ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19f14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_483366.1| Oryza sativa (japonica cultivar-group), mRNA 311 2e-81
2dbj|AK069912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 311 2e-81
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 198 2e-47
4dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic D... 198 2e-47
5dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic D... 198 2e-47
6gb|AY103766.1| Zea mays PCO100830 mRNA sequence 161 4e-36
7gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete s... 50 0.009
8ref|NM_101598.2| Arabidopsis thaliana mRNA 3'-UTR binding AT1G17... 42 2.3
9emb|CR382340.7| Zebrafish DNA sequence from clone DKEY-151G10 in... 42 2.3
10emb|BX817200.1|CNS0AD35 Arabidopsis thaliana Full-length cDNA Co... 42 2.3
11emb|BX815458.1|CNS0ACZW Arabidopsis thaliana Full-length cDNA Co... 42 2.3
12emb|BX815461.1|CNS0ACRK Arabidopsis thaliana Full-length cDNA Co... 42 2.3
13emb|BX814983.1|CNS0ACXV Arabidopsis thaliana Full-length cDNA Co... 42 2.3
14gb|AY085705.1| Arabidopsis thaliana clone 17210 mRNA, complete s... 42 2.3
15gb|AC007843.6|AC007843 Arabidopsis thaliana chromosome I BAC F28... 42 2.3
16gb|AC022492.5|AC022492 Genomic sequence for Arabidopsis thaliana... 42 2.3
17emb|CR628394.17| Zebrafish DNA sequence from clone DKEY-204A24 i... 42 2.3
18emb|CR735113.6| Zebrafish DNA sequence from clone CH211-232J17 i... 42 2.3
19emb|AL109936.11|HSJ1057J7 Human DNA sequence from clone RP5-1057... 40 9.1
20emb|BX901898.15| Zebrafish DNA sequence from clone DKEY-148E3 in... 40 9.1
21gb|AC108034.2| Homo sapiens BAC clone RP11-137J16 from 4, comple... 40 9.1
22gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 o... 40 9.1
23gb|U20824.1|EHVU20824 Equine herpesvirus 2, complete genome 40 9.1

>ref|XM_483366.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1878

 Score =  311 bits (157), Expect = 2e-81
 Identities = 352/417 (84%)
 Strand = Plus / Minus

                                                                        
Query: 241  ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 300
            ||||||||||||||| ||||| ||||| || | |||||||||||| |||||||| |||||
Sbjct: 1576 ctagttgtagtacataagctgttgcgctgatgactggttcgggtacccgtcgtagagggc 1517

                                                                        
Query: 301  ctgggagccagcagcgagtagccccgcggatacctggcccgcgaggccgtgctggccagc 360
            ||||||||||||||| || ||||| ||||||||||| || || ||||| |||||||||||
Sbjct: 1516 ctgggagccagcagcaagaagccctgcggatacctgacctgcaaggccatgctggccagc 1457

                                                                        
Query: 361  aatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctcggc 420
            ||||||||| |||||| ||||||| ||||  || ||||||||||| || |  |  || ||
Sbjct: 1456 aatctgcccagctgcgacctggcttaaggtaagttgcctctgatatgctacgatatcagc 1397

                                                                        
Query: 421  tgccgtgaagccttgtggcacgccggccattgctactggttgataagaagcaatcggggg 480
            ||||| ||| ||||||||||| || ||||||| ||| |||||||| |||| ||  || ||
Sbjct: 1396 tgccgagaaaccttgtggcacacctgccattggtacgggttgatatgaaggaagtggcgg 1337

                                                                        
Query: 481  cggcagcggcttagaagacgtcccaggcggggttggcttattgccccatgagcacttgat 540
             ||||  ||||| || || || ||||| ||||| || || ||||||||||||||||||||
Sbjct: 1336 tggcaatggcttggaggatgtaccaggtggggtaggtttgttgccccatgagcacttgat 1277

                                                                        
Query: 541  tggcttgccgcgaacgaccaatccgttggccatctgaatagctaatgctgcttcaccatg 600
             ||||| || || || |||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct: 1276 cggcttcccacgcactaccaatccattggccatctgaatagccaatgctgcttcgccatg 1217

                                                                     
Query: 601  ggtactgtaccttataaatccaaaccctttttcctgttgaacacgaacttcctcaat 657
            | ||||||| || | ||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 1216 gttactgtatctcacaaacccaaatcctttatcctgttgaacgcgaacttcctcaat 1160



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>dbj|AK069912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037G11, full
            insert sequence
          Length = 1877

