ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18p18 |
|---|---|
| Clone Library Name | barley_pub |
>TOP1_XENLA (P41512) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 829 Score = 37.7 bits (86), Expect = 0.032 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = -2 Query: 427 KAVRRHRKKAVGRHRKKAVRRHREKAVGRHREKAVRRH*KKAVDRE 290 K V +HR K +H++K V +H+EK V +HR+ +H K DRE Sbjct: 108 KEVEKHRVKDGEKHKEKDVEKHKEKDVEKHRDGEKHKHRDK--DRE 151 Score = 37.4 bits (85), Expect = 0.042 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = -2 Query: 442 QQH*SKAVRRHRKKAVGRHRKKAVRRHREKAVGRHREKAVRRH 314 ++H K + +H K V +HR K +H+EK V +H+EK V +H Sbjct: 97 EKHKEKDIEKH--KEVEKHRVKDGEKHKEKDVEKHKEKDVEKH 137 Score = 33.5 bits (75), Expect = 0.61 Identities = 13/38 (34%), Positives = 25/38 (65%) Frame = -2 Query: 442 QQH*SKAVRRHRKKAVGRHRKKAVRRHREKAVGRHREK 329 ++H K +H++K V +H++K V +HR+ +HR+K Sbjct: 111 EKHRVKDGEKHKEKDVEKHKEKDVEKHRDGEKHKHRDK 148 Score = 33.5 bits (75), Expect = 0.61 Identities = 15/41 (36%), Positives = 27/41 (65%) Frame = -2 Query: 415 RHRKKAVGRHRKKAVRRHREKAVGRHREKAVRRH*KKAVDR 293 +H++K + +H K V +HR K +H+EK V +H +K V++ Sbjct: 98 KHKEKDIEKH--KEVEKHRVKDGEKHKEKDVEKHKEKDVEK 136 Score = 30.4 bits (67), Expect = 5.2 Identities = 12/41 (29%), Positives = 25/41 (60%) Frame = -2 Query: 442 QQH*SKAVRRHRKKAVGRHRKKAVRRHREKAVGRHREKAVR 320 ++H K V +H++K V +HR +HR+K + +E+ ++ Sbjct: 119 EKHKEKDVEKHKEKDVEKHRDGEKHKHRDKDREKKKEEKMK 159 Score = 29.6 bits (65), Expect = 8.8 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = -2 Query: 445 DQQH*SKAVRRHRKKAVGRHRKKAVRRHREKAVGRHREKAVRRH 314 + +H K +HR++ +HR K +HR+ +H+EK + +H Sbjct: 66 NDKHREKDGEKHRERDGEKHRDKNGEKHRDGE--KHKEKDIEKH 107
>K0220_HUMAN (Q92617) Protein KIAA0220 (Fragment)| Length = 884 Score = 35.4 bits (80), Expect = 0.16 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 4/46 (8%) Frame = +2 Query: 293 SIDCLLSMPPDCLLS-MP--SDCFLSMPPDCFLS-MPPDCLLSMPP 418 S D L PP+CLL+ +P +D L PP+C L+ +PP L S PP Sbjct: 145 SADDNLKTPPECLLTPLPPSADDNLKTPPECLLTPLPPSALPSAPP 190 Score = 32.7 bits (73), Expect = 1.0 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 15/68 (22%) Frame = +2 Query: 293 SIDCLLSMPPDCLLS-MP--SDCFLSMPPDCFLS-----------MPPDCLLS-MPPDGF 427 S D L PP+C+L+ +P +D L PP+C L+ PP+CLL+ +PP Sbjct: 107 SADDNLKTPPECVLTPLPPSADDNLKTPPECVLTPLPPSADDNLKTPPECLLTPLPPSAD 166 Query: 428 RSMLLIPE 451 ++ PE Sbjct: 167 DNLKTPPE 174
>YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5| Length = 317 Score = 34.3 bits (77), Expect = 0.36 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Frame = -2 Query: 430 SKAVRRHRKKAVGRHRKKAVRR--HREKAVGRHREKAVRRH 314 S AV RHR AV RHR A +R +++ V R R A RRH Sbjct: 274 SAAVFRHRNVAVNRHRAVAKKRVVAKKRVVARKRVVAARRH 314
