>DBP9_GIBZE (Q4IJ56) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-)|
          Length = 615

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
 Frame = -2

Query: 605 VESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXXXXXXXXXXLTN 426
           V+  RYR  D  R+VT   I+EAR ++++ E+L SEKLK +FEENPT          L  
Sbjct: 490 VDPFRYRMNDALRAVTKVAIREARTRELRQELLKSEKLKRYFEENPTELSHLRHDGELRT 549

Query: 425 KSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGR-KKRMGFRSGSGKSSDPLRT 249
               AHL+ +PEYL+    K+A     +   AM  D  G+ KK  GF+ GS K  DPL+T
Sbjct: 550 ARQQAHLKHIPEYLMPKDGKQALTE-DVGFVAMRKDKKGKGKKGRGFKVGSRK-RDPLKT 607

Query: 248 FSAEGKS 228
           F A  K+
Sbjct: 608 FKARRKT 614

>DBP9_CRYNE (Q5K7L2) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-)|
          Length = 627

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
 Frame = -2

Query: 614 KNAVESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXXXXXXXXXX 435
           K  +E  RYR +D  ++VT + + EARR++V+ E+LNSEKLK+HF  NP           
Sbjct: 500 KGEIEGFRYRMEDALKAVTGKRVAEARREEVRRELLNSEKLKSHFAANPLDLSYLRHDAP 559

Query: 434 LTNKSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGR-----KKRMGFRSGSGK 270
           L       HL+ VP YL+       +       A +G    GR     +   G +SG GK
Sbjct: 560 LHPARQQTHLKHVPNYLMPKIAALPTGGDVTDHAGVGFSRRGRGGHRGRGGRGSKSGRGK 619

Query: 269 SSDPLR 252
             DPL+
Sbjct: 620 KVDPLK 625

>DDX56_HUMAN (Q9NY93) Probable ATP-dependent RNA helicase DDX56 (EC 3.6.1.-)|
           (DEAD box protein 56) (ATP-dependent 61 kDa nucleolar
           RNA helicase) (DEAD-box protein 21)
          Length = 547

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
 Frame = -2

Query: 638 ILPFPLLTKNAVESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXX 459
           +LP+    +  +E  RYR +D  RSVT + I+EAR +++K E+L+SEKLK +FE+NP   
Sbjct: 413 LLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDL 471

Query: 458 XXXXXXXXLTNKSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGRKKR----MG 291
                   L    +  HL  VP+YL+ P             A  GL  P +K++      
Sbjct: 472 QLLRHDLPLHPAVVKPHLGHVPDYLVPP-------------ALRGLVRPHKKRKKLSSSC 518

Query: 290 FRSGSGKSSDPLRTFSAEGK 231
            ++   KS +PLR+F  +GK
Sbjct: 519 RKAKRAKSQNPLRSFKHKGK 538

>DBP9_DEBHA (Q6BLM5) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-)|
          Length = 586

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
 Frame = -2

Query: 680 EHMLQDVEKKDTNC---ILPFPLLTKNAVESLRYRAQDVARSVTSRDIQEARRQDVKNEI 510
           E +L+ + ++ +N    I P+    K  VE  RYRA+D  R+VT   ++EAR +++KNE+
Sbjct: 442 EKVLRRIVRQQSNNGFEIKPYQFDMKQ-VEGFRYRAEDAFRAVTQSAVREARIKELKNEL 500

Query: 509 LNSEKLKAHFEENPTXXXXXXXXXXLTNKSIPAHLRDVPEYLIDPTTKEASNAVKLSRAA 330
           +NS+KLK  FEENP           L    +  HL+ VPEYL+  + +     +      
Sbjct: 501 VNSDKLKRFFEENPQDLASLRHDKELHPTRVQTHLKRVPEYLLPESARADHKKIGFVPFH 560

Query: 329 MGLDNPGRKKRMGFRSGSGKSSDPLRTF 246
               +  RK     R  SG+  DPL++F
Sbjct: 561 KNKVHKNRK-----RKPSGRKPDPLKSF 583

>DDX56_MOUSE (Q9D0R4) Probable ATP-dependent RNA helicase DDX56 (EC 3.6.1.-)|
           (DEAD box protein 56) (ATP-dependent 61 kDa nucleolar
           RNA helicase)
          Length = 546