 Score =  311 bits (157), Expect = 2e-81
 Identities = 352/417 (84%)
 Strand = Plus / Minus

                                                                        
Query: 241  ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 300
            ||||||||||||||| ||||| ||||| || | |||||||||||| |||||||| |||||
Sbjct: 1575 ctagttgtagtacataagctgttgcgctgatgactggttcgggtacccgtcgtagagggc 1516

                                                                        
Query: 301  ctgggagccagcagcgagtagccccgcggatacctggcccgcgaggccgtgctggccagc 360
            ||||||||||||||| || ||||| ||||||||||| || || ||||| |||||||||||
Sbjct: 1515 ctgggagccagcagcaagaagccctgcggatacctgacctgcaaggccatgctggccagc 1456

                                                                        
Query: 361  aatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctcggc 420
            ||||||||| |||||| ||||||| ||||  || ||||||||||| || |  |  || ||
Sbjct: 1455 aatctgcccagctgcgacctggcttaaggtaagttgcctctgatatgctacgatatcagc 1396

                                                                        
Query: 421  tgccgtgaagccttgtggcacgccggccattgctactggttgataagaagcaatcggggg 480
            ||||| ||| ||||||||||| || ||||||| ||| |||||||| |||| ||  || ||
Sbjct: 1395 tgccgagaaaccttgtggcacacctgccattggtacgggttgatatgaaggaagtggcgg 1336

                                                                        
Query: 481  cggcagcggcttagaagacgtcccaggcggggttggcttattgccccatgagcacttgat 540
             ||||  ||||| || || || ||||| ||||| || || ||||||||||||||||||||
Sbjct: 1335 tggcaatggcttggaggatgtaccaggtggggtaggtttgttgccccatgagcacttgat 1276

                                                                        
Query: 541  tggcttgccgcgaacgaccaatccgttggccatctgaatagctaatgctgcttcaccatg 600
             ||||| || || || |||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct: 1275 cggcttcccacgcactaccaatccattggccatctgaatagccaatgctgcttcgccatg 1216

                                                                     
Query: 601  ggtactgtaccttataaatccaaaccctttttcctgttgaacacgaacttcctcaat 657
            | ||||||| || | ||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 1215 gttactgtatctcacaaacccaaatcctttatcctgttgaacgcgaacttcctcaat 1159



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  198 bits (100), Expect = 2e-47
 Identities = 247/296 (83%)
 Strand = Plus / Plus

                                                                            
Query: 241      ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 300
                ||||||||||||||| ||||| ||||| || | |||||||||||| |||||||| |||||
Sbjct: 25852113 ctagttgtagtacataagctgttgcgctgatgactggttcgggtacccgtcgtagagggc 25852172

                                                                            
Query: 301      ctgggagccagcagcgagtagccccgcggatacctggcccgcgaggccgtgctggccagc 360
                ||||||||||||||| || ||||| ||||||||||| || || ||||| |||||||||||
Sbjct: 25852173 ctgggagccagcagcaagaagccctgcggatacctgacctgcaaggccatgctggccagc 25852232

                                                                            
Query: 361      aatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctcggc 420
                ||||||||| |||||| ||||||| ||||  || ||||||||||| || |  |  || ||
Sbjct: 25852233 aatctgcccagctgcgacctggcttaaggtaagttgcctctgatatgctacgatatcagc 25852292

                                                                            
Query: 421      tgccgtgaagccttgtggcacgccggccattgctactggttgataagaagcaatcggggg 480
                ||||| ||| ||||||||||| || ||||||| ||| |||||||| |||| ||  || ||
Sbjct: 25852293 tgccgagaaaccttgtggcacacctgccattggtacgggttgatatgaaggaagtggcgg 25852352

                                                                        
Query: 481      cggcagcggcttagaagacgtcccaggcggggttggcttattgccccatgagcact 536
                 ||||  ||||| || || || ||||| ||||| || || ||||||||||||||||
Sbjct: 25852353 tggcaatggcttggaggatgtaccaggtggggtaggtttgttgccccatgagcact 25852408



 Score =  117 bits (59), Expect = 5e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                            
Query: 535      cttgattggcttgccgcgaacgaccaatccgttggccatctgaatagctaatgctgcttc 594
                |||||| ||||| || || || |||||||| ||||||||||||||||| |||||||||||
Sbjct: 25852495 cttgatcggcttcccacgcactaccaatccattggccatctgaatagccaatgctgcttc 25852554

