ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 5e-16
2dbj|AK061862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
3gb|AY104784.1| Zea mays PCO129009 mRNA sequence 76 1e-10
4gb|BT019120.1| Zea mays clone Contig732.F mRNA sequence 72 2e-09
5gb|AY109148.1| Zea mays PCO129008 mRNA sequence 72 2e-09
6gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
11emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb... 68 3e-08
12gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome... 42 1.8
13gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N... 42 1.8
14gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6... 42 1.8
15gb|AF327412.1| Mus musculus H19 gene, upstream enhancer sequence 42 1.8
16gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, comple... 42 1.8
17emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 ... 42 1.8
18gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, co... 42 1.8
19dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B18... 42 1.8
20gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome ... 40 6.9
21gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, co... 40 6.9
22gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 6.9
23emb|AL049569.13|HSDJ37C10 Human DNA sequence from clone RP1-37C1... 40 6.9
24gb|AC011375.5| Homo sapiens chromosome 5 clone CTB-119L1, comple... 40 6.9
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
26gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 6.9
27dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
28dbj|D00488.1|D00488S1 Potato virus Y genomic RNA, 5' end of the ... 40 6.9
29gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 6.9
30gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosom... 40 6.9
31gb|M96425.1|PMVCG Pepper mottle virus complete genome 40 6.9 
>dbj|AK103742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138L11, full
            insert sequence
          Length = 1354

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 158/195 (81%)
 Strand = Plus / Minus

                                                                        
Query: 319  ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 378
            ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1027 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 968

                                                                        
Query: 379  agatgataagcagcactacacccacaaaaactccttccaggagagtagattttaattggc 438
            ||||||| ||||||||||  || |||||   ||||||||| ||||| ||||||| |  ||
Sbjct: 967  agatgatcagcagcactattccaacaaagcttccttccagcagagttgattttactaagc 908

                                                                        
Query: 439  actctccatcgcatttctctaggacaggtttagttgcgttggtcttctctgcaagatacc 498
            |||| || || |||||  |  || |||||||||| |  |||||||||||||| || ||||
Sbjct: 907  actccccgtcacattttccacggccaggtttagtagtattggtcttctctgcgaggtacc 848

                           
Query: 499  tggctaatggcaggt 513
            || ||||||| ||||
Sbjct: 847  tgcctaatggtaggt 833
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>dbj|AK061862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G12, full
            insert sequence
          Length = 1371

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 156/195 (80%)
 Strand = Plus / Minus

                                                                        
Query: 319  ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 378
            ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1042 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 983

                                                                        
Query: 379  agatgataagcagcactacacccacaaaaactccttccaggagagtagattttaattggc 438
            ||||||| ||||||||||  || |||||   |||||| || ||||| ||||||| |  ||
Sbjct: 982  agatgattagcagcactattccaacaaagcttccttctagcagagttgattttactaagc 923

                                                                        
Query: 439  actctccatcgcatttctctaggacaggtttagttgcgttggtcttctctgcaagatacc 498
            |||| ||||| |||||  |  || | |||||||| |  || ||||||||||| || ||||
Sbjct: 922  actccccatcacattttccacggccgggtttagtagtattagtcttctctgcgaggtacc 863

                           
Query: 499  tggctaatggcaggt 513
            || |||| |||||||
Sbjct: 862  tgcctaacggcaggt 848
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>gb|AY104784.1| Zea mays PCO129009 mRNA sequence
          Length = 1520

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                        
Query: 315  tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 374
            ||||||||||| |||||||| || || |||||||| |||||||||||   ||||||||||
Sbjct: 1083 tcctggggagcttcaaacctcgagggagtatcgatgcccatcatgcacatgagtcctgat 1024

                                  
Query: 375  atcaagatgataagcagcacta 396
            |||| |||||| || |||||||
Sbjct: 1023 atcaggatgatgagaagcacta 1002
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>gb|BT019120.1| Zea mays clone Contig732.F mRNA sequence
          Length = 436

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 114/140 (81%)
 Strand = Plus / Minus

                                                                       
Query: 315 tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 374
           ||||||||||| |||||| | || || |||||||| |||||||| ||   ||| ||||||
Sbjct: 148 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 89

                                                                       
Query: 375 atcaagatgataagcagcactacacccacaaaaactccttccaggagagtagattttaat 434
           |||||||||||||| |||||||  || |||||   |||||| || ||||| ||||| | |
Sbjct: 88  atcaagatgataaggagcactattccgacaaaggttccttcaagaagagttgatttgact 29

