 1.7
16emb|AL049543.17|HS1186N24 Human DNA sequence from clone RP5-1186... 42 1.7
17gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7... 42 1.7
18gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.6
19gb|AC186170.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 6.6
20gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete se... 40 6.6
21gb|AC116478.14| Mus musculus chromosome 8, clone RP23-396E23, co... 40 6.6
22gb|AC132597.3| Mus musculus BAC clone RP24-180D17 from chromosom... 40 6.6
23gb|AC156993.3| Mus musculus chromosome 8, clone RP23-79L16, comp... 40 6.6
24gb|AC159098.6| Mus musculus chromosome 8, clone RP24-391C9, comp... 40 6.6
25gb|AC116363.2| Homo sapiens chromosome 5 clone RP11-758E17, comp... 40 6.6
26gb|AC092288.3| Homo sapiens chromosome 5 clone CTD-2293K3, compl... 40 6.6
27gb|AC109494.3| Homo sapiens chromosome 5 clone RP11-783J1, compl... 40 6.6
28gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, co... 40 6.6

>dbj|AK070838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073J07, full
            insert sequence
          Length = 1877

 Score =  293 bits (148), Expect = 3e-76
 Identities = 259/296 (87%)
 Strand = Plus / Minus

                                                                        
Query: 184  taccatgctcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaa 243
            ||||| |||||||||| |||||| || |||| |||| ||||  |||| ||||||||||||
Sbjct: 1605 taccaggctcagtcaaactgtactttctccagttcaccaatcatttcctcaaactttaaa 1546

                                                                        
Query: 244  atctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaata 303
            |||||||| |||||||| || |||||||||||| | |  |||||||||| ||||||||||
Sbjct: 1545 atctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgacatgaata 1486

                                                                        
Query: 304  acatcctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtca 363
            |||||||| ||||| ||||||||||||||||| ||||| ||||| || |||||| |||||
Sbjct: 1485 acatcctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtca 1426

                                                                        
Query: 364  actgcatgcattttgtgcttgtacgtcataagaatagacctaagtgttgcctcatccatt 423
            ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |
Sbjct: 1425 actgcatgcattttgtgcttgtacgtcatcaggatagacctaagcgttgcctcatccact 1366

                                                                    
Query: 424  tccatatactgggcaagtttggtaatggtaattgctgagtataactttagatagct 479
            |||||||| || |||||||||| ||| || |||| ||| || || |||||||||||
Sbjct: 1365 tccatatattgcgcaagtttggcaatagttattgttgaatacaattttagatagct 1310



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>gb|BT018666.1| Zea mays clone EL01N0510C04.d mRNA sequence
          Length = 1646

 Score =  228 bits (115), Expect = 1e-56
 Identities = 247/291 (84%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaaatctgtct 251
            |||||||||||||||||| |||| |||| ||||  |||| |||||||| ||||| |||||
Sbjct: 1575 tcagtcaagctgtaccttctccagttcaccaatcatttcctcaaacttcaaaatttgtct 1516

                                                                        
Query: 252  taaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaataacatcctc 311
             |||||||| || ||||| |||||||| |  ||||||||||| |||||||| ||||||||
Sbjct: 1515 caaaaagtaatcaccatgacgcttggtaggtttggactccacaacatgaatcacatcctc 1456

                                                                        
Query: 312  attaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactgcatg 371
                || ||||| |||||||||||||| ||||| || || || | |||||||||||||||
Sbjct: 1455 gacgatgtagaagtcaaagtctgcacttgatactatctttccttcactgtcaactgcatg 1396

                                                                        
Query: 372  cattttgtgcttgtacgtcataagaatagacctaagtgttgcctcatccatttccatata 431
            ||||||||||||||| ||||| || || ||||| |||||||| ||||||| |||||||||
Sbjct: 1395 cattttgtgcttgtatgtcatcaggatcgaccttagtgttgcttcatccacttccatata 1336

                                                               
Query: 432  ctgggcaagtttggtaatggtaattgctgagtataactttagatagctccg 482
             |||||||||||| ||||||| |||| ||| |||| ||| ||||| |||||
Sbjct: 1335 ttgggcaagtttgctaatggttattgttgaatatagcttcagataactccg 1285



