ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19f02 |
|---|---|
| Clone Library Name | barley_pub |
>SQV2_CAEEL (Q9N491) Beta-1,3-galactosyltransferase sqv-2 (EC 2.4.1.134)| (Squashed vulva protein 2) Length = 330 Score = 58.9 bits (141), Expect = 1e-08 Identities = 36/122 (29%), Positives = 64/122 (52%) Frame = -1 Query: 677 NAAETFDAEFYAKVNDDIYINVDTLSAMLETHWDKPRVYIGCMKSGEVFSEATHKWYEPD 498 +A F +F+ K + D ++ + L L+ D P +Y G + G KW EP+ Sbjct: 144 HAFANFKFKFFLKTDIDSFVRITPLIINLKQIQD-PMLYWGFL-DGRAKPFRKGKWKEPE 201 Query: 497 WWKFGDGKSYFRHASGEMFIVSRAVAQFISINRSVLRTYAHDDVSVGSWMIGLAVKHVNE 318 W Y + G +++S + +F++IN + R Y ++DVSVG+W+ GL VK+V++ Sbjct: 202 W---NLCDRYLPYQLGGGYVLSYELIRFLAINAQLFRHYRNEDVSVGAWIGGLDVKYVHD 258 Query: 317 AK 312 + Sbjct: 259 PR 260
>B3GT6_HUMAN (Q96L58) Beta-1,3-galactosyltransferase 6 (EC 2.4.1.134) (beta| 3GalT6) (Galactosylxylosylprotein 3-beta-galactosyltransferase) (UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6) (Galactosyltransferase II) (GAG GalTII) Length = 329 Score = 44.7 bits (104), Expect = 3e-04 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Frame = -1 Query: 653 EFYAKVNDDIYINVDTLSAMLETHWD--KPRVYIGCMKSGEVFSEATHKWYEPDWWKFGD 480 EF K +DD + +D L A L + R+Y G SG + +W E W Sbjct: 150 EFVLKADDDSFARLDALLAELRAREPARRRRLYWGFF-SGRGRVKPGGRWREAAWQLCD- 207 Query: 479 GKSYFRHASGEMFIVSRAVAQFISINRSVLRTYAHDDVSVGSWMIGLAVKHVNEAK 312 Y +A G +++S + ++ ++R LR + +DVS+G+W+ + V+ ++ + Sbjct: 208 --YYLPYALGGGYVLSADLVHYLRLSRDYLRAWHSEDVSLGAWLAPVDVQREHDPR 261
>B3GT6_MOUSE (Q91Z92) Beta-1,3-galactosyltransferase 6 (EC 2.4.1.134) (Beta| 3GalT6) (Galactosylxylosylprotein 3-beta-galactosyltransferase) (UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6) (Galactosyltransferase II) (GAG GalTII) Length = 325 Score = 44.7 bits (104), Expect = 3e-04 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Frame = -1 Query: 668 ETFDAEFYAKVNDDIYINVDTLSAMLETHWD--KPRVYIGCMKSGEVFSEATHKWYEPDW 495 E D EF K +DD + +D + L + R+Y G SG + +W E W Sbjct: 141 ERVDFEFVLKADDDSFARLDAILVDLRAREPARRRRLYWGFF-SGRGRVKPGGRWREAAW 199 Query: 494 WKFGDGKSYFRHASGEMFIVSRAVAQFISINRSVLRTYAHDDVSVGSWMIGLAVKHVNEA 315 Y +A G +++S + ++ ++R LR + +DVS+G+W+ + V+ ++ Sbjct: 200 QLCD---YYLPYALGGGYVLSADLVHYLRLSREYLRAWHSEDVSLGTWLAPVDVQREHDP 256 Query: 314 K 312 + Sbjct: 257 R 257
>B3GT1_PONPY (Q9MYM7) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (Beta3GalT1) Length = 326 Score = 37.0 bits (84), Expect = 0.056 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Frame = -1 Query: 656 AEFYAKVNDDIYINVDTLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFG 483 A++ K + DI++N+D L L KP R + G + +G + KWY P Sbjct: 170 AKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLY 227 Query: 482 DGKSYFRHASGEMFIVSRAVAQFISINRSVLRTYAHDDVSVG 357 +Y SG +I S VA+ I R +DV VG Sbjct: 228 PDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVG 269
>B3GT1_PANTR (Q7JK26) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (Beta3GalT1) Length = 326 Score = 37.0 bits (84), Expect = 0.056 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Frame = -1 Query: 656 AEFYAKVNDDIYINVDTLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFG 483 A++ K + DI++N+D L L KP R + G + +G + KWY P Sbjct: 170 AKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLY 227 Query: 482 DGKSYFRHASGEMFIVSRAVAQFISINRSVLRTYAHDDVSVG 357 +Y SG +I S VA+ I R +DV VG Sbjct: 228 PDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVG 269
>B3GT1_PANPA (Q7JK25) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (Beta3GalT1) Length = 326 Score = 37.0 bits (84), Expect = 0.056 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Frame = -1 Query: 656 AEFYAKVNDDIYINVDTLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFG 483 A++ K + DI++N+D L L KP R + G + +G + KWY P Sbjct: 170 AKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLY 227 Query: 482 DGKSYFRHASGEMFIVSRAVAQFISINRSVLRTYAHDDVSVG 357 +Y SG +I S VA+ I R +DV VG Sbjct: 228 PDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVG 269
>B3GT1_MOUSE (O54904) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (Beta3GalT1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (UDP-Gal:betaGlcNAc beta 1,3-galactosyltranferase-I) Length = 326 Score = 37.0 bits (84), Expect = 0.056 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Frame = -1 Query: 656 AEFYAKVNDDIYINVDTLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFG 483 A++ K + DI++N+D L L KP R + G + +G + KWY P Sbjct: 170 AKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLY 227 Query: 482 DGKSYFRHASGEMFIVSRAVAQFISINRSVLRTYAHDDVSVG 357 +Y SG +I S VA+ I R +DV VG Sbjct: 228 PDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVG 269
