| Clone Name | rbags19f06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ310847.1|HVU310847 Hordeum vulgare partial CA8 gene for P-type ATPase Length = 1800 Score = 777 bits (392), Expect = 0.0 Identities = 392/392 (100%) Strand = Plus / Minus Query: 186 tcacaccacctcgatgtgcttcacaccgtcgtcttccttcgcatcaccagcctctttctt 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1800 tcacaccacctcgatgtgcttcacaccgtcgtcttccttcgcatcaccagcctctttctt 1741 Query: 246 ggctgggcagcagcaagagaacatatctaacaacggacggtctgcaacagggataagctt 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1740 ggctgggcagcagcaagagaacatatctaacaacggacggtctgcaacagggataagctt 1681 Query: 306 tcccacgagtgctaacggccagctgataaaagcaagacctatggacaccaaccacagctg 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1680 tcccacgagtgctaacggccagctgataaaagcaagacctatggacaccaaccacagctg 1621 Query: 366 ccagctcaatctgactgttgtcgtgaacttaccaagaaactcgatgataagcacctggag 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1620 ccagctcaatctgactgttgtcgtgaacttaccaagaaactcgatgataagcacctggag 1561 Query: 426 cacaaccgttatggctataatggcaatgaagaggcggttccctgcaatacccttgaaaat 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1560 cacaaccgttatggctataatggcaatgaagaggcggttccctgcaatacccttgaaaat 1501 Query: 486 attcagctcatctggtttccgagcgttgaactcactgaacacttgacagagaacaaatgt 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1500 attcagctcatctggtttccgagcgttgaactcactgaacacttgacagagaacaaatgt 1441 Query: 546 gttgaatatgaaggtatttttcagcatttcag 577 |||||||||||||||||||||||||||||||| Sbjct: 1440 gttgaatatgaaggtatttttcagcatttcag 1409
>ref|XM_473800.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3267 Score = 180 bits (91), Expect = 3e-42 Identities = 229/275 (83%) Strand = Plus / Minus Query: 292 acagggataagctttcccacgagtgctaacggccagctgataaaagcaagacctatggac 351 |||||||||||||||||||| | ||| ||||||||||| | ||| || |||||||| ||| Sbjct: 3167 acagggataagctttcccacaaatgccaacggccagctaaaaaaggcgagacctattgac 3108 Query: 352 accaaccacagctgccagctcaatctgactgttgtcgtgaacttaccaagaaactcgatg 411 |||||||||| ||||||| | | |||| ||| | || ||||| ||||| ||||| | Sbjct: 3107 accaaccacaactgccaggtgagtctggttgtcgatgtaaacttgccaaggaactcaaca 3048 Query: 412 ataagcacctggagcacaaccgttatggctataatggcaatgaagaggcggttccctgca 471 |||||| |||| || ||||| |||||||| | |||||| || ||||| ||||||| | | Sbjct: 3047 ataagcgcctgcagtacaactgttatggcaacaatggccataaagagatggttcccagta 2988 Query: 472 atacccttgaaaatattcagctcatctggtttccgagcgttgaactcactgaacacttga 531 || |||||||| || ||||||||||| || |||| ||| ||||| ||| ||||||| ||| Sbjct: 2987 atgcccttgaatatgttcagctcatcgggcttcctagcattgaattcattgaacacctga 2928 Query: 532 cagagaacaaatgtgttgaatatgaaggtattttt 566 |||||||||||||| |||||||||||||||||||| Sbjct: 2927 cagagaacaaatgtattgaatatgaaggtattttt 2893
>gb|BT016266.1| Zea mays clone Contig99 mRNA sequence Length = 885 Score = 180 bits (91), Expect = 3e-42 Identities = 226/271 (83%) Strand = Plus / Minus Query: 298 ataagctttcccacgagtgctaacggccagctgataaaagcaagacctatggacaccaac 357 |||||||||||||||| ||| | |||||||||| |||||||||||||| || |||||| Sbjct: 549 ataagctttcccacgaatgccagtggccagctgaagaaagcaagacctatcgataccaac 490 Query: 358 cacagctgccagctcaatctgactgttgtcgtgaacttaccaagaaactcgatgataagc 417 ||||||||||| || | || | ||||| | ||||| || || ||||| | ||||||| Sbjct: 489 