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
 Frame = -2

Query: 638 ILPFPLLTKNAVESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXX 459
           +LP+    +  +ES RYR +D  RSVT + I+EAR +++K E+L+SEKLK +FE+NP   
Sbjct: 413 LLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDL 471

Query: 458 XXXXXXXXLTNKSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGRKKR---MGF 288
                   L    +  HL  VP+YL+               A  GL +P +K+R      
Sbjct: 472 QLLRHDLPLHPAVVKPHLGHVPDYLV-------------PAALRGLVHPRKKRRKVPFSR 518

Query: 287 RSGSGKSSDPLRTFSAEGK 231
           ++   K+ +PLR F   GK
Sbjct: 519 KAKKVKAQNPLRDFKHRGK 537

>DBP9_EMENI (Q5AZA6) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)|
          Length = 610

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
 Frame = -2

Query: 605 VESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXXXXXXXXXXLTN 426
           V++ RYR  D  R++T   IQEAR ++++ E++ SEKLK HFEENP           L  
Sbjct: 480 VDAFRYRMSDALRAITRLAIQEARAREIRQELVKSEKLKRHFEENPEELRQLRHDGELRA 539

Query: 425 KSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNP------GRKKRMGFRSGSGKSS 264
             I  HL+ +PEYL+    K+  +   +   ++    P       R +  G     G+  
Sbjct: 540 ARIQPHLKHIPEYLMPAKGKKGISNEDVGFVSLRKTGPENRIRKARDRNRGRGKKPGRKI 599

Query: 263 DPLRTFS 243
           DPL+TF+
Sbjct: 600 DPLKTFN 606

>DBP9_ASPOR (Q2UFL0) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)|
          Length = 605

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
 Frame = -2

Query: 605 VESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXXXXXXXXXXLTN 426
           VE+ RYR  D  R+VT   +QEAR ++++ E++ SEKLK HFEENP           L +
Sbjct: 471 VEAFRYRMTDALRAVTRLAVQEARAREIRQELIKSEKLKRHFEENPEELRQLRHDDELRS 530

Query: 425 KSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGRKKRMGFR----------SGS 276
             +  HL+ +PEYL+    K+  ++  +   +    N  R ++   +          +G 
Sbjct: 531 ARVQPHLKHIPEYLMPAKGKKGLSSGDVGFVSFRKQNENRIRKAREKNRGKGNGRKFAGV 590

Query: 275 GKSSDPLRTFS 243
            K  DPL+TF+
Sbjct: 591 KKKVDPLKTFN 601

>DBP9_ASHGO (Q74ZC1) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-)|
          Length = 595

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
 Frame = -2

Query: 605 VESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXXXXXXXXXXLTN 426
           +E  RYR +D  R+VT   ++EAR +++K E+L SEKLK HFEENP           L  
Sbjct: 478 IEGFRYRMEDGFRAVTQVAVREARVKELKQELLASEKLKRHFEENPHDLDSLRHDKELHP 537

Query: 425 KSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGRKKRMG--FRSGSGKSSDPLR 252
             +  HL+ VP+YL+    +E    +      +   NP +K R G   +   G+ SDPL+
Sbjct: 538 ARVQQHLKRVPDYLLPEAARETGKKI----GFVPFHNP-KKNRKGKVAKRKPGRKSDPLK 592

Query: 251 TF 246
            F
Sbjct: 593 NF 594

>DBP9_CANAL (Q5A4P9) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-)|
          Length = 574

 Score = 70.9 bits (172), Expect = 4e-12
 Identities = 47/120 (39%), Positives = 63/120 (52%)
 Frame = -2

Query: 605 VESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXXXXXXXXXXLTN 426
           VE  RYRA D  R+VT   ++EAR +++KNE++NSEKLK  FEENP           L  
Sbjct: 457 VEGFRYRADDAFRAVTQTAVREARVKELKNELINSEKLKRFFEENPQDLASLRHDKELHP 516

Query: 425 KSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGRKKRMGFRSGSGKSSDPLRTF 246
             I + L++VP+YL+    + A   VK         N   K R G   G  K  DPL++F
Sbjct: 517 ARIQSQLKNVPQYLL---PESARQDVKNIGFVPFHKNKIHKHRKGKGKGR-KKVDPLKSF 572

>DBP9_ASPFU (Q4X0C2) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)|
          Length = 649

