ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18p17 |
|---|---|
| Clone Library Name | barley_pub |
>YA9A_SCHPO (Q09788) Hypothetical serine-rich protein C13G6.10c precursor| Length = 530 Score = 35.8 bits (81), Expect = 0.12 Identities = 30/99 (30%), Positives = 47/99 (47%) Frame = +1 Query: 343 YRRSHWTRPFW*ITGLSPISCASGHAWTAKSQFPPQRPATH*KSRATGPSSSR*TTELPA 522 Y + T P W T + P+S A T+ S+F PAT +S ++ P+SS T + Sbjct: 116 YTMDNVTAPVWSNTSV-PVSTPETSA-TSSSEFFTSYPATSSESSSSYPASS--TEVASS 171 Query: 523 MSCASEHTSAT*PLLSRAQTSTSRSAVRMQSAAAVPSSV 639 S +S +++ P S TSTS + S+ A S + Sbjct: 172 YSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEI 210
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 34.7 bits (78), Expect = 0.27 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Frame = +1 Query: 382 TGLSPISCASGHAWTAKSQFPPQRPATH*KSRATGPSSSR*TTELPAMSCASEHTSAT*P 561 T SP S ++ + T+ S +T S +T PSS+ ++ L + S +S TS + Sbjct: 196 TSTSPSSTSTSSSSTSTSS---SSTSTSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQSST 252 Query: 562 LLSRAQTSTSRSAVRMQSA--AAVPSSVCGTLTALSTMS 672 S + TSTS S+ S+ + PSS + ++ ST S Sbjct: 253 STSSSSTSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSS 291 Score = 33.5 bits (75), Expect = 0.60 Identities = 29/95 (30%), Positives = 44/95 (46%) Frame = +1 Query: 382 TGLSPISCASGHAWTAKSQFPPQRPATH*KSRATGPSSSR*TTELPAMSCASEHTSAT*P 561 T LS S + T+ S +T S +T SSS +T + S +S TS + Sbjct: 184 TSLSSTSTSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSS 243 Query: 562 LLSRAQTSTSRSAVRMQSAAAVPSSVCGTLTALST 666 S +Q+STS S+ S + PSS + ++ ST Sbjct: 244 STSTSQSSTSTSS---SSTSTSPSSTSTSSSSTST 275 Score = 30.8 bits (68), Expect = 3.9 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%) Frame = +1 Query: 382 TGLSPISCASGHAWTAKSQFPPQRPATH*KSRATGPSS-----SR*TTELPAMSCASEHT 546 T S S ++ + T+ S P +T S +T PSS S +T + S + T Sbjct: 245 TSTSQSSTSTSSSSTSTS---PSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLT 301 Query: 547 SAT*PLLSRAQTSTSRSAVRMQSAAAVPSSVCGTLTALSTMS 672 S++ L S + +STS S+ S +++ SS+ + T++S S Sbjct: 302 SSSPTLASTSPSSTSISSTFTDSTSSLGSSIASSSTSVSLYS 343
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 32.0 bits (71), Expect = 1.7 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%) Frame = +1 Query: 373 W*ITGLSPISCASGHAWTAKSQFPPQRPATH*KSRA-TGPSSSR*TTELPAMSCASEHTS 549 W +T L+ + A+ A T + P P T + T P+++ T A S +S T+ Sbjct: 4190 WILTELT--TTATTTASTGSTATPSSTPGTAPPPKVLTSPATTPTATSSKATSSSSPRTA 4247 Query: 550 AT*PLLSRAQTSTSRSAVRMQSAAAVPSSVCGTLTAL 660 T P+L+ T ++ ++V +PSS GT L Sbjct: 4248 TTLPVLTSTATKSTATSV-----TPIPSSTLGTTGTL 4279
>SALM_DROME (P39770) Homeotic protein spalt-major| Length = 1365 Score = 32.0 bits (71), Expect = 1.7 Identities = 25/80 (31%), Positives = 35/80 (43%) Frame = +1 Query: 394 PISCASGHAWTAKSQFPPQRPATH*KSRATGPSSSR*TTELPAMSCASEHTSAT*PLLSR 573 P S AS H + S P P+ H S+ SSS PA S AS+ P + Sbjct: 1038 PRSSASSHGHSVGSTSAPTSPSVHASSQVIKRSSS------PARSEASQGALDLTPRAAP 1091 Query: 574 AQTSTSRSAVRMQSAAAVPS 633 +S+SRS + + + PS Sbjct: 1092 TSSSSSRSPLPKEKPVSPPS 1111