cacagctgccaacttagcctaattgttgaggcaaacttgccgaggaactcaacgataagc 430 Query: 418 acctggagcacaaccgttatggctataatggcaatgaagaggcggttccctgcaataccc 477 ||||||| | ||| ||||| ||||| ||| |||| ||||| ||||||||| ||| ||| Sbjct: 429 gcctggagtataactgttattgctatgatgccaataaagagatggttccctgaaatgccc 370 Query: 478 ttgaaaatattcagctcatctggtttccgagcgttgaactcactgaacacttgacagaga 537 ||||| |||||||||||||||||||| || | ||||| || ||||||| || |||||| Sbjct: 369 ttgaatatattcagctcatctggtttacgtgaattgaattcgttgaacacctggcagaga 310 Query: 538 acaaatgtgttgaatatgaaggtatttttca 568 ||||||||||||||||||||||||||||||| Sbjct: 309 acaaatgtgttgaatatgaaggtatttttca 279
>dbj|AK067259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095I07, full insert sequence Length = 3596 Score = 180 bits (91), Expect = 3e-42 Identities = 229/275 (83%) Strand = Plus / Minus Query: 292 acagggataagctttcccacgagtgctaacggccagctgataaaagcaagacctatggac 351 |||||||||||||||||||| | ||| ||||||||||| | ||| || |||||||| ||| Sbjct: 3354 acagggataagctttcccacaaatgccaacggccagctaaaaaaggcgagacctattgac 3295 Query: 352 accaaccacagctgccagctcaatctgactgttgtcgtgaacttaccaagaaactcgatg 411 |||||||||| ||||||| | | |||| ||| | || ||||| ||||| ||||| | Sbjct: 3294 accaaccacaactgccaggtgagtctggttgtcgatgtaaacttgccaaggaactcaaca 3235 Query: 412 ataagcacctggagcacaaccgttatggctataatggcaatgaagaggcggttccctgca 471 |||||| |||| || ||||| |||||||| | |||||| || ||||| ||||||| | | Sbjct: 3234 ataagcgcctgcagtacaactgttatggcaacaatggccataaagagatggttcccagta 3175 Query: 472 atacccttgaaaatattcagctcatctggtttccgagcgttgaactcactgaacacttga 531 || |||||||| || ||||||||||| || |||| ||| ||||| ||| ||||||| ||| Sbjct: 3174 atgcccttgaatatgttcagctcatcgggcttcctagcattgaattcattgaacacctga 3115 Query: 532 cagagaacaaatgtgttgaatatgaaggtattttt 566 |||||||||||||| |||||||||||||||||||| Sbjct: 3114 cagagaacaaatgtattgaatatgaaggtattttt 3080
>dbj|AK120495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120H18, full insert sequence Length = 3659 Score = 172 bits (87), Expect = 8e-40 Identities = 228/275 (82%) Strand = Plus / Minus Query: 292 acagggataagctttcccacgagtgctaacggccagctgataaaagcaagacctatggac 351 |||||||||||||||||||| | ||| ||||||||||| | ||| || ||||| || ||| Sbjct: 3314 acagggataagctttcccacaaatgccaacggccagctaaaaaaggcgagacccattgac 3255 Query: 352 accaaccacagctgccagctcaatctgactgttgtcgtgaacttaccaagaaactcgatg 411 |||||||||| ||||||| | | |||| ||| | || ||||| ||||| ||||| | Sbjct: 3254 accaaccacaactgccaggtgagtctggttgtcgatgtaaacttgccaaggaactcaaca 3195 Query: 412 ataagcacctggagcacaaccgttatggctataatggcaatgaagaggcggttccctgca 471 |||||| |||| || ||||| |||||||| | |||||| || ||||| ||||||| | | Sbjct: 3194 ataagcgcctgcagtacaactgttatggcaacaatggccataaagagatggttcccagta 3135 Query: 472 atacccttgaaaatattcagctcatctggtttccgagcgttgaactcactgaacacttga 531 || |||||||| || ||||||||||| || |||| ||| ||||| ||| ||||||| ||| Sbjct: 3134 atgcccttgaatatgttcagctcatcgggcttcctagcattgaattcattgaacacctga 3075 Query: 532 cagagaacaaatgtgttgaatatgaaggtattttt 566 |||||||||||||| |||||||||||||||||||| Sbjct: 3074 cagagaacaaatgtattgaatatgaaggtattttt 3040