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>gb|AY104376.1| Zea mays PCO082841 mRNA sequence
          Length = 1869

 Score =  228 bits (115), Expect = 1e-56
 Identities = 247/291 (84%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaaatctgtct 251
            |||||||||||||||||| |||| |||| ||||  |||| |||||||| ||||| |||||
Sbjct: 1665 tcagtcaagctgtaccttctccagttcaccaatcatttcctcaaacttcaaaatttgtct 1606

                                                                        
Query: 252  taaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaataacatcctc 311
             |||||||| || ||||| |||||||| |  ||||||||||| |||||||| ||||||||
Sbjct: 1605 caaaaagtaatcaccatgacgcttggtaggtttggactccacaacatgaatcacatcctc 1546

                                                                        
Query: 312  attaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactgcatg 371
                || ||||| |||||||||||||| ||||| || || || | |||||||||||||||
Sbjct: 1545 gacgatgtagaagtcaaagtctgcacttgatactatctttccttcactgtcaactgcatg 1486

                                                                        
Query: 372  cattttgtgcttgtacgtcataagaatagacctaagtgttgcctcatccatttccatata 431
            ||||||||||||||| ||||| || || ||||| |||||||| ||||||| |||||||||
Sbjct: 1485 cattttgtgcttgtatgtcatcaggatcgaccttagtgttgcttcatccacttccatata 1426

                                                               
Query: 432  ctgggcaagtttggtaatggtaattgctgagtataactttagatagctccg 482
             |||||||||||| ||||||| |||| ||| |||| ||| ||||| |||||
Sbjct: 1425 ttgggcaagtttgctaatggttattgttgaatatagcttcagataactccg 1375



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>dbj|AK104688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F08, full
           insert sequence
          Length = 1242

 Score =  135 bits (68), Expect = 2e-28
 Identities = 176/212 (83%)
 Strand = Plus / Minus

                                                                       
Query: 232 tcaaactttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactcc 291
           |||||||| ||||||||||| |||||||| || ||||||  ||||||  ||||||| || 
Sbjct: 985 tcaaacttcaaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattca 926

                                                                       
Query: 292 acgacatgaataacatcctcattaatatagaaatcaaagtctgcactggatacaattttc 351
           || ||||||||||  ||||||| ||||||||| |||||||||||||||||||  |  || 
Sbjct: 925 acaacatgaataatgtcctcatcaatatagaagtcaaagtctgcactggatatgaccttt 866

                                                                       
Query: 352 ccattactgtcaactgcatgcattttgtgcttgtacgtcataagaatagacctaagtgtt 411
           || | |||||| | || |||||||||||||||||| ||||||||||| | ||| ||||| 
Sbjct: 865 ccgtcactgtcgattgaatgcattttgtgcttgtatgtcataagaattgtccttagtgta 806

                                           
Query: 412 gcctcatccatttccatatactgggcaagttt 443
            |||||||||  ||||| || | |||||||||
Sbjct: 805 acctcatccacatccatgtatttggcaagttt 774



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>dbj|AK068760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160I02, full
            insert sequence
          Length = 1948

 Score =  135 bits (68), Expect = 2e-28
 Identities = 176/212 (83%)
 Strand = Plus / Minus

                                                                        
Query: 232  tcaaactttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactcc 291
            |||||||| ||||||||||| |||||||| || ||||||  ||||||  ||||||| || 
Sbjct: 1553 tcaaacttcaaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattca 1494

                                                                        
Query: 292  acgacatgaataacatcctcattaatatagaaatcaaagtctgcactggatacaattttc 351
            || ||||||||||  ||||||| ||||||||| |||||||||||||||||||  |  || 
Sbjct: 1493 acaacatgaataatgtcctcatcaatatagaagtcaaagtctgcactggatatgaccttt 1434

                                                                        
Query: 352  ccattactgtcaactgcatgcattttgtgcttgtacgtcataagaatagacctaagtgtt 411
            || | |||||| | || |||||||||||||||||| ||||||||||| | ||| ||||| 
Sbjct: 1433 ccgtcactgtcgattgaatgcattttgtgcttgtatgtcataagaattgtccttagtgta 1374

