ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precurs... 28 5.7
2STK23_MOUSE (Q9Z0G2) Serine/threonine-protein kinase 23 (EC 2.7.... 27 9.7
3PDP2_HUMAN (Q9P2J9) [Pyruvate dehydrogenase [lipoamide]]-phospha... 27 9.7
4STK23_HUMAN (Q9UPE1) Serine/threonine-protein kinase 23 (EC 2.7.... 27 9.7

>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II)
          Length = 833

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 83  IHXPVCNSLATXGRHSVYCVVLCCC 9
           +H P CN     G H V C   C C
Sbjct: 389 VHGPHCNVTCPAGLHGVDCAQACSC 413



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>STK23_MOUSE (Q9Z0G2) Serine/threonine-protein kinase 23 (EC 2.7.11.1)|
           (Muscle-specific serine kinase 1) (MSSK-1)
          Length = 565

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 158 LHSCRTLSIAAHERLFWLIRSFVSTIHXPVCNSLATXGRHSV 33
           +H C  L +  H+ L W+I+S    +  P   S+     H +
Sbjct: 157 VHVCMVLEVLGHQLLKWIIKSNYQGLPVPCVKSIVRQVLHGL 198



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>PDP2_HUMAN (Q9P2J9) [Pyruvate dehydrogenase [lipoamide]]-phosphatase 2,|
           mitochondrial precursor (EC 3.1.3.43) (PDP 2) (Pyruvate
           dehydrogenase phosphatase, catalytic subunit 2) (PDPC 2)
          Length = 529

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 266 ATAGDHXXXHVLGQQEFAGLWHCVGLTR 183
           A AGD     +LG QE  G+W C+ LTR
Sbjct: 282 ANAGDCRA--ILGVQEDNGMWSCLPLTR 307



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>STK23_HUMAN (Q9UPE1) Serine/threonine-protein kinase 23 (EC 2.7.11.1)|
           (Muscle-specific serine kinase 1) (MSSK-1)
          Length = 533

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 158 LHSCRTLSIAAHERLFWLIRSFVSTIHXPVCNSLATXGRHSV 33
           +H C  L +  H+ L W+I+S    +  P   S+     H +
Sbjct: 158 VHVCMVLEVLGHQLLKWIIKSNYQGLPVPCVKSIVRQVLHGL 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,869,631
Number of Sequences: 219361
Number of extensions: 488935
Number of successful extensions: 1020
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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