>B3GT1_HUMAN (Q9Y5Z6) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (Beta3GalT1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) Length = 326 Score = 37.0 bits (84), Expect = 0.056 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Frame = -1 Query: 656 AEFYAKVNDDIYINVDTLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFG 483 A++ K + DI++N+D L L KP R + G + +G + KWY P Sbjct: 170 AKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLY 227 Query: 482 DGKSYFRHASGEMFIVSRAVAQFISINRSVLRTYAHDDVSVG 357 +Y SG +I S VA+ I R +DV VG Sbjct: 228 PDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVG 269
>B3GT1_GORGO (Q7JK24) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (Beta3GalT1) Length = 326 Score = 37.0 bits (84), Expect = 0.056 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Frame = -1 Query: 656 AEFYAKVNDDIYINVDTLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFG 483 A++ K + DI++N+D L L KP R + G + +G + KWY P Sbjct: 170 AKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLY 227 Query: 482 DGKSYFRHASGEMFIVSRAVAQFISINRSVLRTYAHDDVSVG 357 +Y SG +I S VA+ I R +DV VG Sbjct: 228 PDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVG 269
>PVG3_SCHPO (Q9USX0) Beta-1,3-galactosyltransferase pvg3 (EC 2.4.1.134)| (Pyruvylated Gal-beta-1,3-epitope synthesis protein 3) (PvGal synthesis protein 3) Length = 378 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -1 Query: 659 DAEFYAKVNDDIYINVDTLSAMLETHWDKPRVYIG 555 D +F K +DD ++N+ L ML+ H K R Y G Sbjct: 203 DYDFIVKADDDSFLNLPRLFEMLKEHVGKSRFYFG 237
>PI5K1_ORYSA (Q6EX42) Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (EC| 2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) Length = 801 Score = 31.6 bits (70), Expect = 2.3 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Frame = -1 Query: 581 WDKPRVYIGCMKSGEVFSEATHKWYEPDW----WKFG--DGKSYFRHASGEMFI 438 W VYIG KSG++ +W D W G GK Y ++ASG +I Sbjct: 150 WADGNVYIGRWKSGKMNGSGVMQWINGDTLDCNWLNGLAHGKGYCKYASGACYI 203
>YHO0_YEAST (P38800) Hypothetical 149.7 kDa protein in IRE1-KSP1 intergenic| region Length = 1345 Score = 31.6 bits (70), Expect = 2.3 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +1 Query: 268 RAEHMAPEGHDEQHSFASFTCFTASPIIHEPTL 366 +AE P+GHDE +F +F F + + H P + Sbjct: 154 QAEEKTPDGHDEHTAFETFLSFAHNAVSHIPKI 186
>PCDGM_PANTR (Q5DRA2) Protocadherin gamma C5 precursor (PCDH-gamma-C5)| Length = 944 Score = 30.4 bits (67), Expect = 5.2 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +1 Query: 454 EACRKYDFPSPNFHQSGSYHLWVASEKT 537 + CR+ D PSP+F++ S +L V+S+ T Sbjct: 729 QCCRRQDSPSPDFYKQSSPNLQVSSDGT 756
>PCDGM_HUMAN (Q9Y5F6) Protocadherin gamma C5 precursor (PCDH-gamma-C5)| Length = 944 Score = 30.4 bits (67), Expect = 5.2 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +1 Query: 454 EACRKYDFPSPNFHQSGSYHLWVASEKT 537 + CR+ D PSP+F++ S +L V+S+ T Sbjct: 729 QCCRRQDSPSPDFYKQSSPNLQVSSDGT 756
>MTF1_RHIRA (Q01214) Putative transcription factor MTF1| Length = 353 Score = 30.4 bits (67), Expect = 5.2 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = +3 Query: 150 SLTSCSMMT*KKEMARENENLFSVTHSSQNPSSGKHCSSKS*T 278 ++TS S+++ K +R+ NLF+ T+SS NPSS S KS T Sbjct: 110 AITSPSVLSSYK--SRDFRNLFTTTNSSPNPSSPSPSSMKSHT 150
>Y030_UREPA (Q9PRB5) Hypothetical protein UU030| Length = 747 Score = 30.0 bits (66), Expect = 6.8 Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +1 Query: 340 SPIIHEPTLTSSCAYVRRTDL-FIEMN*ATALDTINISPEACRKYDFPSPNFHQSGSYHL 516 +PI+ PT+ ++CA++ +L + N +++ +NI+P ++ + N Q SY + Sbjct: 16 APIVIIPTILANCAHINSNELDNAKTNLKGSVEVVNINPYKTKQMLASNINKEQINSYFI 75 Query: 517 WV 522 ++ Sbjct: 76 FI 77
>LFNG_XENLA (P79948) Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 375 Score = 29.6 bits (65), Expect = 8.9 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -1 Query: 659 DAEFYAKVNDDIYINVDTLSAMLETHWDKPRVYIG 555 D +++ V+DD Y+NV TL +L + +YIG Sbjct: 188 DKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIG 222 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,605,496 Number of Sequences: 219361 Number of extensions: 1992050 Number of successful extensions: 5326 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5315 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