>dbj|AK120057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P10, full insert sequence Length = 1981 Score = 172 bits (87), Expect = 8e-40 Identities = 228/275 (82%) Strand = Plus / Minus Query: 292 acagggataagctttcccacgagtgctaacggccagctgataaaagcaagacctatggac 351 |||||||||||||||||||| | ||| ||||||||||| | ||| || |||||||| ||| Sbjct: 1558 acagggataagctttcccacaaatgccaacggccagctaaaaaaggcgagacctattgac 1499 Query: 352 accaaccacagctgccagctcaatctgactgttgtcgtgaacttaccaagaaactcgatg 411 |||||||||| ||||||| | | ||| ||| | || ||||| ||||| ||||| | Sbjct: 1498 accaaccacaactgccaggtgagcctggttgtcgatgtaaacttgccaaggaactcaaca 1439 Query: 412 ataagcacctggagcacaaccgttatggctataatggcaatgaagaggcggttccctgca 471 |||||| |||| || ||||| |||||||| | |||||| || ||||| ||||||| | | Sbjct: 1438 ataagcgcctgcagtacaactgttatggcaacaatggccataaagagatggttcccagta 1379 Query: 472 atacccttgaaaatattcagctcatctggtttccgagcgttgaactcactgaacacttga 531 || |||||||| || ||||||||||| || |||| ||| ||||| ||| ||||||| ||| Sbjct: 1378 atgcccttgaatatgttcagctcatcgggcttcctagcattgaattcattgaacacctga 1319 Query: 532 cagagaacaaatgtgttgaatatgaaggtattttt 566 |||||||||||||| |||||||||||||||||||| Sbjct: 1318 cagagaacaaatgtattgaatatgaaggtattttt 1284
>gb|AY111685.1| Zea mays CL36308_1 mRNA sequence Length = 628 Score = 151 bits (76), Expect = 3e-33 Identities = 217/264 (82%) Strand = Plus / Plus Query: 298 ataagctttcccacgagtgctaacggccagctgataaaagcaagacctatggacaccaac 357 |||||||||||||||| ||| | |||||||||| |||||||||||||| || |||||| Sbjct: 312 ataagctttcccacgaatgccagtggccagctgaagaaagcaagacctatcgataccaac 371 Query: 358 cacagctgccagctcaatctgactgttgtcgtgaacttaccaagaaactcgatgataagc 417 ||||||||||| || | || ||||||| | ||||| || || ||||| | ||||||| Sbjct: 372 cacagctgccaacttagcctaactgttgaggcaaacttgccgaggaactcaacgataagc 431 Query: 418 acctggagcacaaccgttatggctataatggcaatgaagaggcggttccctgcaataccc 477 ||||||| | ||| ||||| |||| ||| |||| || | ||||||||| ||| ||| Sbjct: 432 gcctggagtataactgttattactatgatgccaataaaaggatggttccctgaaatgccc 491 Query: 478 ttgaaaatattcagctcatctggtttccgagcgttgaactcactgaacacttgacagaga 537 ||||| |||||||||||||||||||| || | ||||| || ||||||| || |||||| Sbjct: 492 ttgaatatattcagctcatctggtttacgtgaattgaattcgttgaacacctggcagaga 551 Query: 538 acaaatgtgttgaatatgaaggta 561 |||||||||||||||||||||||| Sbjct: 552 acaaatgtgttgaatatgaaggta 575
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 529 tgacagagaacaaatgtgttgaatatgaaggtattttt 566 ||||||||||||||||| |||||||||||||||||||| Sbjct: 83323 tgacagagaacaaatgtattgaatatgaaggtattttt 83360 Score = 60.0 bits (30), Expect = 8e-06 Identities = 90/110 (81%) Strand = Plus / Plus Query: 418 acctggagcacaaccgttatggctataatggcaatgaagaggcggttccctgcaataccc 477 ||||| || ||||| |||||||| | |||||| || ||||| ||||||| | ||| ||| Sbjct: 83068 acctgcagtacaactgttatggcaacaatggccataaagagatggttcccagtaatgccc 83127 Query: 478 ttgaaaatattcagctcatctggtttccgagcgttgaactcactgaacac 527 ||||| || ||||||||||| || |||| ||| ||||| ||| ||||||| Sbjct: 83128 ttgaatatgttcagctcatcgggcttcctagcattgaattcattgaacac 83177 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 292 acagggataagctttcccacgagtgctaacggccagctg 330 |||||||||||||||||||| | ||| |||||||||||| Sbjct: 82661 acagggataagctttcccacaaatgccaacggccagctg 82699 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 340 agacctatggacaccaaccacagctgccag 369 |||||||| ||||||||||||| ||||||| Sbjct: 82872 agacctattgacaccaaccacaactgccag 82901