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 33.9 bits (76), Expect = 0.47 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = -3 Query: 408 ERRQSGGIERKQSGGIERKQSEGIERRQSGGIERRQS 298 ER++S ERK+S ERK+S+ ER++S ERR+S Sbjct: 46 ERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRS 82 Score = 32.7 bits (73), Expect = 1.0 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = -3 Query: 459 RSGSGISNIDRKPSGGIERRQSGGIERKQSGGIERKQSEGIERRQS 322 +S S + +RK S ER++S ERK+S ERK+S ERR+S Sbjct: 37 KSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRS 82
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 33.9 bits (76), Expect = 0.47 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = -3 Query: 408 ERRQSGGIERKQSGGIERKQSEGIERRQSGGIERRQS 298 ER++S ERK+S ERK+S+ ER++S ERR+S Sbjct: 46 ERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRS 82 Score = 32.7 bits (73), Expect = 1.0 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = -3 Query: 459 RSGSGISNIDRKPSGGIERRQSGGIERKQSGGIERKQSEGIERRQS 322 +S S + +RK S ER++S ERK+S ERK+S ERR+S Sbjct: 37 KSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRS 82
>PALC_NEUCR (Q7SEM8) pH-response regulator protein palC| Length = 490 Score = 33.9 bits (76), Expect = 0.47 Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 17/115 (14%) Frame = -3 Query: 600 LFLSLCQAFIEVAYPYCAACFGRCYTNGGALITQC-PSLLDAVSQLPIRSGSGISNIDRK 424 LF LC A E A + C G GGA +T+ LD + + ID + Sbjct: 261 LFARLCLAASEHAAQAYSLCAGLARAEGGAKVTESFLKYLDNLRRTSRAKACRFFGIDSE 320 Query: 423 PSG----------------GIERRQSGGIERKQSGGIERKQSEGIERRQSGGIER 307 G G+ER S G K+SGG+ R + + E+R+ +ER Sbjct: 321 LGGQTGTAIAWLNAGLQELGVERNPSEG-GSKRSGGLGRLKEKWTEKREDKKVER 374
>FBX11_RAT (Q7TSL3) F-box only protein 11| Length = 843 Score = 33.5 bits (75), Expect = 0.61 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +1 Query: 502 CDQRSSVGIASSKACSTIRICDLNKCLAK*EEKGGLISTQHPHGIVSD*GVRN 660 C S+V ++ AC TI+ C+++ C E GL T H GI D + N Sbjct: 299 CTVGSAVCVSGQGACPTIKHCNISDC-----ENVGLYITDHAQGIYEDNEISN 346
>FBX11_HUMAN (Q86XK2) F-box only protein 11 (Vitiligo-associated protein VIT-1)| Length = 843 Score = 33.5 bits (75), Expect = 0.61 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +1 Query: 502 CDQRSSVGIASSKACSTIRICDLNKCLAK*EEKGGLISTQHPHGIVSD*GVRN 660 C S+V ++ AC TI+ C+++ C E GL T H GI D + N Sbjct: 299 CTVGSAVCVSGQGACPTIKHCNISDC-----ENVGLYITDHAQGIYEDNEISN 346
>DAF_PONPY (P49457) Complement decay-accelerating factor precursor (CD55| antigen) (Fragment) Length = 340 Score = 33.1 bits (74), Expect = 0.80 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +2 Query: 56 KTTTKNYEPNCRLTRNTAMAQDSKNFHR-LHQSGSG 160 KTTTK PN + TR+T +++ +K+FH GSG Sbjct: 274 KTTTKTTTPNAQATRSTPVSRTTKHFHETTPNKGSG 309
>DAF_HUMAN (P08174) Complement decay-accelerating factor precursor (CD55| antigen) Length = 381 Score = 33.1 bits (74), Expect = 0.80 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +2 Query: 56 KTTTKNYEPNCRLTRNTAMAQDSKNFHR-LHQSGSG 160 KTTTK PN + TR+T +++ +K+FH GSG Sbjct: 315 KTTTKTTTPNAQATRSTPVSRTTKHFHETTPNKGSG 350
