ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19e24 |
|---|---|
| Clone Library Name | barley_pub |
>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 2) Length = 371 Score = 181 bits (458), Expect = 1e-45 Identities = 87/93 (93%), Positives = 89/93 (95%) Frame = -1 Query: 472 LGFENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEK 293 L FENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEK Sbjct: 279 LSFENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEK 338 Query: 292 SEGADVSAYGSSKVCTTQAPVQLGSLRAADGKE 194 +EG D+SAYGSSKV TQAPVQLGSLRAADGKE Sbjct: 339 AEGVDLSAYGSSKVVQTQAPVQLGSLRAADGKE 371
>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 1) (OsGME-1) Length = 378 Score = 171 bits (432), Expect = 1e-42 Identities = 78/93 (83%), Positives = 88/93 (94%) Frame = -1 Query: 472 LGFENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEK 293 L FE+++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTM+LKDGLR TYFWIKEQ+EKEK Sbjct: 286 LSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEK 345 Query: 292 SEGADVSAYGSSKVCTTQAPVQLGSLRAADGKE 194 ++G D++ YGSSKV +TQAPVQLGSLRAADGKE Sbjct: 346 TQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
>GME_ARATH (Q93VR3) GDP-mannose 3,5-epimerase (EC 5.1.3.18) (GDP-Man| 3,5-epimerase) Length = 377 Score = 168 bits (426), Expect = 6e-42 Identities = 80/93 (86%), Positives = 86/93 (92%) Frame = -1 Query: 472 LGFENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEK 293 L FE K+LPIHHIPGPEGVRGRNSDN LIKEKLGWAP MRLK+GLRITYFWIKEQ+EKEK Sbjct: 285 LSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEK 344 Query: 292 SEGADVSAYGSSKVCTTQAPVQLGSLRAADGKE 194 ++G+DVS YGSSKV TQAPVQLGSLRAADGKE Sbjct: 345 AKGSDVSLYGSSKVVGTQAPVQLGSLRAADGKE 377
>FCL2_ARATH (Q9LMU0) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) (AtGER2) Length = 328 Score = 35.4 bits (80), Expect = 0.074 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -1 Query: 427 PEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEK 293 P+G + D++ + LGW P + LKDGL TY W E + ++K Sbjct: 284 PDGTPRKLMDSSKLAS-LGWTPKISLKDGLSQTYEWYLENVVQKK 327
>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) Length = 328 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -1 Query: 427 PEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEK 293 P+G + D++ I+E +GW P + LK+GL TY W E + K Sbjct: 284 PDGTPRKLMDSSKIQE-MGWKPKVPLKEGLVETYKWYVENVISAK 327
>Y2889_PHOPR (Q6LN94) UPF0247 protein PBPRA2889| Length = 156 Score = 33.1 bits (74), Expect = 0.37 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Frame = -1 Query: 457 KQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF------W----IKEQ 308 K +P+ I P G RG+N+D I +K G A + G RI W + +Q Sbjct: 29 KDMPLELIEIPAGKRGKNADIARILQKEGEAMLATVAKGNRIVTLDIPGKRWDTGQLAQQ 88 Query: 307 LEKEKSEGADVS 272 L+ K +G DVS Sbjct: 89 LDSWKLDGRDVS 100
>Y1298_PHOLL (Q7N760) UPF0247 protein plu1298| Length = 156 Score = 32.7 bits (73), Expect = 0.48 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 10/72 (13%) Frame = -1 Query: 457 KQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF------W----IKEQ 308 K +P I P G RG+N+D I EK G + G RI W + +Q Sbjct: 29 KDMPFDLIEIPAGKRGKNADIKRILEKEGEQMLAAVSKGSRIVTLDIPGSRWETPQLAQQ 88 Query: 307 LEKEKSEGADVS 272 LE K +G DVS Sbjct: 89 LEHWKRDGRDVS 100