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09, complete sequence Length = 152732 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 529 tgacagagaacaaatgtgttgaatatgaaggtattttt 566 ||||||||||||||||| |||||||||||||||||||| Sbjct: 11346 tgacagagaacaaatgtattgaatatgaaggtattttt 11383 Score = 60.0 bits (30), Expect = 8e-06 Identities = 90/110 (81%) Strand = Plus / Plus Query: 418 acctggagcacaaccgttatggctataatggcaatgaagaggcggttccctgcaataccc 477 ||||| || ||||| |||||||| | |||||| || ||||| ||||||| | ||| ||| Sbjct: 11091 acctgcagtacaactgttatggcaacaatggccataaagagatggttcccagtaatgccc 11150 Query: 478 ttgaaaatattcagctcatctggtttccgagcgttgaactcactgaacac 527 ||||| || ||||||||||| || |||| ||| ||||| ||| ||||||| Sbjct: 11151 ttgaatatgttcagctcatcgggcttcctagcattgaattcattgaacac 11200 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 292 acagggataagctttcccacgagtgctaacggccagctg 330 |||||||||||||||||||| | ||| |||||||||||| Sbjct: 10684 acagggataagctttcccacaaatgccaacggccagctg 10722 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 340 agacctatggacaccaaccacagctgccag 369 |||||||| ||||||||||||| ||||||| Sbjct: 10895 agacctattgacaccaaccacaactgccag 10924
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 529 tgacagagaacaaatgtgttgaatatgaaggtattttt 566 ||||||||||||||||| |||||||||||||||||||| Sbjct: 30607615 tgacagagaacaaatgtattgaatatgaaggtattttt 30607652 Score = 60.0 bits (30), Expect = 8e-06 Identities = 90/110 (81%) Strand = Plus / Plus Query: 418 acctggagcacaaccgttatggctataatggcaatgaagaggcggttccctgcaataccc 477 ||||| || ||||| |||||||| | |||||| || ||||| ||||||| | ||| ||| Sbjct: 30607360 acctgcagtacaactgttatggcaacaatggccataaagagatggttcccagtaatgccc 30607419 Query: 478 ttgaaaatattcagctcatctggtttccgagcgttgaactcactgaacac 527 ||||| || ||||||||||| || |||| ||| ||||| ||| ||||||| Sbjct: 30607420 ttgaatatgttcagctcatcgggcttcctagcattgaattcattgaacac 30607469 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 292 acagggataagctttcccacgagtgctaacggccagctg 330 |||||||||||||||||||| | ||| |||||||||||| Sbjct: 30606953 acagggataagctttcccacaaatgccaacggccagctg 30606991 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 340 agacctatggacaccaaccacagctgccag 369 |||||||| ||||||||||||| ||||||| Sbjct: 30607164 agacctattgacaccaaccacaactgccag 30607193
>emb|AJ310848.1|HVU310848 Hordeum vulgare partial CA9 gene for P-type ATPase Length = 1782 Score = 60.0 bits (30), Expect = 8e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 487 ttcagctcatctggtttccgagcgttgaactcactgaacacttgacagagaacaaatgtg 546 |||||||| |||||||| || || |||||||| | ||||| ||||| || ||||||||| Sbjct: 1499 ttcagctcttctggtttacgtgcattgaactcgttaaacacctgacacaggacaaatgtg 1440 Query: 547 ttgaatatgaaggtatttttca 568 |||||||| || | |||||||| Sbjct: 1439 ttgaatataaatgaatttttca 1418
>ref|NM_180869.1| Arabidopsis thaliana ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding AT5G57110 (ACA8) transcript variant AT5G57110.1 mRNA, complete cds Length = 3603 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 492 ctcatctggtttccgagcgttgaactcactgaacacttgacagagaacaaatgtgttgaa 551 |||||||||||| ||||| ||||||||| |||| |||| ||||||||||| | |||||| Sbjct: 3061 ctcatctggtttacgagcattgaactcattgaaagcttggcagagaacaaaggcgttgaa 3002
>ref|NM_125093.3| Arabidopsis thaliana ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calmodulin binding AT5G57110 (ACA8) transcript variant AT5G57110.2 mRNA, complete cds Length = 3619 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 492 ctcatctggtttccgagcgttgaactcactgaacacttgacagagaacaaatgtgttgaa 551 |||||||||||| ||||| ||||||||| |||| |||| ||||||||||| | |||||| Sbjct: 3077 ctcatctggtttacgagcattgaactcattgaaagcttggcagagaacaaaggcgttgaa 3018
