ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19f16 |
|---|---|
| Clone Library Name | barley_pub |
>N2B_HAEIR (P46441) Putative ATPase N2B (HFN2B)| Length = 464 Score = 58.5 bits (140), Expect = 1e-08 Identities = 40/104 (38%), Positives = 57/104 (54%) Frame = -1 Query: 608 RRFITLIDEMYNHHCRLICLATLPIDNLFQGTEEGPLFDLESFQFETEAEGSKLRRDVSA 429 RRFITLID +Y++ R++ A +P+D LF T++ DL A+ ++ D Sbjct: 372 RRFITLIDTLYDNRVRVVISAEVPLDQLFSFTDKPK--DL--------ADEQRMLMDDLK 421 Query: 428 EGNVGVGPSTKGLVSMLSGQEEMFAFRRAISRLIEMQTPLYLER 297 G+ T S+ +G+EEMFAF R ISRL EMQ Y E+ Sbjct: 422 LGD------TDTSASVFTGEEEMFAFDRTISRLYEMQKKEYWEQ 459
>YHCM_ECOLI (P64612) Hypothetical protein yhcM| Length = 375 Score = 37.0 bits (84), Expect = 0.045 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = -1 Query: 608 RRFITLIDEMYNHHCRLICLATLPIDNLFQG 516 RRFI L+DE Y H +L+ A +P+ ++QG Sbjct: 315 RRFIALVDEFYERHVKLVVSAEVPLYEIYQG 345
>YHCM_ECO57 (P64613) Hypothetical protein yhcM| Length = 375 Score = 37.0 bits (84), Expect = 0.045 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = -1 Query: 608 RRFITLIDEMYNHHCRLICLATLPIDNLFQG 516 RRFI L+DE Y H +L+ A +P+ ++QG Sbjct: 315 RRFIALVDEFYERHVKLVVSAEVPLYEIYQG 345
>TGFB1_CAVPO (Q9Z1Y6) Transforming growth factor beta-1 precursor (TGF-beta-1)| [Contains: Latency-associated peptide (LAP)] Length = 390 Score = 35.0 bits (79), Expect = 0.17 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = -1 Query: 494 DLESFQFETEAEGSKLRRDVSAEGNVGVGPSTKGLVSMLSGQEEMFAFRRAISRLIEMQT 315 +LE F+F + E N G+GP +G ++ + G F L+ M T Sbjct: 213 ELEGFRFSAHCSCDSKDNTLRVEIN-GIGPKRRGDLAAIHGMNRPF--------LLLMAT 263 Query: 314 PLYLERVQHVHSS 276 PL ER QH+HSS Sbjct: 264 PL--ERAQHLHSS 274
>AFG1_YEAST (P32317) Protein AFG1| Length = 509 Score = 32.7 bits (73), Expect = 0.85 Identities = 28/98 (28%), Positives = 39/98 (39%) Frame = -1 Query: 608 RRFITLIDEMYNHHCRLICLATLPIDNLFQGTEEGPLFDLESFQFETEAEGSKLRRDVSA 429 RRFIT +D +Y+ +L +LF E+ L D E E + Sbjct: 404 RRFITFLDAVYDSGGKLATTGAADFSSLFVEPEQ-ILNDFELRPTTKEPDSVDTGMVDEM 462 Query: 428 EGNVGVGPSTKGLVSMLSGQEEMFAFRRAISRLIEMQT 315 G M + EE FAF RA+SRL +M + Sbjct: 463 VEKHGFSKEIAKKSQMFALDEERFAFARALSRLSQMSS 500
>XYNB_BACST (Q9ZFM2) Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan| xylohydrolase) (Xylan 1,4-beta-xylosidase) Length = 504 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Frame = +1 Query: 70 LLISLVLHTYTRYSFRQCRAWLLQP-HSPTFPRLFLQERIEWYYQVYK--GAD*ETVLCF 240 L++++V H RY + R WL + + P + + Y+++Y+ ++V Sbjct: 133 LIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPH 192 Query: 241 VRTGAPCCC*SPEEW 285 ++ G P C +EW Sbjct: 193 LQVGGPAICGGSDEW 207
>Y2094_SHIFL (P37787) Hypothetical protein SF2094/S2216 (ORF10X9)| Length = 163 Score = 31.6 bits (70), Expect = 1.9 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = -1 Query: 482 FQFETEAEGSKLR-RDVSAEGNVGVGPSTKGLVSMLSGQEEMFAFRRAISRLIEMQTPLY 306 F+ ETE L R E N G ++G VS LS + F + I +L ++ PLY Sbjct: 23 FEIETELTIHALELRMKYGEVNTKYGERSEGSVSKLSTWSDGFKILKTIIKLYSLERPLY 82 Query: 305 LERVQHVHSSGLQQQQGAPVL 243 + V + L G P++ Sbjct: 83 FFSIIGVLLAALSIILGLPII 103
>R13L4_ARATH (Q38834) Putative disease resistance RPP13-like protein 4| Length = 852 Score = 30.8 bits (68), Expect = 3.2 Identities = 25/99 (25%), Positives = 48/99 (48%) Frame = -2 Query: 382 CCLVKKRCLRSEGRYLGS*KCRPRCISSVSSMSILLGFNNSRAPLFSQNRALSLSLLPCR 203 C ++ K+ L + GS +C P+ I S+ + +LLGF +R+ N LS + Sbjct: 629 CIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARS-----NNGCKLSEV--- 680 Query: 202 LGSTILFVPVKIISETSGNEVGEAKLDIVGNCIEYMYVT 86 + + +S T G+++ E +LD + N + M ++ Sbjct: 681 --KNLTNLRKLGLSLTRGDQIEEEELDSLINLSKLMSIS 717