                                            
Query: 412  gcctcatccatttccatatactgggcaagttt 443
             |||||||||  ||||| || | |||||||||
Sbjct: 1373 acctcatccacatccatgtatttggcaagttt 1342



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>dbj|AK067567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108C14, full
            insert sequence
          Length = 1950

 Score =  135 bits (68), Expect = 2e-28
 Identities = 176/212 (83%)
 Strand = Plus / Minus

                                                                        
Query: 232  tcaaactttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactcc 291
            |||||||| ||||||||||| |||||||| || ||||||  ||||||  ||||||| || 
Sbjct: 1598 tcaaacttcaaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattca 1539

                                                                        
Query: 292  acgacatgaataacatcctcattaatatagaaatcaaagtctgcactggatacaattttc 351
            || ||||||||||  ||||||| ||||||||| |||||||||||||||||||  |  || 
Sbjct: 1538 acaacatgaataatgtcctcatcaatatagaagtcaaagtctgcactggatatgaccttt 1479

                                                                        
Query: 352  ccattactgtcaactgcatgcattttgtgcttgtacgtcataagaatagacctaagtgtt 411
            || | |||||| | || |||||||||||||||||| ||||||||||| | ||| ||||| 
Sbjct: 1478 ccgtcactgtcgattgaatgcattttgtgcttgtatgtcataagaattgtccttagtgta 1419

                                            
Query: 412  gcctcatccatttccatatactgggcaagttt 443
             |||||||||  ||||| || | |||||||||
Sbjct: 1418 acctcatccacatccatgtatttggcaagttt 1387



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                           
Query: 308     cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 367
               |||| ||||| ||||||||||||||||| ||||| ||||| || |||||| |||||||||
Sbjct: 7125256 cctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactg 7125315

                                                    
Query: 368     catgcattttgtgcttgtacgtcataagaatagacct 404
               ||||||||||||||||||||||||| || ||||||||
Sbjct: 7125316 catgcattttgtgcttgtacgtcatcaggatagacct 7125352



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                           
Query: 237     ctttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgac 296
               ||||||||||||||| |||||||| || |||||||||||| | |  |||||||||| |||
Sbjct: 7124854 ctttaaaatctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgac 7124913

                             
Query: 297     atgaataacatcct 310
               ||||||||||||||
Sbjct: 7124914 atgaataacatcct 7124927



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                           
Query: 399     agacctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgc 458
               ||||||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| 
Sbjct: 7125420 agacctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgt 7125479

                                    
Query: 459     tgagtataactttagatagct 479
               ||| || || |||||||||||
Sbjct: 7125480 tgaatacaattttagatagct 7125500



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>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                         
Query: 308   cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 367
             |||| ||||| ||||||||||||||||| ||||| ||||| || |||||| |||||||||
Sbjct: 19904 cctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactg 19963

                                                  
Query: 368   catgcattttgtgcttgtacgtcataagaatagacct 404
             ||||||||||||||||||||||||| || ||||||||
Sbjct: 19964 catgcattttgtgcttgtacgtcatcaggatagacct 20000



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 237   ctttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgac 296
             ||||||||||||||| |||||||| || |||||||||||| | |  |||||||||| |||
Sbjct: 19502 ctttaaaatctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgac 19561

                           
Query: 297   atgaataacatcct 310
             ||||||||||||||
Sbjct: 19562 atgaataacatcct 19575



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                         
Query: 399   agacctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgc 458
             ||||||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| 
Sbjct: 20068 agacctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgt 20127

                                  
Query: 459   tgagtataactttagatagct 479
             ||| || || |||||||||||
Sbjct: 20128 tgaatacaattttagatagct 20148



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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0452F10
          Length = 145120

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                          
Query: 308    cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 367
              |||| ||||| ||||||||||||||||| ||||| ||||| || |||||| |||||||||
Sbjct: 112836 cctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactg 112895

                                                   
Query: 368    catgcattttgtgcttgtacgtcataagaatagacct 404
              ||||||||||||||||||||||||| || ||||||||
Sbjct: 112896 catgcattttgtgcttgtacgtcatcaggatagacct 112932



