ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18p12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476340.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2071 Score = 297 bits (150), Expect = 3e-77 Identities = 270/310 (87%) Strand = Plus / Minus Query: 440 tttcaggcacatcagtaaggactgcagggagaatgttgaccagctgggggttgctagatg 499 |||||||||| |||||||||||||||||||||||||| ||||||||||| || || | | Sbjct: 1433 tttcaggcacgtcagtaaggactgcagggagaatgttcaccagctggggattacttgcag 1374 Query: 500 gtggtgtcgaagctataagcctcattagtgtttccctagcactcctctcaaccaacgatt 559 |||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 1373 atggtgttgaggctataagcctcattagtgtttccctagcgcttctctcaaccaaagatt 1314 Query: 560 cggtttctggaatcagaggcttcaagctagggagcaggggaacagctgaaattatagaag 619 | |||||||||||||| |||||||||||||||||||||| ||||| | | ||||||| Sbjct: 1313 ctgtttctggaatcaggggcttcaagctagggagcagggtaacagtcgcagacatagaag 1254 Query: 620 gaccacaactcaccaaataagcctgaccagaggaacacatatcgatgactgggacatgca 679 | || |||||||||| |||||||| ||||||||||||| ||| ||||| |||||||||| Sbjct: 1253 gcccgcaactcaccaggtaagcctggccagaggaacacacatcaatgaccgggacatgca 1194 Query: 680 caataggatcagacatcaatggtgtaaatgttgaaacctgtgagctatgcaatgaaacaa 739 |||| || ||||||||||||||||| ||||||| ||| ||||| | |||||| || |||| Sbjct: 1193 caatggggtcagacatcaatggtgtgaatgttggaacttgtgaaccatgcaaggatacaa 1134 Query: 740 atggtgaagt 749 ||||||||| Sbjct: 1133 gtggtgaagt 1124
>ref|XM_506126.1| PREDICTED Oryza sativa (japonica cultivar-group), B1026C12.9 mRNA Length = 2333 Score = 297 bits (150), Expect = 3e-77 Identities = 270/310 (87%) Strand = Plus / Minus Query: 440 tttcaggcacatcagtaaggactgcagggagaatgttgaccagctgggggttgctagatg 499 |||||||||| |||||||||||||||||||||||||| ||||||||||| || || | | Sbjct: 1926 tttcaggcacgtcagtaaggactgcagggagaatgttcaccagctggggattacttgcag 1867 Query: 500 gtggtgtcgaagctataagcctcattagtgtttccctagcactcctctcaaccaacgatt 559 |||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 1866 atggtgttgaggctataagcctcattagtgtttccctagcgcttctctcaaccaaagatt 1807 Query: 560 cggtttctggaatcagaggcttcaagctagggagcaggggaacagctgaaattatagaag 619 | |||||||||||||| |||||||||||||||||||||| ||||| | | ||||||| Sbjct: 1806 ctgtttctggaatcaggggcttcaagctagggagcagggtaacagtcgcagacatagaag 1747 Query: 620 gaccacaactcaccaaataagcctgaccagaggaacacatatcgatgactgggacatgca 679 | || |||||||||| |||||||| ||||||||||||| ||| ||||| |||||||||| Sbjct: 1746 gcccgcaactcaccaggtaagcctggccagaggaacacacatcaatgaccgggacatgca 1687 Query: 680 caataggatcagacatcaatggtgtaaatgttgaaacctgtgagctatgcaatgaaacaa 739 |||| || ||||||||||||||||| ||||||| ||| ||||| | |||||| || |||| Sbjct: 1686 caatggggtcagacatcaatggtgtgaatgttggaacttgtgaaccatgcaaggatacaa 1627 Query: 740 atggtgaagt 749 ||||||||| Sbjct: 1626 gtggtgaagt 1617