                                                                            
Query: 595      accatgggtactgtaccttataaatccaaaccctttttcctgttgaacacgaacttcctc 654
                 |||||| ||||||| || | ||| ||||| ||||| ||||||||||| |||||||||||
Sbjct: 25852555 gccatggttactgtatctcacaaacccaaatcctttatcctgttgaacgcgaacttcctc 25852614

                   
Query: 655      aat 657
                |||
Sbjct: 25852615 aat 25852617



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>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1003_A09
          Length = 150755

 Score =  198 bits (100), Expect = 2e-47
 Identities = 247/296 (83%)
 Strand = Plus / Plus

                                                                         
Query: 241   ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 300
             ||||||||||||||| ||||| ||||| || | |||||||||||| |||||||| |||||
Sbjct: 37900 ctagttgtagtacataagctgttgcgctgatgactggttcgggtacccgtcgtagagggc 37959

                                                                         
Query: 301   ctgggagccagcagcgagtagccccgcggatacctggcccgcgaggccgtgctggccagc 360
             ||||||||||||||| || ||||| ||||||||||| || || ||||| |||||||||||
Sbjct: 37960 ctgggagccagcagcaagaagccctgcggatacctgacctgcaaggccatgctggccagc 38019

                                                                         
Query: 361   aatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctcggc 420
             ||||||||| |||||| ||||||| ||||  || ||||||||||| || |  |  || ||
Sbjct: 38020 aatctgcccagctgcgacctggcttaaggtaagttgcctctgatatgctacgatatcagc 38079

                                                                         
Query: 421   tgccgtgaagccttgtggcacgccggccattgctactggttgataagaagcaatcggggg 480
             ||||| ||| ||||||||||| || ||||||| ||| |||||||| |||| ||  || ||
Sbjct: 38080 tgccgagaaaccttgtggcacacctgccattggtacgggttgatatgaaggaagtggcgg 38139

                                                                     
Query: 481   cggcagcggcttagaagacgtcccaggcggggttggcttattgccccatgagcact 536
              ||||  ||||| || || || ||||| ||||| || || ||||||||||||||||
Sbjct: 38140 tggcaatggcttggaggatgtaccaggtggggtaggtttgttgccccatgagcact 38195



 Score =  117 bits (59), Expect = 5e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                         
Query: 535   cttgattggcttgccgcgaacgaccaatccgttggccatctgaatagctaatgctgcttc 594
             |||||| ||||| || || || |||||||| ||||||||||||||||| |||||||||||
Sbjct: 38282 cttgatcggcttcccacgcactaccaatccattggccatctgaatagccaatgctgcttc 38341

                                                                         
Query: 595   accatgggtactgtaccttataaatccaaaccctttttcctgttgaacacgaacttcctc 654
              |||||| ||||||| || | ||| ||||| ||||| ||||||||||| |||||||||||
Sbjct: 38342 gccatggttactgtatctcacaaacccaaatcctttatcctgttgaacgcgaacttcctc 38401

                
Query: 655   aat 657
             |||
Sbjct: 38402 aat 38404



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>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0689E12
          Length = 147516

 Score =  198 bits (100), Expect = 2e-47
 Identities = 247/296 (83%)
 Strand = Plus / Plus

                                                                          
Query: 241    ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 300
              ||||||||||||||| ||||| ||||| || | |||||||||||| |||||||| |||||
Sbjct: 124324 ctagttgtagtacataagctgttgcgctgatgactggttcgggtacccgtcgtagagggc 124383

                                                                          
Query: 301    ctgggagccagcagcgagtagccccgcggatacctggcccgcgaggccgtgctggccagc 360
              ||||||||||||||| || ||||| ||||||||||| || || ||||| |||||||||||
Sbjct: 124384 ctgggagccagcagcaagaagccctgcggatacctgacctgcaaggccatgctggccagc 124443

                                                                          
Query: 361    aatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctcggc 420
              ||||||||| |||||| ||||||| ||||  || ||||||||||| || |  |  || ||
Sbjct: 124444 aatctgcccagctgcgacctggcttaaggtaagttgcctctgatatgctacgatatcagc 124503

                                                                          
Query: 421    tgccgtgaagccttgtggcacgccggccattgctactggttgataagaagcaatcggggg 480
              ||||| ||| ||||||||||| || ||||||| ||| |||||||| |||| ||  || ||
Sbjct: 124504 tgccgagaaaccttgtggcacacctgccattggtacgggttgatatgaaggaagtggcgg 124563

                                                                      
Query: 481    cggcagcggcttagaagacgtcccaggcggggttggcttattgccccatgagcact 536
               ||||  ||||| || || || ||||| ||||| || || ||||||||||||||||
Sbjct: 124564 tggcaatggcttggaggatgtaccaggtggggtaggtttgttgccccatgagcact 124619