                               
Query: 435 tggcactctccatcgcattt 454
            |||||||||| || |||||
Sbjct: 28  aggcactctccgtcacattt 9
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>gb|AY109148.1| Zea mays PCO129008 mRNA sequence
          Length = 1389

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 114/140 (81%)
 Strand = Plus / Minus

                                                                        
Query: 315  tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 374
            ||||||||||| |||||| | || || |||||||| |||||||| ||   ||| ||||||
Sbjct: 1084 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 1025

                                                                        
Query: 375  atcaagatgataagcagcactacacccacaaaaactccttccaggagagtagattttaat 434
            |||||||||||||| |||||||  || |||||   |||||| || ||||| ||||| | |
Sbjct: 1024 atcaagatgataaggagcactattccgacaaaggttccttcaagaagagttgatttgact 965

                                
Query: 435  tggcactctccatcgcattt 454
             |||||||||| || |||||
Sbjct: 964  aggcactctccgtcacattt 945
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>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15,
              complete sequence
          Length = 147941

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                          
Query: 319    ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 378
              ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 114514 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 114455

                                
Query: 379    agatgataagcagcacta 396
              ||||||| ||||||||||
Sbjct: 114454 agatgatcagcagcacta 114437



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 84/104 (80%)
 Strand = Plus / Minus

                                                                          
Query: 410    tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 469
              ||||||||| ||||| ||||||| |  |||||| || || |||||  |  || |||||||
Sbjct: 114190 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 114131

                                                          
Query: 470    agttgcgttggtcttctctgcaagatacctggctaatggcaggt 513
              ||| |  |||||||||||||| || |||||| ||||||| ||||
Sbjct: 114130 agtagtattggtcttctctgcgaggtacctgcctaatggtaggt 114087
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 319     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 378
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019

                                 
Query: 379     agatgataagcagcacta 396
               ||||||| ||||||||||
Sbjct: 1151020 agatgattagcagcacta 1151037
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 319     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 378
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1276101 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1276160

                                 
Query: 379     agatgataagcagcacta 396
               ||||||| ||||||||||
Sbjct: 1276161 agatgatcagcagcacta 1276178



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 84/104 (80%)
 Strand = Plus / Plus

                                                                           
Query: 410     tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 469
               ||||||||| ||||| ||||||| |  |||||| || || |||||  |  || |||||||
Sbjct: 1276425 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 1276484

                                                           
Query: 470     agttgcgttggtcttctctgcaagatacctggctaatggcaggt 513
               ||| |  |||||||||||||| || |||||| ||||||| ||||
Sbjct: 1276485 agtagtattggtcttctctgcgaggtacctgcctaatggtaggt 1276528
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 319     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 378
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1273822 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1273881

                                 
Query: 379     agatgataagcagcacta 396
               ||||||| ||||||||||
Sbjct: 1273882 agatgatcagcagcacta 1273899



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 84/104 (80%)
 Strand = Plus / Plus

                                                                           
Query: 410     tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 469
               ||||||||| ||||| ||||||| |  |||||| || || |||||  |  || |||||||
Sbjct: 1274146 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 1274205

                                                           
Query: 470     agttgcgttggtcttctctgcaagatacctggctaatggcaggt 513
               ||| |  |||||||||||||| || |||||| ||||||| ||||
Sbjct: 1274206 agtagtattggtcttctctgcgaggtacctgcctaatggtaggt 1274249
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 319     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 378
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019

                                 
Query: 379     agatgataagcagcacta 396
               ||||||| ||||||||||
Sbjct: 1151020 agatgattagcagcacta 1151037
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>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                         
Query: 319   ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 378
             ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 89943 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 90002

                               
Query: 379   agatgataagcagcacta 396
             ||||||| ||||||||||
Sbjct: 90003 agatgattagcagcacta 90020
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>gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome 17, complete sequence
          Length = 184952

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 386   aagcagcactacacccacaaa 406
             |||||||||||||||||||||
Sbjct: 78885 aagcagcactacacccacaaa 78905
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>gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N1, from chromosome 17,
              complete sequence
          Length = 254336

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 386    aagcagcactacacccacaaa 406
              |||||||||||||||||||||
Sbjct: 248536 aagcagcactacacccacaaa 248516
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>gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6, complete sequence
          Length = 197070