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 297 bits (150), Expect = 3e-77 Identities = 270/310 (87%) Strand = Plus / Minus Query: 440 tttcaggcacatcagtaaggactgcagggagaatgttgaccagctgggggttgctagatg 499 |||||||||| |||||||||||||||||||||||||| ||||||||||| || || | | Sbjct: 40573 tttcaggcacgtcagtaaggactgcagggagaatgttcaccagctggggattacttgcag 40514 Query: 500 gtggtgtcgaagctataagcctcattagtgtttccctagcactcctctcaaccaacgatt 559 |||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 40513 atggtgttgaggctataagcctcattagtgtttccctagcgcttctctcaaccaaagatt 40454 Query: 560 cggtttctggaatcagaggcttcaagctagggagcaggggaacagctgaaattatagaag 619 | |||||||||||||| |||||||||||||||||||||| ||||| | | ||||||| Sbjct: 40453 ctgtttctggaatcaggggcttcaagctagggagcagggtaacagtcgcagacatagaag 40394 Query: 620 gaccacaactcaccaaataagcctgaccagaggaacacatatcgatgactgggacatgca 679 | || |||||||||| |||||||| ||||||||||||| ||| ||||| |||||||||| Sbjct: 40393 gcccgcaactcaccaggtaagcctggccagaggaacacacatcaatgaccgggacatgca 40334 Query: 680 caataggatcagacatcaatggtgtaaatgttgaaacctgtgagctatgcaatgaaacaa 739 |||| || ||||||||||||||||| ||||||| ||| ||||| | |||||| || |||| Sbjct: 40333 caatggggtcagacatcaatggtgtgaatgttggaacttgtgaaccatgcaaggatacaa 40274 Query: 740 atggtgaagt 749 ||||||||| Sbjct: 40273 gtggtgaagt 40264
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 297 bits (150), Expect = 3e-77 Identities = 270/310 (87%) Strand = Plus / Minus Query: 440 tttcaggcacatcagtaaggactgcagggagaatgttgaccagctgggggttgctagatg 499 |||||||||| |||||||||||||||||||||||||| ||||||||||| || || | | Sbjct: 39872 tttcaggcacgtcagtaaggactgcagggagaatgttcaccagctggggattacttgcag 39813 Query: 500 gtggtgtcgaagctataagcctcattagtgtttccctagcactcctctcaaccaacgatt 559 |||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 39812 atggtgttgaggctataagcctcattagtgtttccctagcgcttctctcaaccaaagatt 39753 Query: 560 cggtttctggaatcagaggcttcaagctagggagcaggggaacagctgaaattatagaag 619 | |||||||||||||| |||||||||||||||||||||| ||||| | | ||||||| Sbjct: 39752 ctgtttctggaatcaggggcttcaagctagggagcagggtaacagtcgcagacatagaag 39693 Query: 620 gaccacaactcaccaaataagcctgaccagaggaacacatatcgatgactgggacatgca 679 | || |||||||||| |||||||| ||||||||||||| ||| ||||| |||||||||| Sbjct: 39692 gcccgcaactcaccaggtaagcctggccagaggaacacacatcaatgaccgggacatgca 39633 Query: 680 caataggatcagacatcaatggtgtaaatgttgaaacctgtgagctatgcaatgaaacaa 739 |||| || ||||||||||||||||| ||||||| ||| ||||| | |||||| || |||| Sbjct: 39632 caatggggtcagacatcaatggtgtgaatgttggaacttgtgaaccatgcaaggatacaa 39573 Query: 740 atggtgaagt 749 ||||||||| Sbjct: 39572 gtggtgaagt 39563
>dbj|AK103198.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A05, full insert sequence Length = 2625 Score = 297 bits (150), Expect = 3e-77 Identities = 270/310 (87%) Strand = Plus / Minus Query: 440 tttcaggcacatcagtaaggactgcagggagaatgttgaccagctgggggttgctagatg 499 |||||||||| |||||||||||||||||||||||||| ||||||||||| || || | | Sbjct: 2199 tttcaggcacgtcagtaaggactgcagggagaatgttcaccagctggggattacttgcag 2140 Query: 500 gtggtgtcgaagctataagcctcattagtgtttccctagcactcctctcaaccaacgatt 559 |||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 2139 atggtgttgaggctataagcctcattagtgtttccctagcgcttctctcaaccaaagatt 2080 Query: 560 cggtttctggaatcagaggcttcaagctagggagcaggggaacagctgaaattatagaag 619 | |||||||||||||| |||||||||||||||||||||| ||||| | | ||||||| Sbjct: 2079 ctgtttctggaatcaggggcttcaagctagggagcagggtaacagtcgcagacatagaag 2020 Query: 620 gaccacaactcaccaaataagcctgaccagaggaacacatatcgatgactgggacatgca 679 | || |||||||||| |||||||| ||||||||||||| ||| ||||| |||||||||| Sbjct: 2019 gcccgcaactcaccaggtaagcctggccagaggaacacacatcaatgaccgggacatgca 1960 Query: 680 caataggatcagacatcaatggtgtaaatgttgaaacctgtgagctatgcaatgaaacaa 739 |||| || ||||||||||||||||| ||||||| ||| ||||| | |||||| || |||| Sbjct: 1959 caatggggtcagacatcaatggtgtgaatgttggaacttgtgaaccatgcaaggatacaa 1900 Query: 740 atggtgaagt 749 ||||||||| Sbjct: 1899 gtggtgaagt 1890
>dbj|AK067928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128H10, full insert sequence Length = 2333 Score = 297 bits (150), Expect = 3e-77 Identities = 270/310 (87%) Strand = Plus / Minus Query: 440 tttcaggcacatcagtaaggactgcagggagaatgttgaccagctgggggttgctagatg 499 |||||||||| |||||||||||||||||||||||||| ||||||||||| || || | | Sbjct: 1925 tttcaggcacgtcagtaaggactgcagggagaatgttcaccagctggggattacttgcag 1866 Query: 500 gtggtgtcgaagctataagcctcattagtgtttccctagcactcctctcaaccaacgatt 559 |||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 1865 atggtgttgaggctataagcctcattagtgtttccctagcgcttctctcaaccaaagatt 1806 Query: 560 cggtttctggaatcagaggcttcaagctagggagcaggggaacagctgaaattatagaag 619 | |||||||||||||| |||||||||||||||||||||| ||||| | | ||||||| Sbjct: 1805 ctgtttctggaatcaggggcttcaagctagggagcagggtaacagtcgcagacatagaag 1746 Query: 620 gaccacaactcaccaaataagcctgaccagaggaacacatatcgatgactgggacatgca 679 | || |||||||||| |||||||| ||||||||||||| ||| ||||| |||||||||| Sbjct: 1745 gcccgcaactcaccaggtaagcctggccagaggaacacacatcaatgaccgggacatgca 1686 Query: 680 caataggatcagacatcaatggtgtaaatgttgaaacctgtgagctatgcaatgaaacaa 739 |||| || ||||||||||||||||| ||||||| ||| ||||| | |||||| || |||| Sbjct: 1685 caatggggtcagacatcaatggtgtgaatgttggaacttgtgaaccatgcaaggatacaa 1626 Query: 740 atggtgaagt 749 ||||||||| Sbjct: 1625 gtggtgaagt 1616
>dbj|AK066470.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066L17, full insert sequence Length = 2071 Score = 297 bits (150), Expect = 3e-77 Identities = 270/310 (87%) Strand = Plus / Minus Query: 440 tttcaggcacatcagtaaggactgcagggagaatgttgaccagctgggggttgctagatg 499 |||||||||| |||||||||||||||||||||||||| ||||||||||| || || | | Sbjct: 1433 tttcaggcacgtcagtaaggactgcagggagaatgttcaccagctggggattacttgcag 1374 Query: 500 gtggtgtcgaagctataagcctcattagtgtttccctagcactcctctcaaccaacgatt 559 |||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 1373 atggtgttgaggctataagcctcattagtgtttccctagcgcttctctcaaccaaagatt 1314 Query: 560 cggtttctggaatcagaggcttcaagctagggagcaggggaacagctgaaattatagaag 619 | |||||||||||||| |||||||||||||||||||||| ||||| | | ||||||| Sbjct: 