ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FABG_BUCAP (Q8K9J5) 3-oxoacyl-[acyl-carrier-protein] reductase (... 33 0.60
2NMT1_ARATH (Q9LTR9) Glycylpeptide N-tetradecanoyltransferase 1 (... 32 1.3
3TOLB_ERWCT (Q6D7F2) Protein tolB precursor 30 3.0
4IBP5_XENLA (Q90WV8) Insulin-like growth factor-binding protein 5... 30 5.0
5ZN580_MOUSE (Q9DB38) Zinc finger protein 580 29 8.6

>FABG_BUCAP (Q8K9J5) 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)|
           (3-ketoacyl-acyl carrier protein reductase)
          Length = 244

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +3

Query: 15  TVPXLIGFLNPRLFTEKTGNNSGLIVQHKPRACSVVCKGSDLR----GFGMQ*YTKKLVT 182
           T+  +IG+L  R     + + SGLI  HK  A  V  KG  +     GF     TK L  
Sbjct: 135 TIGSVIGYLGNRGQINYSASKSGLIGFHKSLALEVAQKGITVNIVSPGFIKTNLTKNL-- 192

Query: 183 RQKFGLEKYTSKAPFKR 233
              F  +K+ SK P KR
Sbjct: 193 -NVFQYKKHLSKIPMKR 208



to top

>NMT1_ARATH (Q9LTR9) Glycylpeptide N-tetradecanoyltransferase 1 (EC 2.3.1.97)|
           (Peptide N-myristoyltransferase 1)
           (Myristoyl-CoA:protein N-myristoyltransferase 1) (NMT 1)
           (Type I N-myristoyltransferase 1)
          Length = 434

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -1

Query: 304 SDFEANPIVDGQWLLPCAVDIDSFLLKGALLVYFSKPNFCLVTNFLVYYCIPNPRRSEPL 125
           +DF+ N +    WLLP    +DS+L++         P    VT+F  +Y +P+     P 
Sbjct: 300 TDFDENDVE--HWLLPREDVVDSYLVES--------PETHDVTDFCSFYTLPSTILGNPN 349

Query: 124 QTTLHA 107
            TTL A
Sbjct: 350 YTTLKA 355



to top

>TOLB_ERWCT (Q6D7F2) Protein tolB precursor|
          Length = 430

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 163 TPKNWSLDRSLA*KNTQARHLSRGSYLYPLRMVTTTGHPRSGLLQNQTKI 312
           TP  W+     A    Q +  + GSYL   ++V T+G+P + L QNQ K+
Sbjct: 87  TPAAWTALGIDAVVVGQVQPSADGSYLVSYQLVDTSGNPGNVLAQNQFKV 136



to top

>IBP5_XENLA (Q90WV8) Insulin-like growth factor-binding protein 5 precursor|
           (IGFBP-5) (IBP-5) (IGF-binding protein 5) (xIGFBP-5)
          Length = 265

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 157 CIPNPRRSEPLQTTLHARGLCCTIK 83
           C+P     +PL   LH RG+C  +K
Sbjct: 81  CLPEQGEEKPLHALLHGRGVCLNLK 105



to top

>ZN580_MOUSE (Q9DB38) Zinc finger protein 580|
          Length = 172

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 301 QTKINPGEPQTLTGYRSPSCSRVLIS 378
           Q +  PGEP    GY  P C+RV  S
Sbjct: 78  QREATPGEPGPRKGYSCPECARVFAS 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,572,846
Number of Sequences: 219361
Number of extensions: 1677678
Number of successful extensions: 3460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3460
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top