ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome... 198 6e-48
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 198 6e-48
3dbj|AK119884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 6e-48
4dbj|AK066599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 6e-48
5ref|XM_475816.1| Oryza sativa (japonica cultivar-group), predic... 196 2e-47
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 159 5e-36
7dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic D... 159 5e-36
8dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic D... 159 5e-36
9dbj|AK062099.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 5e-36
10ref|XM_468444.1| Oryza sativa (japonica cultivar-group), mRNA 157 2e-35
11gb|BT017752.1| Zea mays clone EL01N0450E02.c mRNA sequence 147 2e-32
12gb|BT017240.1| Zea mays clone EL01N0305E06.c mRNA sequence 147 2e-32
13ref|NM_191653.1| Oryza sativa (japonica cultivar-group), predic... 143 3e-31
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 143 3e-31
15dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic D... 143 3e-31
16dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic D... 143 3e-31
17gb|BT016863.1| Zea mays clone Contig696 mRNA sequence 135 7e-29
18gb|AY103648.1| Zea mays PCO068622 mRNA sequence 135 7e-29
19gb|AF457940.1| Zea mays clone cho1c.pk002.j11, mRNA sequence 103 3e-19
20gb|BT013039.1| Lycopersicon esculentum clone 114289R, mRNA sequence 64 2e-07
21gb|DQ200370.1| Solanum tuberosum clone 057E05 unknown mRNA 44 0.21
22gb|DQ200369.1| Solanum tuberosum clone 057D08 unknown mRNA 44 0.21
23ref|NM_119086.3| Arabidopsis thaliana structural constituent of ... 42 0.83
24gb|AC115122.4| Mus musculus BAC clone RP24-108L20 from chromosom... 42 0.83
25gb|AY829771.1| Lonomia obliqua ribosomal protein 14 mRNA, comple... 42 0.83
26gb|AC132807.3| Homo sapiens chromosome 3 clone RP11-147G2, compl... 42 0.83
27gb|BT000047.1| Arabidopsis thaliana putative protein (At4g29410)... 42 0.83
28emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, ... 42 0.83
29emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, ... 42 0.83
30gb|AC104297.1| Homo sapiens chromosome 3 clone RP11-8D23, comple... 42 0.83
31gb|AY072328.1| Arabidopsis thaliana putative protein (At4g29410)... 42 0.83
32emb|BX829363.1|CNS0A3JN Arabidopsis thaliana Full-length cDNA Co... 42 0.83
33emb|BX828625.1|CNS0A2F6 Arabidopsis thaliana Full-length cDNA Co... 42 0.83
34gb|AY088304.1| Arabidopsis thaliana clone 5426 mRNA, complete se... 42 0.83
35gb|AC148978.3| Mus musculus BAC clone RP23-359K8 from 14, comple... 42 0.83
36gb|AC123824.4| Mus musculus BAC clone RP24-84D16 from chromosome... 40 3.3
37gb|AC159983.8| Mus musculus BAC clone RP23-192C23 from chromosom... 40 3.3
38emb|AL161774.49| Human DNA sequence from clone RP11-245B11 on ch... 40 3.3
39emb|AL034380.26|HS50O24 Human DNA sequence from clone RP1-50O24 ... 40 3.3
40gb|AC091782.5| Genomic sequence for Mus musculus, clone RP23-103... 40 3.3
41gb|AC018499.3| Homo sapiens chromosome 3 clone RP11-267L16 map 3... 40 3.3
42gb|AC018839.5| Homo sapiens chromosome 3 clone RP11-593J10 map 3... 40 3.3
43gb|AC018502.6| Homo sapiens chromosome 3 clone RP11-327H17 map 3... 40 3.3 
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11,
             complete sequence
          Length = 115808

 Score =  198 bits (100), Expect = 6e-48
 Identities = 118/124 (95%)
 Strand = Plus / Plus

                                                                         
Query: 129   tttacagcttagttggctgcctgttcttcttcttgaccccagacttggaaacctggaggc 188
             ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 76463 tttacagcttagttggctgcctgttcttcttcttggcaccagacttggaaacctggaggc 76522