>MA1A2_HUMAN (O60476) Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB (EC| 3.2.1.113) (Processing alpha-1,2-mannosidase IB) (Alpha-1,2-mannosidase IB) (Mannosidase alpha class 1A member 2) Length = 641 Score = 32.3 bits (72), Expect = 0.63 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = -1 Query: 463 ENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTM--RLKDGLRITYFWIKEQLEKEKS 290 ENK LP IP G+RG + ++ I+EK M D R TY W +L Sbjct: 152 ENKPLPPVPIPNLVGIRGGDPEDNDIREKREKIKEMMKHAWDNYR-TYGWGHNELRPIAR 210 Query: 289 EGADVSAYGSSKVCTT 242 +G + +GSS++ T Sbjct: 211 KGHSPNIFGSSQMGAT 226
>FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) Length = 347 Score = 31.6 bits (70), Expect = 1.1 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Frame = -1 Query: 427 PEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITY-FWIKEQ 308 PEGV R D+ ++ KLGW P + L+DG++ Y F+++ + Sbjct: 300 PEGVARRVVDSGRMR-KLGWEPRVALRDGIQDLYRFYLRHE 339
>Y1304_ERWCT (Q6D7M1) UPF0247 protein ECA1304| Length = 156 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%) Frame = -1 Query: 457 KQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF------W----IKEQ 308 K +P + P G RG+N+D I E+ G + G RI W + +Q Sbjct: 29 KDMPFELLEIPAGKRGKNADIKRILEREGEQMLAAVGKGNRIVTLDIPGTRWETPHLAQQ 88 Query: 307 LEKEKSEGADVS 272 LE+ K +G DVS Sbjct: 89 LERWKQDGRDVS 100
>FCL1_ARATH (O49213) GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) (AtGER1) (AtFX) Length = 312 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -1 Query: 427 PEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFW 320 P+G + D++ + LGW P + L+DGL TY W Sbjct: 270 PDGTPRKLMDSSKLAS-LGWTPKVSLRDGLSQTYDW 304
>Y041_HAEI8 (Q4QPL1) UPF0247 protein NTHI0041| Length = 155 Score = 30.8 bits (68), Expect = 1.8 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%) Frame = -1 Query: 457 KQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF-----W----IKEQL 305 K +P I P G RG+N+D I E+ G A G +T W + EQL Sbjct: 29 KDMPFELIEIPAGKRGKNADIKRILEQEGKAMLAACGKGKVVTLDIPGKPWTTPQLAEQL 88 Query: 304 EKEKSEGADV 275 E K++G DV Sbjct: 89 EAWKNDGCDV 98
>STRE_STRGR (P29782) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 328 Score = 30.4 bits (67), Expect = 2.4 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 400 DNTLIKEKLGWAPTMRLKDGLRITYFW 320 D+T I+ +LG+AP + L DGL T W Sbjct: 283 DSTRIQRELGFAPAVDLADGLAATVAW 309
>Y033_HAEIN (P44470) UPF0247 protein HI0033| Length = 155 Score = 30.4 bits (67), Expect = 2.4 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%) Frame = -1 Query: 457 KQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF-----W----IKEQL 305 K +P I P G RG+N+D I E+ G A G +T W + EQL Sbjct: 29 KDMPFELIEIPAGKRGKNADIKRILEQEGKAMLAACGKGKVVTLDIPGKPWTTPQLAEQL 88 Query: 304 EKEKSEGADV 275 E K++G DV Sbjct: 89 EAWKNDGRDV 98
>CASP2_HUMAN (P42575) Caspase-2 precursor (EC 3.4.22.-) (CASP-2) (ICH-1| protease) (ICH-1L/1S) [Contains: Caspase-2 subunit p18; Caspase-2 subunit p13; Caspase-2 subunit p12] Length = 452 Score = 30.4 bits (67), Expect = 2.4 Identities = 28/102 (27%), Positives = 44/102 (43%) Frame = +2 Query: 161 QLISLPRXECSLLAICGAEGAKLDRCLRGADLG*SVCRHVCAFGFFLLQLLLDPKIRDPQ 340 +L S PR +L+ G K G D+ S + + + +L D ++ Q Sbjct: 193 RLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQ 252 Query: 341 PILQPHGWSPAKLLLDECVVRVTATDALGARDVVDGQLLVLE 466 LQ PA + D C+V + + GA VDG+LL L+ Sbjct: 253 EKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQ 294