>emb|AJ249352.1|ATH249352 Arabidopsis thaliana mRNA for plasma membrane Ca2+-ATPase (aca8 gene) Length = 3525 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 492 ctcatctggtttccgagcgttgaactcactgaacacttgacagagaacaaatgtgttgaa 551 |||||||||||| ||||| ||||||||| |||| |||| ||||||||||| | |||||| Sbjct: 3063 ctcatctggtttacgagcattgaactcattgaaagcttggcagagaacaaaggcgttgaa 3004
>gb|AY069869.1| Arabidopsis thaliana AT5g57110/MUL3_5 mRNA, complete cds Length = 3575 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 492 ctcatctggtttccgagcgttgaactcactgaacacttgacagagaacaaatgtgttgaa 551 |||||||||||| ||||| ||||||||| |||| |||| ||||||||||| | |||||| Sbjct: 3063 ctcatctggtttacgagcattgaactcattgaaagcttggcagagaacaaaggcgttgaa 3004
>gb|AC144721.18| Medicago truncatula clone mth2-11o23, complete sequence Length = 135959 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 514 aactcactgaacacttgacagagaacaaatgtgttgaatat 554 |||||| | ||||||||||| ||||||||||| |||||||| Sbjct: 117044 aactcattaaacacttgacaaagaacaaatgtattgaatat 117084
>gb|AC150866.2| Bos taurus BAC CH240-290G4 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 170911 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 80 ctagtgtatttacaaatccaaa 101 |||||||||||||||||||||| Sbjct: 11622 ctagtgtatttacaaatccaaa 11601
>gb|AC150516.2| Bos taurus BAC CH240-117L9 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 237116 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 ctagtgtatttacaaatccaaa 101 |||||||||||||||||||||| Sbjct: 1936 ctagtgtatttacaaatccaaa 1957
>gb|AC151906.3| Mus musculus BAC clone RP23-177B17 from chromosome 9, complete sequence Length = 215508 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 245 tggctgggcagcagcaagagaa 266 |||||||||||||||||||||| Sbjct: 163655 tggctgggcagcagcaagagaa 163634
>gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, complete sequence Length = 200891 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 232 ccagcctctttcttggctgggcagc 256 |||||||||| |||||||||||||| Sbjct: 193576 ccagcctcttgcttggctgggcagc 193552
>gb|BC022081.2| Homo sapiens THAP domain containing, apoptosis associated protein 3, mRNA (cDNA clone IMAGE:4813302), with apparent retained intron Length = 1244 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tccttcgcatcaccagcctct 240 ||||||||||||||||||||| Sbjct: 670 tccttcgcatcaccagcctct 650
>gb|AC138739.8| Mus musculus chromosome 9, clone RP23-380A10, complete sequence Length = 217813 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 54 gagccctaatattatccacttcaaa 78 |||||||||||||||||||| |||| Sbjct: 36672 gagccctaatattatccactgcaaa 36648
>emb|AL031447.4|HS126A5 Human DNA sequence from clone RP1-126A5 on chromosome 1p36.21-36.33 Contains the 3' end of the gene for a novel DnaJ domain-containing protein, the gene for a novel THAP domain-containing protein, the PHF13 gene for PHD finger protein 13, the gene for a novel protein (KIAA0469), the 3' end of the HKR3 gene for GLI-Kruppel family member HKR3 and two CpG islands, complete sequence Length = 112158 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tccttcgcatcaccagcctct 240 ||||||||||||||||||||| Sbjct: 67882 tccttcgcatcaccagcctct 67902