                                                                         
Query: 189   tgcggtacactgcgctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagt 248
             |||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 76523 tgcggtacactgagctaagcctcgcaagagccggcttggtcaggtcaggcctgtagtagt 76582

                 
Query: 249   tgtc 252
             ||||
Sbjct: 76583 tgtc 76586
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  198 bits (100), Expect = 6e-48
 Identities = 118/124 (95%)
 Strand = Plus / Plus

                                                                            
Query: 129      tttacagcttagttggctgcctgttcttcttcttgaccccagacttggaaacctggaggc 188
                ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 26695466 tttacagcttagttggctgcctgttcttcttcttggcaccagacttggaaacctggaggc 26695525

                                                                            
Query: 189      tgcggtacactgcgctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagt 248
                |||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 26695526 tgcggtacactgagctaagcctcgcaagagccggcttggtcaggtcaggcctgtagtagt 26695585

                    
Query: 249      tgtc 252
                ||||
Sbjct: 26695586 tgtc 26695589
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>dbj|AK119884.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-G12, full
            insert sequence
          Length = 2472

 Score =  198 bits (100), Expect = 6e-48
 Identities = 118/124 (95%)
 Strand = Plus / Minus

                                                                        
Query: 129  tttacagcttagttggctgcctgttcttcttcttgaccccagacttggaaacctggaggc 188
            ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 2255 tttacagcttagttggctgcctgttcttcttcttggcaccagacttggaaacctggaggc 2196

                                                                        
Query: 189  tgcggtacactgcgctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagt 248
            |||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 2195 tgcggtacactgagctaagcctcgcaagagccggcttggtcaggtcaggcctgtagtagt 2136

                
Query: 249  tgtc 252
            ||||
Sbjct: 2135 tgtc 2132
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>dbj|AK066599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069H24, full
            insert sequence
          Length = 2403

 Score =  198 bits (100), Expect = 6e-48
 Identities = 118/124 (95%)
 Strand = Plus / Minus

                                                                        
Query: 129  tttacagcttagttggctgcctgttcttcttcttgaccccagacttggaaacctggaggc 188
            ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 2159 tttacagcttagttggctgcctgttcttcttcttggcaccagacttggaaacctggaggc 2100

                                                                        
Query: 189  tgcggtacactgcgctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagt 248
            |||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 2099 tgcggtacactgagctaagcctcgcaagagccggcttggtcaggtcaggcctgtagtagt 2040

                
Query: 249  tgtc 252
            ||||
Sbjct: 2039 tgtc 2036
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>ref|XM_475816.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 444

 Score =  196 bits (99), Expect = 2e-47
 Identities = 117/123 (95%)
 Strand = Plus / Minus

                                                                       
Query: 130 ttacagcttagttggctgcctgttcttcttcttgaccccagacttggaaacctggaggct 189
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 444 ttacagcttagttggctgcctgttcttcttcttggcaccagacttggaaacctggaggct 385

                                                                       
Query: 190 gcggtacactgcgctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagtt 249
           ||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 gcggtacactgagctaagcctcgcaagagccggcttggtcaggtcaggcctgtagtagtt 325

              
Query: 250 gtc 252
           |||
Sbjct: 324 gtc 322
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  159 bits (80), Expect = 5e-36
 Identities = 113/124 (91%)
 Strand = Plus / Plus

                                                                            
Query: 129      tttacagcttagttggctgcctgttcttcttcttgaccccagacttggaaacctggaggc 188
                |||||||||| | ||||||||||||||||||||| || |||||||||| |||||||||||
Sbjct: 35275049 tttacagcttggctggctgcctgttcttcttcttcacaccagacttggcaacctggaggc 35275108

                                                                            
Query: 189      tgcggtacactgcgctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagt 248
                |||||||||||| ||| ||||||||||| ||||| |||||||| || |||||||||||||
Sbjct: 35275109 tgcggtacactgagctaagccttgcaagagccggtttggtcagatctggcctgtagtagt 35275168

                    
Query: 249      tgtc 252
                ||||
Sbjct: 35275169 tgtc 35275172
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>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1119_A01
          Length = 108727