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                          
Query: 237    ctttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgac 296
              ||||||||||||||| |||||||| || |||||||||||| | |  |||||||||| |||
Sbjct: 112434 ctttaaaatctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgac 112493

                            
Query: 297    atgaataacatcct 310
              ||||||||||||||
Sbjct: 112494 atgaataacatcct 112507



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                          
Query: 399    agacctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgc 458
              ||||||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| 
Sbjct: 113000 agacctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgt 113059

                                   
Query: 459    tgagtataactttagatagct 479
              ||| || || |||||||||||
Sbjct: 113060 tgaatacaattttagatagct 113080



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>ref|NM_188595.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1698

 Score =  119 bits (60), Expect = 9e-24
 Identities = 84/92 (91%)
 Strand = Plus / Minus

                                                                        
Query: 313  ttaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactgcatgc 372
            ||||| ||||||||||||||||| ||||| ||||| || |||||| ||||||||||||||
Sbjct: 1478 ttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactgcatgc 1419

                                            
Query: 373  attttgtgcttgtacgtcataagaatagacct 404
            |||||||||||||||||||| || ||||||||
Sbjct: 1418 attttgtgcttgtacgtcatcaggatagacct 1387



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 402  cctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgctga 461
            |||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| |||
Sbjct: 1356 cctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgttga 1297

                              
Query: 462  gtataactttagatagct 479
             || || |||||||||||
Sbjct: 1296 atacaattttagatagct 1279



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>gb|BT017334.1| Zea mays clone EL01N0321B01.c mRNA sequence
          Length = 320

 Score =  113 bits (57), Expect = 6e-22
 Identities = 129/153 (84%)
 Strand = Plus / Minus

                                                                       
Query: 192 tcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaaatctgtct 251
           |||||||||||||||||| |||| |||| ||||  |||| |||||||| ||||| |||||
Sbjct: 178 tcagtcaagctgtaccttctccagttcaccaatcatttcctcaaacttcaaaatttgtct 119

                                                                       
Query: 252 taaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaataacatcctc 311
            |||||||| || ||||| |||||||| |  ||||||||||| |||||||| ||||||||
Sbjct: 118 caaaaagtaatcaccatgacgcttggtaggtttggactccacaacatgaatcacatcctc 59

                                            
Query: 312 attaatatagaaatcaaagtctgcactggatac 344
               || ||||| |||||||||||||| |||||
Sbjct: 58  gacgatgtagaagtcaaagtctgcacttgatac 26



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>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10,
             complete sequence
          Length = 138209

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                         
Query: 308   cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 367
             |||||| ||||||||| |||||||||||||||||||  |  || || | |||||| | ||
Sbjct: 99750 cctcatcaatatagaagtcaaagtctgcactggatatgacctttccgtcactgtcgattg 99809

                                            
Query: 368   catgcattttgtgcttgtacgtcataagaat 398
              |||||||||||||||||| |||||||||||
Sbjct: 99810 aatgcattttgtgcttgtatgtcataagaat 99840



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                         
Query: 241   aaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgacatga 300
             ||||||||||| |||||||| || ||||||  ||||||  ||||||| || || ||||||
Sbjct: 98668 aaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattcaacaacatga 98727

                 
Query: 301   ataa 304
             ||||
Sbjct: 98728 ataa 98731



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                           
Query: 308     cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 367
               |||||| ||||||||| |||||||||||||||||||  |  || || | |||||| | ||
Sbjct: 7663355 cctcatcaatatagaagtcaaagtctgcactggatatgacctttccgtcactgtcgattg 7663414

                                              
Query: 368     catgcattttgtgcttgtacgtcataagaat 398
                |||||||||||||||||| |||||||||||
Sbjct: 7663415 aatgcattttgtgcttgtatgtcataagaat 7663445



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                           
Query: 241     aaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgacatga 300
               ||||||||||| |||||||| || ||||||  ||||||  ||||||| || || ||||||
Sbjct: 7662273 aaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattcaacaacatga 7662332

                   
Query: 301     ataa 304
               ||||
Sbjct: 7662333 ataa 7662336



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 403     ctaagtgttgcctcatccattt 424
               ||||||||||||||||||||||
Sbjct: 2721786 ctaagtgttgcctcatccattt 2721765