>VCAP_HHV11 (P06491) Major capsid protein (MCP) (Capsid protein VP5)| Length = 1374 Score = 32.0 bits (71), Expect = 1.7 Identities = 27/89 (30%), Positives = 38/89 (42%) Frame = +3 Query: 300 QGRLLDRQRVTEERLPEKPLDETVLVDNWVIAYKLCFRACMDGKVPVSSTETGNPLKEPR 479 Q LD R T + L P V D I KL F ++ ++ ++T PL Sbjct: 340 QEEQLDLNRQTLDELESAPQTTRVRADLVSIGEKLVFLEALEKRI-YAATNVPYPLVGAM 398 Query: 480 DWAFIIKVDNRVAGHELRF*AHVGDMTPA 566 D F++ + E RF AH GD+ PA Sbjct: 399 DLTFVLPLGLFNPVME-RFAAHAGDLVPA 426
>CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (Complement C3d| receptor) (CD21 antigen) Length = 1025 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = -3 Query: 530 QLMAGNSVVYLDDEGPVARLFQWVAGLCGGNWDFAVHACPEAQLIGDNPVIYQNGLVQ 357 Q +AG SV Y + G + + + L G+WD + C EAQ ++P + NG V+ Sbjct: 164 QFVAGLSVTYSCEPGYLLTGKKTIKCLSSGDWDGVIPTCKEAQC--EHPGKFPNGQVK 219
>AMIA2_MYCTU (P63490) Putative amidase amiA2 (EC 3.5.1.4)| Length = 484 Score = 31.2 bits (69), Expect = 3.0 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -1 Query: 625 LPPPTACAPPIEKSTFALARAGVMSPTCAQKRSSWPATLLSTLMMKAQSRGSFNGLPVSV 446 L P TA PP+ ++ L G A S+WP LL + + + +GLP+ V Sbjct: 389 LAPTTAQPPPMARAFDRLGSFGTDRAIIAACPSTWPWNLLGWPSINVPAGFTSDGLPIGV 448 Query: 445 EETG 434 + G Sbjct: 449 QLMG 452
>AMIA2_MYCBO (P63491) Putative amidase amiA2 (EC 3.5.1.4)| Length = 484 Score = 31.2 bits (69), Expect = 3.0 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -1 Query: 625 LPPPTACAPPIEKSTFALARAGVMSPTCAQKRSSWPATLLSTLMMKAQSRGSFNGLPVSV 446 L P TA PP+ ++ L G A S+WP LL + + + +GLP+ V Sbjct: 389 LAPTTAQPPPMARAFDRLGSFGTDRAIIAACPSTWPWNLLGWPSINVPAGFTSDGLPIGV 448 Query: 445 EETG 434 + G Sbjct: 449 QLMG 452
>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3703 Score = 30.4 bits (67), Expect = 5.1 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = -1 Query: 622 PPPTACAPPIEKSTFALARAG--VMSPTCAQKRSSWPATLLSTLM 494 PPP APP ST A+ + + SPT A + S P T LS M Sbjct: 2048 PPPLPAAPPQPASTPAIPASAPPITSPTIAPAQPSVPLTQLSMPM 2092
>PIV6_ADE40 (P48309) Minor capsid protein 6 precursor (Minor capsid protein VI)| [Contains: Protease cofactor] Length = 267 Score = 30.0 bits (66), Expect = 6.6 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = -1 Query: 634 TRELPPPTACAPPIEKSTFALARAGVMSPTCA-------QKRSSWPATLLSTLMMKAQS 479 T ELPPP PP+ T A + +PT A + ++W +TL S + + +S Sbjct: 202 TLELPPPVPTVPPMPAPTLGTAVSRPTAPTVAVATPARRPRGANWQSTLNSIVGLGVKS 260
>DDX11_MOUSE (Q6AXC6) Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-)| (DEAD/H box protein 11) Length = 880 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Frame = +3 Query: 288 PHFEQGRLLDRQRVTEERLPE---KPLDETVLVDNWVIAYKLCFRACMDGKVPVSSTETG 458 P+ + L ++ + LP +PL TVL++N LC +A + G Sbjct: 773 PNIKSPELQEKMAYLNQTLPRTQGQPLPGTVLIEN------LCMKAI--------NQSIG 818 Query: 459 NPLKEPRDWAFIIKVDNRVA 518 ++ RD+A I+ +D+R A Sbjct: 819 RAIRHQRDFASIVLLDHRYA 838
>YN95_YEAST (P53752) Putative 49.7 kDa membrane glycoprotein in BIO3-HXT17| intergenic region Length = 436 Score = 29.6 bits (65), Expect = 8.7 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +3 Query: 246 WTSNPNCDFFDIYKPHFEQGRLL 314 WT NP+ + DI PHF +G ++ Sbjct: 346 WTINPHFGYIDIASPHFLEGTII 368 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,733,693 Number of Sequences: 219361 Number of extensions: 2289291 Number of successful extensions: 6940 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 6626 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6930 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