 Score =  117 bits (59), Expect = 5e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                          
Query: 535    cttgattggcttgccgcgaacgaccaatccgttggccatctgaatagctaatgctgcttc 594
              |||||| ||||| || || || |||||||| ||||||||||||||||| |||||||||||
Sbjct: 124706 cttgatcggcttcccacgcactaccaatccattggccatctgaatagccaatgctgcttc 124765

                                                                          
Query: 595    accatgggtactgtaccttataaatccaaaccctttttcctgttgaacacgaacttcctc 654
               |||||| ||||||| || | ||| ||||| ||||| ||||||||||| |||||||||||
Sbjct: 124766 gccatggttactgtatctcacaaacccaaatcctttatcctgttgaacgcgaacttcctc 124825

                 
Query: 655    aat 657
              |||
Sbjct: 124826 aat 124828



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>gb|AY103766.1| Zea mays PCO100830 mRNA sequence
          Length = 1823

 Score =  161 bits (81), Expect = 4e-36
 Identities = 185/219 (84%), Gaps = 3/219 (1%)
 Strand = Plus / Minus

                                                                        
Query: 241  ctagttgtagtacatgagctgctgcgccgacgtctggttcgggtagccgtcgtacagggc 300
            ||||||||||||||| |||||||| || || | ||||||||||||||| ||||| |||||
Sbjct: 1531 ctagttgtagtacataagctgctgggctgatgactggttcgggtagccatcgtagagggc 1472

                                                                        
Query: 301  ctgggagccagcagcg---agtagccccgcggatacctggcccgcgaggccgtgctggcc 357
            ||| || ||||||||    || || || || || ||||| |||||||| || ||||||||
Sbjct: 1471 ctgagaaccagcagcagcaagaagacctgcagaaacctgacccgcgagaccatgctggcc 1412

                                                                        
Query: 358  agcaatctgcccggctgcggcctggctcaaggccagctgcctctgataagccagaagctc 417
            |||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||
Sbjct: 1411 agcaatctgccctgctgcagcctggcttaaggcaagctgcctctggtaagcaagaagttc 1352

                                                   
Query: 418  ggctgccgtgaagccttgtggcacgccggccattgctac 456
            |||||| ||||| |||||||| || || | |||||||||
Sbjct: 1351 ggctgctgtgaaaccttgtgggacacctgacattgctac 1313



 Score =  121 bits (61), Expect = 3e-24
 Identities = 133/157 (84%)
 Strand = Plus / Minus

                                                                        
Query: 512  gttggcttattgccccatgagcacttgattggcttgccgcgaacgaccaatccgttggcc 571
            |||||||| || |||||||||||||| ||||  || || || || |||||||| ||||||
Sbjct: 1254 gttggcttgtttccccatgagcacttaattgatttcccacggactaccaatccattggcc 1195

                                                                        
Query: 572  atctgaatagctaatgctgcttcaccatgggtactgtaccttataaatccaaaccctttt 631
            ||||||||||||||||||||||| || ||||| || || || |  |||||||||||||| 
Sbjct: 1194 atctgaatagctaatgctgcttccccgtgggtgctatatctcacgaatccaaaccctttg 1135

                                                 
Query: 632  tcctgttgaacacgaacttcctcaatggcaccgaccc 668
            |||||||||||||| | |||||| || || |||||||
Sbjct: 1134 tcctgttgaacacggatttcctcgattgccccgaccc 1098



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>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence
          Length = 105599

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                         
Query: 570   ccatctgaatagctaatgctgcttcaccatgggtactgtaccttataaatccaaaccctt 629
             ||||||| ||||| |  ||||||||||||||||||||||| || | ||| ||||| ||||
Sbjct: 31838 ccatctgtatagcaagagctgcttcaccatgggtactgtatctcacaaacccaaaacctt 31779

              
Query: 630   t 630
             |
Sbjct: 31778 t 31778



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>ref|NM_101598.2| Arabidopsis thaliana mRNA 3'-UTR binding AT1G17370 mRNA, complete cds
          Length = 1772

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 247  gtagtacatgagctgctgcgc 267
            |||||||||||||||||||||
Sbjct: 1466 gtagtacatgagctgctgcgc 1446



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>emb|CR382340.7| Zebrafish DNA sequence from clone DKEY-151G10 in linkage group 23,
             complete sequence
          Length = 158509

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 66    aacagtacagtacagtaatga 86
             |||||||||||||||||||||
Sbjct: 72353 aacagtacagtacagtaatga 72373