 Score = 69.7 bits (169), Expect = 8e-12
 Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 13/159 (8%)
 Frame = -2

Query: 680 EHMLQDVEKKDTNC---ILPFPLLTKNAVESLRYRAQDVARSVTSRDIQEARRQDVKNEI 510
           E +L  + KK       + P+    K  V++ RYR  D  R+VT   IQEAR ++++ E+
Sbjct: 489 ESVLAKIVKKQAKLGHEVKPYHFEMKQ-VDAFRYRMTDALRAVTRLAIQEARAREIRQEL 547

Query: 509 LNSEKLKAHFEENPTXXXXXXXXXXLTNKSIPAHLRDVPEYLIDPTTKE--ASNAVKLSR 336
           + SEKLK HFEENP           L    I  HL+ +P+YL+    ++  +S  V    
Sbjct: 548 VKSEKLKRHFEENPEELKQLRHDGELRAARIQPHLKHIPDYLMPSKGRKGISSEDVGFVG 607

Query: 335 AAMGLDNPGRKKRMGFRSGSGKSS--------DPLRTFS 243
                DN  RK R   R G GK          DPL+TF+
Sbjct: 608 FRKSGDNRIRKAREKNR-GKGKGRKPSGVRKVDPLKTFN 645

>DBP9_YEAST (Q06218) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-) (DEAD box|
           protein 9)
          Length = 594

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 44/120 (36%), Positives = 61/120 (50%)
 Frame = -2

Query: 605 VESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXXXXXXXXXXLTN 426
           VE+ RYR +D  R+VT   I+EAR +++K E+L SEKLK HFEENP           L  
Sbjct: 475 VEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHP 534

Query: 425 KSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGRKKRMGFRSGSGKSSDPLRTF 246
             +  HL+ VP+YL+  + +     VK             KK    +  +GK  DPL+ F
Sbjct: 535 ARVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPKNGK-VDPLKNF 593

>DBP9_KLULA (Q6CUI6) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-)|
          Length = 594

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
 Frame = -2

Query: 605 VESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXXXXXXXXXXLTN 426
           VE  RYR +D  R+VT   I+EAR +++K E+L SEKLK HFEENP           L  
Sbjct: 473 VEGFRYRMEDGFRAVTQVAIREARIKELKQELLASEKLKRHFEENPHDLESLRHDKELHP 532

Query: 425 KSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGRKKRMGFRSGSGK---SSDPL 255
             +  HL+ VP+YL+  T ++ +   K+       ++  +  R+  + G+ +    SDPL
Sbjct: 533 ARVQQHLKRVPDYLLPETARKDNK--KIGFVPFHKNSHRKNGRVVKKKGNVQRKGKSDPL 590

Query: 254 RTF 246
           ++F
Sbjct: 591 KSF 593

>DBP9_SCHPO (O60080) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)|
          Length = 595

 Score = 66.2 bits (160), Expect = 9e-11
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
 Frame = -2

Query: 680 EHMLQDVEKKDTNCILPFPLLTKNAVESLRYRAQDVARSVTSRDIQEARRQDVKNEILNS 501
           E +L+ +EKK  + + P+    KN +++ RYR +D  R+VT+  +  AR  ++K E+L S
Sbjct: 451 ESVLRRLEKKQIS-LQPYSF-DKNQIDAFRYRMEDALRAVTTVAVSAARAAELKQELLIS 508

Query: 500 EKLKAHFEENPTXXXXXXXXXXLTNK--SIPAHLRDVPEYLIDPTTKEASNAVKLSRAAM 327
           EKLK++F ENP            + +      HLR VPEYL+     +   AV      +
Sbjct: 509 EKLKSYFAENPDELLSLTHDTVSSVRLGHTQRHLRHVPEYLL----PKGMQAVNKDIGFV 564

Query: 326 GLDNPGRKKRMGFRSGSGKSSDPLRT 249
                 R+K    R       DPLR+
Sbjct: 565 PFKKNNRRKVFKSRKNPKHRHDPLRS 590

>DBP9_YARLI (Q6BZR4) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-)|
          Length = 544

 Score = 66.2 bits (160), Expect = 9e-11
 Identities = 31/75 (41%), Positives = 46/75 (61%)
 Frame = -2