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 386   aagcagcactacacccacaaa 406
             |||||||||||||||||||||
Sbjct: 16848 aagcagcactacacccacaaa 16828
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>gb|AF327412.1| Mus musculus H19 gene, upstream enhancer sequence
          Length = 7708

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 218  ggcacctttcaagaggaagct 238
            |||||||||||||||||||||
Sbjct: 4759 ggcacctttcaagaggaagct 4779
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>gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, complete sequence
          Length = 165929

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 476   gttggtcttctctgcaagata 496
             |||||||||||||||||||||
Sbjct: 99564 gttggtcttctctgcaagata 99584
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>emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 on chromosome 7, complete
              sequence
          Length = 169471

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 218    ggcacctttcaagaggaagct 238
              |||||||||||||||||||||
Sbjct: 127172 ggcacctttcaagaggaagct 127192
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>gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, complete sequence
          Length = 220084

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 218    ggcacctttcaagaggaagct 238
              |||||||||||||||||||||
Sbjct: 130358 ggcacctttcaagaggaagct 130378
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>dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B189M11, complete sequences
          Length = 105288

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 218    ggcacctttcaagaggaagct 238
              |||||||||||||||||||||
Sbjct: 100473 ggcacctttcaagaggaagct 100493
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>gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome 12, complete sequence
          Length = 226392

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    aaaatacacaagcaaggcac 222
              ||||||||||||||||||||
Sbjct: 137595 aaaatacacaagcaaggcac 137614
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>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence
          Length = 220191

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   caagaggaagctatctatat 246
             ||||||||||||||||||||
Sbjct: 94685 caagaggaagctatctatat 94666
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 49      ggctattcacagagaaaact 68
               ||||||||||||||||||||
Sbjct: 3169737 ggctattcacagagaaaact 3169718
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>emb|AL049569.13|HSDJ37C10 Human DNA sequence from clone RP1-37C10 on chromosome 1p35.2-35.21
              Contains the 3' end of the CROCC gene for ciliary rootlet
              coiled-coil rootletin (KIAA0445), the MFAP2 gene for
              microfibrillar-associated protein 2, a novel gene, the gene
              for a novel protein, the SDHB gene for succinate
              dehydrogenase complex subunit B iron sulfur (Ip), the PADI2
              gene for type II peptidyl arginine deiminase, complete
              sequence
          Length = 216497

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    atccccatcatgcagcagag 367
              ||||||||||||||||||||
Sbjct: 154639 atccccatcatgcagcagag 154620
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>gb|AC011375.5| Homo sapiens chromosome 5 clone CTB-119L1, complete sequence
          Length = 107044

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    acagagaaaactggaaacaa 76
             ||||||||||||||||||||
Sbjct: 30314 acagagaaaactggaaacaa 30333
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 187      agaagtttggcttagaaaaa 206
                ||||||||||||||||||||
Sbjct: 33106724 agaagtttggcttagaaaaa 33106743
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>gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone rp23-221i11, complete
             sequence
          Length = 186063

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   gaggaagctatctatatcca 249
             ||||||||||||||||||||
Sbjct: 11543 gaggaagctatctatatcca 11562
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>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1369_G08
          Length = 104190

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   agaagtttggcttagaaaaa 206
             ||||||||||||||||||||
Sbjct: 22384 agaagtttggcttagaaaaa 22403
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>dbj|D00488.1|D00488S1 Potato virus Y genomic RNA, 5' end of the RNA genome
          Length = 173

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 59  agagaaaactggaaacaatt 78
           ||||||||||||||||||||
Sbjct: 148 agagaaaactggaaacaatt 129
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>gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone rp23-222i2, complete
             sequence
          Length = 185413

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   gaggaagctatctatatcca 249
             ||||||||||||||||||||
Sbjct: 22631 gaggaagctatctatatcca 22612
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>gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosome 8, complete sequence
          Length = 221596

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   caagaggaagctatctatat 246
             ||||||||||||||||||||
Sbjct: 35728 caagaggaagctatctatat 35709
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>gb|M96425.1|PMVCG Pepper mottle virus complete genome
          Length = 9640

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 59  agagaaaactggaaacaatt 78
           ||||||||||||||||||||
Sbjct: 148 agagaaaactggaaacaatt 129


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,780,057
Number of Sequences: 3902068
Number of extensions: 4780057
Number of successful extensions: 87606
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87409
Number of HSP's gapped (non-prelim): 195
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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