>SIM1_HUMAN (P81133) Single-minded homolog 1| Length = 766 Score = 30.4 bits (67), Expect = 4.2 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 10/84 (11%) Frame = -2 Query: 274 GFNNSRAPLFSQNRALSLSLLPCRLGSTILFVP---VKIISETSGNEVGEAKLDIVGNCI 104 G ++ +PL + R L LL G + P + ISET+ +G +++++ GN I Sbjct: 65 GHSSRTSPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSI 124 Query: 103 -EYMY------VTQVISARHPVAS 53 EY++ +T V++A P S Sbjct: 125 YEYIHPADHDEMTAVLTAHQPYHS 148
>TAOK3_MOUSE (Q8BYC6) Serine/threonine-protein kinase TAO3 (EC 2.7.11.1)| (Thousand and one amino acid protein 3) Length = 898 Score = 30.0 bits (66), Expect = 5.5 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = -1 Query: 527 LFQGTEEGPLFDLESFQFETEAEGSKLRRDVSAEGNVGVGPST 399 LFQ T GPL + + + + E +GS L R+V + G++ PST Sbjct: 312 LFQETRNGPLNESQEEEEDGE-QGSNLNREVDSLGSIHSIPST 353
>SIM1_MOUSE (Q61045) Single-minded homolog 1 (mSIM1)| Length = 765 Score = 30.0 bits (66), Expect = 5.5 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%) Frame = -2 Query: 274 GFNNSRAPLFSQNRALSLSLLPCRLGSTILFVP---VKIISETSGNEVGEAKLDIVGNCI 104 G + +PL + R L LL G + P + ISET+ +G +++++ GN I Sbjct: 65 GHTSRTSPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSI 124 Query: 103 -EYMY------VTQVISARHPVAS 53 EY++ +T V++A P S Sbjct: 125 YEYIHPADHDEMTAVLTAHQPYHS 148
>GLMS_ACIAD (Q6F6U8) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 611 Score = 30.0 bits (66), Expect = 5.5 Identities = 20/53 (37%), Positives = 26/53 (49%) Frame = -1 Query: 551 LATLPIDNLFQGTEEGPLFDLESFQFETEAEGSKLRRDVSAEGNVGVGPSTKG 393 LA LP+ N F EEG + L E A G K+ R V E + V ++KG Sbjct: 193 LALLPVTNRFVYLEEGDIARLTRDSIEIYAHGVKIERPVK-ELDASVSNASKG 244
>GP1BB_MOUSE (P56400) Platelet glycoprotein Ib beta chain precursor (GP-Ib beta)| (GPIbB) (GPIb-beta) (CD42c antigen) Length = 206 Score = 29.6 bits (65), Expect = 7.2 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 57 ATGCLADITCVTYIYSIQFPTMSSLASPTSFP-DVSEIIFTGTNRMVLP 200 A+GC A +C + ++ + P +FP D +E++ TG N LP Sbjct: 23 ASGCPAPCSCAGTLVDCGRRGLTWASLPAAFPPDTTELVLTGNNLTALP 71
>Y1853_PSYAR (Q4FQK7) UPF0145 protein Psyc_1853| Length = 158 Score = 29.3 bits (64), Expect = 9.4 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Frame = -1 Query: 437 VSAEGNVGVGPSTKGLVSMLSGQEEMFAFRRAISRLIEMQTPLYLERVQ--HVHSSGLQQ 264 + A+ VG+ ST S+ G E+F + A+ + Q P+Y Q HS Q Sbjct: 74 LGADAVVGLRFSTS---SIAQGASELFVYGTAVKAVPMQQQPIYQSSNQPPSHHSGHSQY 130 Query: 263 QQGAPVLTKQSTVSQS 216 ++ P + ST +Q+ Sbjct: 131 EEPVPSAAQPSTTAQA 146
>BLM_HUMAN (P54132) Bloom syndrome protein (EC 3.6.1.-) (RecQ protein-like 3)| (DNA helicase, RecQ-like type 2) Length = 1417 Score = 29.3 bits (64), Expect = 9.4 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +1 Query: 271 SPEEWTCWTRSRYNGVCISMSRDIALRNANISS*PDSIDT 390 +P+E C T+ N + SRD AL+ SS PDS+ T Sbjct: 114 TPKEVVCTTQ---NTPTVKKSRDTALKKLEFSSSPDSLST 150
>RABE2_HUMAN (Q9H5N1) Rab GTPase-binding effector protein 2 (Rabaptin-5beta)| Length = 569 Score = 29.3 bits (64), Expect = 9.4 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 11/76 (14%) Frame = +1 Query: 334 RDIALRNANISS*PDSIDTRPLVEGPTPTL-----------PSAETSLLNFDPSASVSNW 480 ++I R + S S + PL P+P L P+AE N D SAS+S++ Sbjct: 178 QEIQRRPRHAPSLHGSTELLPLSRDPSPPLEPLEELSGDGGPAAEAFAHNCDDSASISSF 237 Query: 481 KLSKSKRGPSSVP*NR 528 L SS+P +R Sbjct: 238 SLGGGVGSSSSLPQSR 253 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,329,772 Number of Sequences: 219361 Number of extensions: 1843078 Number of successful extensions: 5045 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4875 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5042 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