>RMLB_STRMU (P95780) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 348 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -1 Query: 400 DNTLIKEKLGWAPTM-RLKDGLRITYFWIKEQLEKEKSEGADVSA 269 D+T ++E+LGW P ++GL T W E + K+E V A Sbjct: 294 DSTKLREELGWKPQFTNFEEGLEDTIKWYTEHEDWWKAEKEAVEA 338
>ESR1_ICTPU (Q9YHZ7) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 617 Score = 30.0 bits (66), Expect = 3.1 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 471 WASRTSSCPSTTSLAPRASVAVTLTT 394 WA R SS P+TT+ P + T TT Sbjct: 564 WADRVSSSPTTTATTPTTNTTTTTTT 589
>Y723_VIBPA (Q87RQ4) UPF0247 protein VP0723| Length = 156 Score = 29.6 bits (65), Expect = 4.1 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Frame = -1 Query: 451 LPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF------W----IKEQLE 302 +P+ + G RG+N+D I +K G A + G RI W + EQLE Sbjct: 31 MPLELVEISAGKRGKNADIARILQKEGEAMLAAVPKGNRIVTLDIPGKKWDTPQLAEQLE 90 Query: 301 KEKSEGADVS 272 K +G DVS Sbjct: 91 AWKLDGRDVS 100
>YQAK_BACSU (P45908) Hypothetical protein yqaK| Length = 284 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 376 LGWAPTMRLKDGLRITYFWIKEQLEKEKSE 287 +G+A L +G R T +W K Q+EK K + Sbjct: 158 IGYAAYFELINGFRKTVYWTKAQVEKHKKK 187
>Y907_VIBVY (Q7MN10) UPF0247 protein VV0907| Length = 156 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Frame = -1 Query: 451 LPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF------W----IKEQLE 302 +P+ I G RG+N+D I +K G A + G RI W + +QLE Sbjct: 31 MPLELIEITAGKRGKNADIARILQKEGEAMLAAIPKGNRIVTLDIPGKKWDTPELAQQLE 90 Query: 301 KEKSEGADVS 272 K +G DVS Sbjct: 91 AWKLDGRDVS 100
>Y749_VIBF1 (Q5E6V2) UPF0247 protein VF0749| Length = 156 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 10/72 (13%) Frame = -1 Query: 457 KQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF------W----IKEQ 308 K +P+ + G RG+N+D I +K G A + G RI W + EQ Sbjct: 29 KDMPLELVEITAGKRGKNADIARILQKEGEAMLAAVPKGNRIVTLDIPGKRWDTEQLAEQ 88 Query: 307 LEKEKSEGADVS 272 LE K + DVS Sbjct: 89 LEAWKLDARDVS 100
>Y277_VIBVU (Q8DFD8) UPF0247 protein VV1_0277| Length = 156 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Frame = -1 Query: 451 LPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF------W----IKEQLE 302 +P+ I G RG+N+D I +K G A + G RI W + +QLE Sbjct: 31 MPLELIEITAGKRGKNADIARILQKEGEAMLAAIPKGNRIVTLDIPGKKWDTPELAQQLE 90 Query: 301 KEKSEGADVS 272 K +G DVS Sbjct: 91 AWKLDGRDVS 100
>Y2605_YERPE (Q8ZDG3) UPF0247 protein YPO2605/y1179/YP1108| Length = 156 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 10/72 (13%) Frame = -1 Query: 457 KQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF------W----IKEQ 308 K +P P G RG+N+D I EK G + RI W + +Q Sbjct: 29 KDMPFELAEIPAGKRGKNADIKRILEKEGELMLAAVGKNNRIVTLDIPGTPWETPQLAQQ 88 Query: 307 LEKEKSEGADVS 272 LE+ K +G DVS Sbjct: 89 LERWKQDGRDVS 100