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>emb|BX817200.1|CNS0AD35 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH92ZB06 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1554

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 247  gtagtacatgagctgctgcgc 267
            |||||||||||||||||||||
Sbjct: 1337 gtagtacatgagctgctgcgc 1317



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>emb|BX815458.1|CNS0ACZW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS61ZH11 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1488

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 247  gtagtacatgagctgctgcgc 267
            |||||||||||||||||||||
Sbjct: 1371 gtagtacatgagctgctgcgc 1351



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>emb|BX815461.1|CNS0ACRK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS62ZC06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1573

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 247  gtagtacatgagctgctgcgc 267
            |||||||||||||||||||||
Sbjct: 1338 gtagtacatgagctgctgcgc 1318



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>emb|BX814983.1|CNS0ACXV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS21ZG05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1504

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 247  gtagtacatgagctgctgcgc 267
            |||||||||||||||||||||
Sbjct: 1299 gtagtacatgagctgctgcgc 1279



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>gb|AY085705.1| Arabidopsis thaliana clone 17210 mRNA, complete sequence
          Length = 1629

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 247  gtagtacatgagctgctgcgc 267
            |||||||||||||||||||||
Sbjct: 1374 gtagtacatgagctgctgcgc 1354



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>gb|AC007843.6|AC007843 Arabidopsis thaliana chromosome I BAC F28G4 genomic sequence, complete
             sequence
          Length = 84974

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 247   gtagtacatgagctgctgcgc 267
             |||||||||||||||||||||
Sbjct: 63767 gtagtacatgagctgctgcgc 63747



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>gb|AC022492.5|AC022492 Genomic sequence for Arabidopsis thaliana BAC F1L3 from chromosome I,
            complete sequence
          Length = 127968

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 247  gtagtacatgagctgctgcgc 267
            |||||||||||||||||||||
Sbjct: 5590 gtagtacatgagctgctgcgc 5610



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>emb|CR628394.17| Zebrafish DNA sequence from clone DKEY-204A24 in linkage group 19,
             complete sequence
          Length = 242800

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 620   ccaaaccctttttcctgttgaacac 644
             ||||||| |||||||||||||||||
Sbjct: 39525 ccaaaccttttttcctgttgaacac 39549



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>emb|CR735113.6| Zebrafish DNA sequence from clone CH211-232J17 in linkage group 19,
             complete sequence
          Length = 55980

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    tgtcaacagtacagtacagta 82
             |||||||||||||||||||||
Sbjct: 54769 tgtcaacagtacagtacagta 54749



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>emb|AL109936.11|HSJ1057J7 Human DNA sequence from clone RP5-1057J7 on chromosome 1 Contains a
             ribosomal protein L29 (RPL29) pseudogene, the HNRPR gene
             for heterogeneous nuclear ribonucleoprotein R, the ZNF436
             gene for zinc finger protein 436 (KIAA1710, FLJ35045), a
             novel gene (LOC148898), the 3' end of the TCEA3 gene for
             transcription elongation factor A (SII) 3 and a CpG
             island, complete sequence
          Length = 150285

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 624   accctttttcctgttgaaca 643
             ||||||||||||||||||||
Sbjct: 78526 accctttttcctgttgaaca 78507



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>emb|BX901898.15| Zebrafish DNA sequence from clone DKEY-148E3 in linkage group 1, complete
              sequence
          Length = 249378

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 628    tttttcctgttgaacacgaa 647
              ||||||||||||||||||||
Sbjct: 114427 tttttcctgttgaacacgaa 114446



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>gb|AC108034.2| Homo sapiens BAC clone RP11-137J16 from 4, complete sequence
          Length = 164396

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   acaagcaaatgaaaagctct 135
             ||||||||||||||||||||
Sbjct: 11716 acaagcaaatgaaaagctct 11697



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>gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 of the complete
            genome
          Length = 10189

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 440  acgccggccattgctactgg 459
            ||||||||||||||||||||
Sbjct: 8212 acgccggccattgctactgg 8231



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>gb|U20824.1|EHVU20824 Equine herpesvirus 2, complete genome
          Length = 184427

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   cgaggccgtgctggccagca 361
             ||||||||||||||||||||
Sbjct: 18860 cgaggccgtgctggccagca 18841


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,636,044
Number of Sequences: 3902068
Number of extensions: 4636044
Number of successful extensions: 85803
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85733
Number of HSP's gapped (non-prelim): 59
length of query: 668
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 645
effective length of database: 17,143,297,704
effective search space: 11057427019080
effective search space used: 11057427019080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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