1313 ctgtttctggaatcaggggcttcaagctagggagcagggtaacagtcgcagacatagaag 1254 Query: 620 gaccacaactcaccaaataagcctgaccagaggaacacatatcgatgactgggacatgca 679 | || |||||||||| |||||||| ||||||||||||| ||| ||||| |||||||||| Sbjct: 1253 gcccgcaactcaccaggtaagcctggccagaggaacacacatcaatgaccgggacatgca 1194 Query: 680 caataggatcagacatcaatggtgtaaatgttgaaacctgtgagctatgcaatgaaacaa 739 |||| || ||||||||||||||||| ||||||| ||| ||||| | |||||| || |||| Sbjct: 1193 caatggggtcagacatcaatggtgtgaatgttggaacttgtgaaccatgcaaggatacaa 1134 Query: 740 atggtgaagt 749 ||||||||| Sbjct: 1133 gtggtgaagt 1124
>dbj|AK101821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067G13, full insert sequence Length = 2879 Score = 289 bits (146), Expect = 7e-75 Identities = 269/310 (86%) Strand = Plus / Minus Query: 440 tttcaggcacatcagtaaggactgcagggagaatgttgaccagctgggggttgctagatg 499 |||||||||| |||||||||||||||||||||||||| ||||||||||| || || | | Sbjct: 2463 tttcaggcacgtcagtaaggactgcagggagaatgttcaccagctggggattacttgcag 2404 Query: 500 gtggtgtcgaagctataagcctcattagtgtttccctagcactcctctcaaccaacgatt 559 |||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 2403 atggtgttgaggctataagcctcattagtgtttccctagcgcttctctcaaccaaagatt 2344 Query: 560 cggtttctggaatcagaggcttcaagctagggagcaggggaacagctgaaattatagaag 619 | |||||||||||||| |||||||||||||||||||||| ||||| | | ||||||| Sbjct: 2343 ctgtttctggaatcaggggcttcaagctagggagcagggtaacagtcgcagacatagaag 2284 Query: 620 gaccacaactcaccaaataagcctgaccagaggaacacatatcgatgactgggacatgca 679 | || |||||||||| |||||||| ||||||||||||| ||| ||||| |||||||||| Sbjct: 2283 gcccgcaactcaccaggtaagcctggccagaggaacacacatcaatgaccgggacatgca 2224 Query: 680 caataggatcagacatcaatggtgtaaatgttgaaacctgtgagctatgcaatgaaacaa 739 |||| || ||||||||||||||||| || |||| ||| ||||| | |||||| || |||| Sbjct: 2223 caatggggtcagacatcaatggtgtgaaagttggaacttgtgaaccatgcaaggatacaa 2164 Query: 740 atggtgaagt 749 ||||||||| Sbjct: 2163 gtggtgaagt 2154
>gb|BT018172.1| Zea mays clone EL01N0557B07.c mRNA sequence Length = 829 Score = 202 bits (102), Expect = 1e-48 Identities = 186/214 (86%) Strand = Plus / Minus Query: 499 ggtggtgtcgaagctataagcctcattagtgtttccctagcactcctctcaaccaacgat 558 ||||||||||||||||| |||||||| ||||||||||| || || ||||| || ||||| Sbjct: 264 ggtggtgtcgaagctatgagcctcatcagtgtttcccttgcgcttctctcgactaacgac 205 Query: 559 tcggtttctggaatcagaggcttcaagctagggagcaggggaacagctgaaattatagaa 618 || | |||||| | ||||||||||||||| |||||||||||||| |||||| ||||||| Sbjct: 204 tctgcttctggcagcagaggcttcaagctcgggagcaggggaactgctgaagttatagac 145 Query: 619 ggaccacaactcaccaaataagcctgaccagaggaacacatatcgatgactgggacatgc 678 |||||||||||||| | ||| |||||||| | ||||| | ||| ||||||||||||||| Sbjct: 144 ggaccacaactcactagataggcctgacccgccgaacaaacatcaatgactgggacatgc 85 Query: 679 acaataggatcagacatcaatggtgtaaatgttg 712 ||||| ||||| |||||||||||||| ||||||| Sbjct: 84 acaatgggatcggacatcaatggtgtgaatgttg 51