>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein| 18) (Small proline-rich-like epidermal differentiation complex protein 5A) Length = 118 Score = 32.0 bits (71), Expect = 1.8 Identities = 13/34 (38%), Positives = 13/34 (38%) Frame = +2 Query: 317 PPDCLLSMPSDCFLSMPPDCFLSMPPDCLLSMPP 418 PP C P C PP C PP C PP Sbjct: 13 PPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPP 46
>CYSD_RHITR (O33580) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) Length = 317 Score = 31.6 bits (70), Expect = 2.3 Identities = 18/64 (28%), Positives = 31/64 (48%) Frame = -3 Query: 531 CYTNGGALITQCPSLLDAVSQLPIRSGSGISNIDRKPSGGIERRQSGGIERKQSGGIERK 352 C+ GA+ + +L D +++L I + + RQ I+R QSG +E+K Sbjct: 266 CFPLTGAIRSTATTLEDVIAELEIAT--------------VSERQGRAIDRDQSGSMEKK 311 Query: 351 QSEG 340 + EG Sbjct: 312 KREG 315
>AB1IP_XENLA (Q6DCV1) Amyloid beta A4 precursor protein-binding family B member| 1-interacting protein (APBB1-interacting protein 1) Length = 653 Score = 31.2 bits (69), Expect = 3.0 Identities = 20/46 (43%), Positives = 22/46 (47%) Frame = +2 Query: 317 PPDCLLSMPSDCFLSMPPDCFLSMPPDCLLSMPPDGFRSMLLIPEP 454 PP+ L P+D FL PP F PPD L PP F S P P Sbjct: 531 PPEPL--QPADDFLPPPPPDFFDAPPDFLPPSPP-SFMSNAENPPP 573
>VACHT_BRARE (P59845) Probable vesicular acetylcholine transporter (VAChT)| Length = 493 Score = 31.2 bits (69), Expect = 3.0 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 639 YNAMRMLRGNESSLFLSLCQAFIEVAYPYCAACFG 535 Y A+ M+ SS + C+ F E+ +P C CFG Sbjct: 318 YGALGMVIIGASSCTVPACKTFGELVFPLCGICFG 352
>DNA43_YEAST (P32354) Protein DNA43| Length = 571 Score = 31.2 bits (69), Expect = 3.0 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = -3 Query: 444 ISNIDRKPSGGIERRQSGGIERKQSGGIERKQSEGIERRQSGGIERRQSIESVGTAASEN 265 ++N+D K IE ++S + R+ + R++S G+E + G RQ ++ +A + Sbjct: 421 LANLDNKRRKIIETKKSTALSRELGKIMRRRESSGLEDKSVG---ERQKMKRTTESALQT 477 Query: 264 GLV 256 GL+ Sbjct: 478 GLI 480
>LC7L2_MOUSE (Q7TNC4) Putative RNA-binding protein Luc7-like 2 (CGI-74 homolog)| Length = 392 Score = 30.8 bits (68), Expect = 4.0 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = -2 Query: 430 SKAVRRHRKKAVGRHRKKAVR--------RHREKAVGRHREKAVRRH*KKAVDR 293 S+ RRHR +++ R RK+ R RHR ++ R R ++ +R + DR Sbjct: 273 SREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSSRDR 326
>LC7L2_HUMAN (Q9Y383) Putative RNA-binding protein Luc7-like 2| Length = 392 Score = 30.8 bits (68), Expect = 4.0 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = -2 Query: 430 SKAVRRHRKKAVGRHRKKAVR--------RHREKAVGRHREKAVRRH*KKAVDR 293 S+ RRHR +++ R RK+ R RHR ++ R R ++ +R + DR Sbjct: 273 SREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSSRDR 326
>LARP4_MOUSE (Q8BWW4) La-related protein 4 (La ribonucleoprotein domain family| member 4) Length = 719 Score = 30.4 bits (67), Expect = 5.2 Identities = 18/49 (36%), Positives = 22/49 (44%) Frame = +2 Query: 29 HPMLSCVHCKTTTKNYEPNCRLTRNTAMAQDSKNFHRLHQSGSGYVLVD 175 H LS CK Y P+C TRNTA ++S + L Y L D Sbjct: 53 HTELSEDMCKEYEVMYSPSCETTRNTADVEESADGMILGPEDLSYQLYD 101