>emb|CR620139.1| full-length cDNA clone CS0DJ014YD15 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1187 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tccttcgcatcaccagcctct 240 ||||||||||||||||||||| Sbjct: 665 tccttcgcatcaccagcctct 645
>emb|CR609298.1| full-length cDNA clone CS0DB007YB01 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) Length = 1190 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tccttcgcatcaccagcctct 240 ||||||||||||||||||||| Sbjct: 669 tccttcgcatcaccagcctct 649
>emb|CR601567.1| full-length cDNA clone CS0DN003YI06 of Adult brain of Homo sapiens (human) Length = 1227 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tccttcgcatcaccagcctct 240 ||||||||||||||||||||| Sbjct: 681 tccttcgcatcaccagcctct 661
>emb|CR600833.1| full-length cDNA clone CS0DF009YJ04 of Fetal brain of Homo sapiens (human) Length = 1220 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tccttcgcatcaccagcctct 240 ||||||||||||||||||||| Sbjct: 665 tccttcgcatcaccagcctct 645
>emb|CR600561.1| full-length cDNA clone CS0DC016YK23 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 593 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tccttcgcatcaccagcctct 240 ||||||||||||||||||||| Sbjct: 32 tccttcgcatcaccagcctct 12
>gb|AC102391.12| Mus musculus chromosome 18, clone RP24-62K22, complete sequence Length = 196455 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 ctttcttggctgggcagcagc 259 ||||||||||||||||||||| Sbjct: 62363 ctttcttggctgggcagcagc 62383
>gb|BC092427.1| Homo sapiens THAP domain containing, apoptosis associated protein 3, mRNA (cDNA clone MGC:102992 IMAGE:30376814), complete cds Length = 1379 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tccttcgcatcaccagcctct 240 ||||||||||||||||||||| Sbjct: 805 tccttcgcatcaccagcctct 785
>gb|AC096663.1| Homo sapiens BAC clone RP11-103L19 from 2, complete sequence Length = 152416 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 cctctttcttggctgggcagc 256 ||||||||||||||||||||| Sbjct: 18709 cctctttcttggctgggcagc 18689
>dbj|AB023042.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUL3 Length = 82010 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 492 ctcatctggtttccgagcgttgaactcactgaa 524 |||||||||||| ||||| ||||||||| |||| Sbjct: 16464 ctcatctggtttacgagcattgaactcattgaa 16496
>gb|AC161481.4| Mus musculus chromosome 18, clone RP23-336C20, complete sequence Length = 210643 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 ctttcttggctgggcagcagc 259 ||||||||||||||||||||| Sbjct: 180091 ctttcttggctgggcagcagc 180111
>gb|BC005114.1| Homo sapiens THAP domain containing, apoptosis associated protein 3, mRNA (cDNA clone IMAGE:4053044), partial cds Length = 964 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tccttcgcatcaccagcctct 240 ||||||||||||||||||||| Sbjct: 371 tccttcgcatcaccagcctct 351
>dbj|AP006429.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17D07, TM0322, complete sequence Length = 109570 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 510 gttgaactcactgaacacttgacagagaacaaa 542 |||||||||| |||| ||||| ||||||||||| Sbjct: 2632 gttgaactcattgaaaacttggcagagaacaaa 2600