Query: 605 VESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXXXXXXXXXXLTN 426
           VE  RYR  D  R+VT+  ++EAR +++K E+LNSE+L  HF+ENP           L  
Sbjct: 429 VEGFRYRMDDAFRAVTTVGVREARVKEIKTELLNSERLARHFDENPDDLKALRHDKELHT 488

Query: 425 KSIPAHLRDVPEYLI 381
             + AH++ VP+YL+
Sbjct: 489 SKVQAHMKRVPDYLL 503

>DBP9_CANGA (Q6FUA6) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-)|
          Length = 595

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
 Frame = -2

Query: 605 VESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTXXXXXXXXXXLTN 426
           VE  RYR +D  R+VT   ++EAR +++K E+L SEKLK HFEENP           L  
Sbjct: 476 VEGFRYRMEDGFRAVTQVAVREARIKELKEELLASEKLKRHFEENPIELKSLRHDKELHP 535

Query: 425 KSIPAHLRDVPEYLIDPTTKEASNAV------KLSRAAMGLDNPGRKKRMGFRSGSGK 270
             +  HL+ +PEYL+    +     +      K ++      N   KKR G ++ + K
Sbjct: 536 ARVQNHLKRIPEYLLPENARTDKKKISFIPFHKPNKVGKKSKNSKNKKRKGGKTDALK 593

>DBP9_USTMA (Q4P7M1) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-)|
          Length = 686

 Score = 64.7 bits (156), Expect = 3e-10
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 22/145 (15%)
 Frame = -2

Query: 611 NAVESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENP-TXXXXXXXXXX 435
           ++V    YR  D  +S+T   I+EAR +++KNEIL S KL++HFE++P            
Sbjct: 540 SSVAGFHYRVTDTLKSITKALIREARIKELKNEILTSSKLQSHFEDHPDDLAFLQHDKAL 599

Query: 434 LTNKSIPAHLRDVPEYL----IDPTTKEASNA----------VKLSRAAMGLDNPGRKKR 297
           LT+++  +HL+ VP+YL    I+P  K   ++           K+   A    N G K+R
Sbjct: 600 LTSRAQQSHLKHVPQYLVPKIINPGAKLTKSSGSEYKGYVPKNKIKDGANDRKNKGGKRR 659

Query: 296 -------MGFRSGSGKSSDPLRTFS 243
                   G    S K  DPLR FS
Sbjct: 660 SSTGKNTTGAAGKSRKKVDPLRKFS 684

>DBP9_NEUCR (Q7S6F3) ATP-dependent RNA helicase dbp-9 (EC 3.6.1.-)|
          Length = 676

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
 Frame = -2

Query: 614 KNAVESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENP-TXXXXXXXXX 438
           K+ +E+ RYR  D  R+VT   I+EAR ++++ E+L SE LK +FEENP           
Sbjct: 537 KDQMEAFRYRMNDALRAVTKVAIREARTRELRQELLRSETLKRYFEENPHELSHLRHDGE 596

Query: 437 XLTNKSIPAHLRDVPEYLIDPTTKEASNA-----VKLSRAAMGLDNPGRKKRMGFRSGSG 273
             T     AHL+ VP+YL+    K A        V   +        G+K   G + G G
Sbjct: 597 LGTKMRQQAHLKHVPDYLLPQDGKNALTETQIGFVPFKKQGDDKKTRGKKGAKGGKGGHG 656

Query: 272 K 270
           K
Sbjct: 657 K 657

>YCF2_PINTH (P41653) Protein ycf2|
          Length = 2054

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
 Frame = -2

Query: 626 PLLTKNAVE--SLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFE-ENPT 465
           P  TK  +E  +L  R   + ++V S+D+++++   + N I++  K+K +FE ENP+
Sbjct: 308 PSATKKPIEDFNLSKRLFKIKKNVFSQDLRDSKSYSLMNRIVDLWKIKTYFEIENPS 364

>SYA_THEAC (Q9HJW4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 871

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 620 LTKNAVESLRYRAQDVARSVTS--RDIQEARRQDVKNEILNSEKLKAHFEENP 468
           L K  +E +     ++++      R + EARR+D++N I N++K+     E P
Sbjct: 748 LLKKPIEEIAQSVSELSKGYADLRRSLAEARRRDIENRIANAKKIGTPGAEYP 800


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,789,985
Number of Sequences: 219361
Number of extensions: 1532929
Number of successful extensions: 4035
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4020
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)