>gb|AY108059.1| Zea mays PCO087020 mRNA sequence Length = 546 Score = 54.0 bits (27), Expect = 7e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 499 ggtggtgtcgaagctataagcctcattagtgtttc 533 ||||||||||||||||| |||||||| |||||||| Sbjct: 47 ggtggtgtcgaagctatgagcctcatcagtgtttc 13
>gb|AC140395.2| Mus musculus BAC clone RP24-183G4 from chromosome 6, complete sequence Length = 183546 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Plus Query: 55 atcagccatttagctgggcagaag 78 |||||||||||||||||||||||| Sbjct: 49808 atcagccatttagctgggcagaag 49831
>gb|AC136457.3| Mus musculus BAC clone RP23-76G19 from chromosome 13, complete sequence Length = 204369 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 ctaattacatttaccaaccaca 55 |||||||||||||||||||||| Sbjct: 115759 ctaattacatttaccaaccaca 115738
>gb|AC079199.9| Homo sapiens chromosome 17, clone RP11-94L15, complete sequence Length = 161815 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 693 catcaatggtgtaaatgttgaaacc 717 ||||||||||||||||||| ||||| Sbjct: 138770 catcaatggtgtaaatgttaaaacc 138794
>gb|AC083905.20| Homo sapiens 3 BAC RP11-124N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109471 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 295 tgcccactggaaacctcatcctccg 319 |||||||||||| |||||||||||| Sbjct: 48283 tgcccactggaagcctcatcctccg 48259
>gb|AC112917.3| Homo sapiens X BAC RP11-46C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 134089 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 ttcaaaatattcagacatttc 174 ||||||||||||||||||||| Sbjct: 17300 ttcaaaatattcagacatttc 17320
>emb|CR860941.1| Pongo pygmaeus mRNA; cDNA DKFZp469L1231 (from clone DKFZp469L1231) Length = 2353 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 326 gctccatggctgccatcccacttcc 350 ||||||||||||||||| ||||||| Sbjct: 2093 gctccatggctgccatctcacttcc 2117
>gb|AC017032.3|AC017032 Homo sapiens BAC clone RP11-292E8 from Y, complete sequence Length = 45123 Score = 42.1 bits (21), Expect = 2.6 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 684 aggatcagacatcaatggtgtaaatgttgaaac 716 |||||||||||| |||||| ||||||||||||| Sbjct: 19632 aggatcagacatgaatggt-taaatgttgaaac 19601
>emb|AJ331952.1|HSA331952 Homo sapiens genomic sequence surrounding NotI site, clone NR1-DL18C Length = 816 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 424 ggagatcgagaaatattttca 444 ||||||||||||||||||||| Sbjct: 532 ggagatcgagaaatattttca 552 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,087,735 Number of Sequences: 3902068 Number of extensions: 7087735 Number of successful extensions: 128787 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 128672 Number of HSP's gapped (non-prelim): 108 length of query: 749 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 726 effective length of database: 17,143,297,704 effective search space: 12446034133104 effective search space used: 12446034133104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