>Y1098_YERPS (Q66DE8) UPF0247 protein YPTB1098| Length = 156 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 10/72 (13%) Frame = -1 Query: 457 KQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF------W----IKEQ 308 K +P P G RG+N+D I EK G + RI W + +Q Sbjct: 29 KDMPFELAEIPAGKRGKNADIKRILEKEGELMLAAVGKNNRIVTLDIPGTPWETPQLAQQ 88 Query: 307 LEKEKSEGADVS 272 LE+ K +G DVS Sbjct: 89 LERWKQDGRDVS 100
>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 421 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -1 Query: 409 RNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKE 296 R D K LGW P + L++GL T + +++LE + Sbjct: 362 RKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKELEHQ 399
>PZRN3_HUMAN (Q9UPQ7) PDZ domain-containing RING finger protein 3 (Ligand of| Numb-protein X 3) (Semaphorin cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1066 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +3 Query: 321 QKYVILSPSFSLMVGAQPSFSLMSVLSELRPRTPSGPGMWW 443 Q Y+ L S + AQ SL+S+ +L TPS P M W Sbjct: 881 QSYMQLIQQKSAVEYAQSQMSLVSMCKDLSSPTPSEPRMEW 921
>MBL1_MOUSE (P39039) Mannose-binding protein A precursor (MBP-A)| (Mannan-binding protein) (Ra-reactive factor polysaccharide-binding component p28B polypeptide) (RaRF p28B) Length = 239 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = -1 Query: 433 PGPEGVRGRNSDNTLIKEKLG--WAPTMRLKDGLRIT 329 PGP+G +G + DN I+EKL A LK L++T Sbjct: 77 PGPKGQKGDHGDNRAIEEKLANMEAEIRILKSKLQLT 113
>Y1923_PASMU (Q9CJR9) UPF0247 protein PM1923| Length = 155 Score = 28.5 bits (62), Expect = 9.1 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 15/82 (18%) Frame = -1 Query: 472 LGFEN------KQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF---- 323 +GFE K++P I P G RG+N+D I E+ G A +T Sbjct: 18 MGFEEYQRRFPKEMPFELIEIPAGKRGKNADIKRILEQEGKAMLAACGKSRIVTLDIPGK 77 Query: 322 -WIKE----QLEKEKSEGADVS 272 W E QLE K++G D+S Sbjct: 78 PWTTEQLATQLEVWKNDGRDLS 99
>Y1833_MANSM (Q65RH0) UPF0247 protein MS1833| Length = 155 Score = 28.5 bits (62), Expect = 9.1 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 15/81 (18%) Frame = -1 Query: 472 LGFEN------KQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYF---- 323 +GFE K +P I P G RG+N+D I E+ G A G +T Sbjct: 18 VGFEEYQRRFPKDMPFELIEIPAGKRGKNADIKRILEQEGKAMLSACGRGKVVTLDIPGK 77 Query: 322 -W----IKEQLEKEKSEGADV 275 W + QLE K++G D+ Sbjct: 78 PWTTDQLARQLESWKNDGRDI 98
>NOLK_AZOCA (P33217) Nodulation protein nolK| Length = 312 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -1 Query: 445 IHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITY 326 ++ + P G+R + D T + LGW P L+ G+R TY Sbjct: 263 VYDLNRPVGMRSKLMDITHLTA-LGWVPERSLEGGIRSTY 301
>CASP2_RAT (P55215) Caspase-2 precursor (EC 3.4.22.-) (CASP-2) (ICH-1| protease) [Contains: Caspase-2 subunit p18; Caspase-2 subunit p13; Caspase-2 subunit p12] Length = 452 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +2 Query: 302 LQLLLDPKIRDPQPILQPHGWSPAKLLLDECVVRVTATDALGARDVVDGQLLVLE 466 + +L D ++ Q LQ PA + D C+V + + G VDG+LL L+ Sbjct: 240 VHVLYDQTAQEMQEKLQNFAQLPAHRVTDSCIVALLSHGVEGGIYGVDGKLLQLQ 294 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,520,137 Number of Sequences: 219361 Number of extensions: 1264598 Number of successful extensions: 3582 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3483 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3579 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