>gb|AY573080.1| Euxesta notata 12S ribosomal RNA gene, partial sequence; mitochondrial Length = 717 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 taaaactccacgcaaaaact 153 |||||||||||||||||||| Sbjct: 25 taaaactccacgcaaaaact 6
>ref|XM_464075.1| Oryza sativa (japonica cultivar-group), mRNA Length = 243 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cacaccgtcgtcttccttcg 226 |||||||||||||||||||| Sbjct: 90 cacaccgtcgtcttccttcg 71
>gb|AC110194.11| Mus musculus chromosome 7, clone RP23-238J3, complete sequence Length = 223663 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ggctgggcagcagcaagaga 265 |||||||||||||||||||| Sbjct: 74427 ggctgggcagcagcaagaga 74446
>gb|AC133177.3| Mus musculus BAC clone RP24-116D7 from chromosome 18, complete sequence Length = 185838 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 ctgcaatacccttgaaaata 486 |||||||||||||||||||| Sbjct: 4520 ctgcaatacccttgaaaata 4501
>gb|BC054278.1| Xenopus laevis peroxiredoxin 6, mRNA (cDNA clone MGC:64522 IMAGE:6877839), complete cds Length = 1424 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 555 gaaggtatttttcagcattt 574 |||||||||||||||||||| Sbjct: 938 gaaggtatttttcagcattt 919
>gb|AC126671.3| Mus musculus BAC clone RP24-472G2 from chromosome 16, complete sequence Length = 172980 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 ctctttcttggctgggcagcagca 260 ||||||||||||| |||||||||| Sbjct: 139716 ctctttcttggctaggcagcagca 139739
>gb|AC140352.3| Mus musculus BAC clone RP23-223L7 from chromosome 18, complete sequence Length = 165504 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 ctgcaatacccttgaaaata 486 |||||||||||||||||||| Sbjct: 140872 ctgcaatacccttgaaaata 140853
>emb|AL121715.15|HSJ193M11 Human DNA sequence from clone RP1-193M11 on chromosome 6 Contains a leucine aminopeptidase pseudogene and a CpG island, complete sequence Length = 52363 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 caatgaagaggcggttccct 468 |||||||||||||||||||| Sbjct: 13889 caatgaagaggcggttccct 13870
>emb|AL033397.7|HS27K12 Human DNA sequence from clone RP1-27K12 on chromosome 6p11.2-12.3 Contains the GCLC gene for glutamate-cysteine ligase catalytic subunit (GCS), a novel gene and one CpG island, complete sequence Length = 164027 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aaaactccacgcaaaaactg 154 |||||||||||||||||||| Sbjct: 3150 aaaactccacgcaaaaactg 3169
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 tatttacaaatccaaatcaccaga 109 |||||||||||||||| ||||||| Sbjct: 182159 tatttacaaatccaaaccaccaga 182136
>gb|AC090578.6| Homo sapiens chromosome 8, clone RP11-642C5, complete sequence Length = 187209 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ttcaaacctagtgtatttac 92 |||||||||||||||||||| Sbjct: 35855 ttcaaacctagtgtatttac 35874
>gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, complete sequence Length = 186881 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 gcaatacccttgaaaatatt 488 |||||||||||||||||||| Sbjct: 67523 gcaatacccttgaaaatatt 67542
>ref|XM_691925.1| PREDICTED: Danio rerio similar to Collagen alpha 1(XII) chain precursor (LOC568589), mRNA Length = 2139 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 actcactgaacacttgacag 534 |||||||||||||||||||| Sbjct: 447 actcactgaacacttgacag 428
>gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, complete sequence Length = 173414 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ttcttggctgggcagcagca 260 |||||||||||||||||||| Sbjct: 38642 ttcttggctgggcagcagca 38623
>gb|AC160759.4| Mus musculus BAC clone RP23-333K15 from chromosome 16, complete sequence Length = 190127 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 ctctttcttggctgggcagcagca 260 ||||||||||||| |||||||||| Sbjct: 121545 ctctttcttggctaggcagcagca 121522
>emb|BX932314.2| Gallus gallus finished cDNA, clone ChEST357o21 Length = 1070 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aatccccaaagtgagagccc 59 |||||||||||||||||||| Sbjct: 994 aatccccaaagtgagagccc 975
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 aacagggataagctttccca 310 |||||||||||||||||||| Sbjct: 15570877 aacagggataagctttccca 15570896
>gb|AC155714.6| Mus musculus 10 BAC RP24-165I13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 167195 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 aatacccttgaaaatattca 490 |||||||||||||||||||| Sbjct: 96016 aatacccttgaaaatattca 95997
>gb|AC068812.13|AC068812 Homo sapiens chromosome N/A clone RP11-201E13, complete sequence Length = 177862 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 tcgcatcaccagcctctttcttgg 247 |||||||||| ||||||||||||| Sbjct: 54366 tcgcatcacctgcctctttcttgg 54343
>dbj|AP005737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062P14 Length = 168223 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 aacagggataagctttccca 310 |||||||||||||||||||| Sbjct: 89360 aacagggataagctttccca 89379
>ref|XM_311023.2| Anopheles gambiae str. PEST ENSANGP00000008142 (ENSANGG00000006144), partial mRNA Length = 1569 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 caccacctcgatgtgcttca 208 |||||||||||||||||||| Sbjct: 984 caccacctcgatgtgcttca 965
>emb|AL162464.5|CNS01RHT Human chromosome 14 DNA sequence BAC R-81F13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 170110 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 tcgcatcaccagcctctttcttgg 247 |||||||||| ||||||||||||| Sbjct: 24747 tcgcatcacctgcctctttcttgg 24770
>gb|AC101764.11| Mus musculus chromosome 3, clone RP24-471B15, complete sequence Length = 151388 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 242 tcttggctgggcagcagcaagagaacat 269 ||||||| |||||| ||||||||||||| Sbjct: 84135 tcttggcagggcaggagcaagagaacat 84162
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccagcctctttcttggctgg 251 |||||||||||||||||||| Sbjct: 58149 ccagcctctttcttggctgg 58130
>dbj|AB019437.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete sequence, 1 of 5 Length = 200000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccagcctctttcttggctgg 251 |||||||||||||||||||| Sbjct: 58149 ccagcctctttcttggctgg 58130 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,873,307 Number of Sequences: 3902068 Number of extensions: 4873307 Number of successful extensions: 95482 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95300 Number of HSP's gapped (non-prelim): 179 length of query: 577 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 554 effective length of database: 17,143,297,704 effective search space: 9497386928016 effective search space used: 9497386928016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)