>TOP1_HUMAN (P11387) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 765 Score = 30.4 bits (67), Expect = 5.2 Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Frame = -2 Query: 463 YKIRFWDQQH*SKAVRRHRKKAVGRH----RKKAVRRHREKAVGRHREKAVRRH*KKAVD 296 +K + D++H K ++ + + +H K + ++H+EK +H++ + +H K D Sbjct: 24 HKDKHKDREHRHKEHKKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKD 83 Query: 295 RECWDCGI*ERTCNQWPRARGDQR 224 R+ E+ + RA GD + Sbjct: 84 RDK------EKRKEEKVRASGDAK 101
>FIP1_BRARE (Q5XJD3) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| Length = 570 Score = 30.0 bits (66), Expect = 6.7 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = -2 Query: 427 KAVRRHRKKAVG-RHRKKAVRRHREKAVGRH---REKAVRRH 314 + RHR++A + + RRHREK GRH R + RRH Sbjct: 489 RGYERHRERASREKEERHGGRRHREKEEGRHKSSRSSSRRRH 530
>NPIP_HUMAN (Q9UND3) Nuclear pore complex-interacting protein (NPIP)| Length = 350 Score = 30.0 bits (66), Expect = 6.7 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Frame = +2 Query: 293 SIDCLLSMPPDCLLS-MPSDCFLSMPP--DCFLSMPPDCLLSMP 415 S D L PP+CLL+ +P S PP D L PP+C+ S+P Sbjct: 300 SADDNLKTPPECLLTPLPP----SAPPSADDNLKTPPECVCSLP 339
>YJ42_YEAST (P47122) Hypothetical 43.2 kDa protein in HAM1-PEM2 intergenic| region Length = 385 Score = 29.6 bits (65), Expect = 8.8 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = -3 Query: 486 LDAVSQLPIRSGSGISNIDRKPSGGIERRQSGGIERKQSGGIERKQSEGIERRQSGGIER 307 +DA+S L + G+ +DR G+ER + E + G + + ++RR Sbjct: 309 IDAISDLEEDANDGL--VDRDEDEGVEREYTFPGEERTKGEVNENSAPDLQRRY------ 360 Query: 306 RQSIESVGTAAS 271 +++++ VG AS Sbjct: 361 QEAMQQVGKTAS 372
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 29.6 bits (65), Expect = 8.8 Identities = 18/50 (36%), Positives = 18/50 (36%) Frame = +2 Query: 248 PLVTSPFSDAAVPTLSIDCLLSMPPDCLLSMPSDCFLSMPPDCFLSMPPD 397 P TSP S S D PPD P D PPD PPD Sbjct: 241 PNTTSPESPDTTSPESPDTTSQEPPDTTSQEPPDTTSQEPPDTTSPEPPD 290
>ENGC_NITEU (Q82Y12) Probable GTPase engC (EC 3.6.1.-)| Length = 314 Score = 29.6 bits (65), Expect = 8.8 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 356 LSMPPDCFLSMPPDCLLSMPPDGFRSMLLIPEPDLIG 466 L++ P C L + CL++ G R ++L+ + DLIG Sbjct: 97 LAVVPSCNLELLDRCLVAAESQGIRPLILLNKIDLIG 133
>PDZK4_MOUSE (Q9QY39) PDZ domain-containing protein 4 (PDZ domain-containing| RING finger protein 4-like protein) Length = 772 Score = 29.6 bits (65), Expect = 8.8 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -3 Query: 522 NGGALITQCPSLLDAVSQLPI-RSGSGISNIDRKPSG 415 N G P L++ + + P+ RSG+G SN++R PSG Sbjct: 477 NTGESCRSTPLLVEPLPESPLKRSGAGNSNLNRTPSG 513 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,747,813 Number of Sequences: 219361 Number of extensions: 2221566 Number of successful extensions: 7960 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 7025 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7842 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