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>emb|Z69380.1|SPAC4H3 S.pombe chromosome I cosmid c4H3
          Length = 34635

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 415   tcatccatttccatatactgg 435
             |||||||||||||||||||||
Sbjct: 20711 tcatccatttccatatactgg 20691



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>emb|AL049543.17|HS1186N24 Human DNA sequence from clone RP5-1186N24 on chromosome 6p21.2-22.2.
             Contains part of a novel zinc finger protein gene, the
             GPX5 gene for glutathione peroxidase 5 (epididymal
             androgen-related protein), the 5' end of a glutathion
             peroxidase pseudogene, ESTs, STSs, GSSs and a CpG island,
             complete sequence
          Length = 95594

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 238   tttaaaatctgtcttaaaaagtagt 262
             |||||||| ||||||||||||||||
Sbjct: 87604 tttaaaatttgtcttaaaaagtagt 87580



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>gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence
          Length = 187543

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 238    tttaaaatctgtcttaaaaagtagt 262
              |||||||| ||||||||||||||||
Sbjct: 181707 tttaaaatttgtcttaaaaagtagt 181731



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    tgtttctctcctcgatgatc 181
              ||||||||||||||||||||
Sbjct: 658599 tgtttctctcctcgatgatc 658580



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>gb|AC186170.1| Ornithorhynchus anatinus chromosome UNK clone OABb-12B13, complete
             sequence
          Length = 134720

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 431   actgggcaagtttggtaatggtaattgctgag 462
             |||||||| || |||||||||||| |||||||
Sbjct: 44537 actgggcaggtgtggtaatggtaactgctgag 44568



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>gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete sequence
          Length = 398525

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   tttcttcaaactttaaaatc 246
             ||||||||||||||||||||
Sbjct: 25363 tttcttcaaactttaaaatc 25344



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>gb|AC116478.14| Mus musculus chromosome 8, clone RP23-396E23, complete sequence
          Length = 193468

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     caggataatacagtgaattg 44
              ||||||||||||||||||||
Sbjct: 144561 caggataatacagtgaattg 144542



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>gb|AC132597.3| Mus musculus BAC clone RP24-180D17 from chromosome 5, complete sequence
          Length = 162871

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   tgcatgcattttgtgcttgt 385
             ||||||||||||||||||||
Sbjct: 35874 tgcatgcattttgtgcttgt 35893



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>gb|AC156993.3| Mus musculus chromosome 8, clone RP23-79L16, complete sequence
          Length = 145880

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    caggataatacagtgaattg 44
             ||||||||||||||||||||
Sbjct: 92854 caggataatacagtgaattg 92873



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>gb|AC159098.6| Mus musculus chromosome 8, clone RP24-391C9, complete sequence
          Length = 184137

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   caggataatacagtgaattg 44
            ||||||||||||||||||||
Sbjct: 1854 caggataatacagtgaattg 1873



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>gb|AC116363.2| Homo sapiens chromosome 5 clone RP11-758E17, complete sequence
          Length = 194619

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   ttcttcaaactttaaaatct 247
             ||||||||||||||||||||
Sbjct: 80314 ttcttcaaactttaaaatct 80295



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>gb|AC092288.3| Homo sapiens chromosome 5 clone CTD-2293K3, complete sequence
          Length = 93844

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   ttcttcaaactttaaaatct 247
             ||||||||||||||||||||
Sbjct: 16057 ttcttcaaactttaaaatct 16038



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>gb|AC109494.3| Homo sapiens chromosome 5 clone RP11-783J1, complete sequence
          Length = 172180

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   ttcttcaaactttaaaatct 247
             ||||||||||||||||||||
Sbjct: 39966 ttcttcaaactttaaaatct 39985



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>gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, complete sequence
          Length = 190133

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   tttaaaatctgtcttaaaaa 257
             ||||||||||||||||||||
Sbjct: 61231 tttaaaatctgtcttaaaaa 61212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,150,765
Number of Sequences: 3902068
Number of extensions: 4150765
Number of successful extensions: 87479
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87315
Number of HSP's gapped (non-prelim): 156
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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