 Score =  159 bits (80), Expect = 5e-36
 Identities = 113/124 (91%)
 Strand = Plus / Plus

                                                                         
Query: 129   tttacagcttagttggctgcctgttcttcttcttgaccccagacttggaaacctggaggc 188
             |||||||||| | ||||||||||||||||||||| || |||||||||| |||||||||||
Sbjct: 25383 tttacagcttggctggctgcctgttcttcttcttcacaccagacttggcaacctggaggc 25442

                                                                         
Query: 189   tgcggtacactgcgctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagt 248
             |||||||||||| ||| ||||||||||| ||||| |||||||| || |||||||||||||
Sbjct: 25443 tgcggtacactgagctaagccttgcaagagccggtttggtcagatctggcctgtagtagt 25502

                 
Query: 249   tgtc 252
             ||||
Sbjct: 25503 tgtc 25506
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>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0474F11
          Length = 139544

 Score =  159 bits (80), Expect = 5e-36
 Identities = 113/124 (91%)
 Strand = Plus / Plus

                                                                         
Query: 129   tttacagcttagttggctgcctgttcttcttcttgaccccagacttggaaacctggaggc 188
             |||||||||| | ||||||||||||||||||||| || |||||||||| |||||||||||
Sbjct: 87099 tttacagcttggctggctgcctgttcttcttcttcacaccagacttggcaacctggaggc 87158

                                                                         
Query: 189   tgcggtacactgcgctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagt 248
             |||||||||||| ||| ||||||||||| ||||| |||||||| || |||||||||||||
Sbjct: 87159 tgcggtacactgagctaagccttgcaagagccggtttggtcagatctggcctgtagtagt 87218

                 
Query: 249   tgtc 252
             ||||
Sbjct: 87219 tgtc 87222
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>dbj|AK062099.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-A03, full
           insert sequence
          Length = 669

 Score =  159 bits (80), Expect = 5e-36
 Identities = 113/124 (91%)
 Strand = Plus / Minus

                                                                       
Query: 129 tttacagcttagttggctgcctgttcttcttcttgaccccagacttggaaacctggaggc 188
           |||||||||| | ||||||||||||||||||||| || |||||||||| |||||||||||
Sbjct: 282 tttacagcttggctggctgcctgttcttcttcttcacaccagacttggcaacctggaggc 223

                                                                       
Query: 189 tgcggtacactgcgctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagt 248
           |||||||||||| ||| ||||||||||| ||||| |||||||| || |||||||||||||
Sbjct: 222 tgcggtacactgagctaagccttgcaagagccggtttggtcagatctggcctgtagtagt 163

               
Query: 249 tgtc 252
           ||||
Sbjct: 162 tgtc 159
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>ref|XM_468444.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 444

 Score =  157 bits (79), Expect = 2e-35
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                       
Query: 130 ttacagcttagttggctgcctgttcttcttcttgaccccagacttggaaacctggaggct 189
           ||||||||| | ||||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct: 444 ttacagcttggctggctgcctgttcttcttcttcacaccagacttggcaacctggaggct 385

                                                                       
Query: 190 gcggtacactgcgctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagtt 249
           ||||||||||| ||| ||||||||||| ||||| |||||||| || ||||||||||||||
Sbjct: 384 gcggtacactgagctaagccttgcaagagccggtttggtcagatctggcctgtagtagtt 325

              
Query: 250 gtc 252
           |||
Sbjct: 324 gtc 322
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>gb|BT017752.1| Zea mays clone EL01N0450E02.c mRNA sequence
          Length = 729

 Score =  147 bits (74), Expect = 2e-32
 Identities = 101/110 (91%)
 Strand = Plus / Minus

                                                                       
Query: 143 ggctgcctgttcttcttcttgaccccagacttggaaacctggaggctgcggtacactgcg 202
           ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |
Sbjct: 475 ggctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagag 416

                                                             
Query: 203 ctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
           ||||||||  ||||||||| ||||||||| ||||||||||| ||||||||
Sbjct: 415 ctcagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtc 366
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>gb|BT017240.1| Zea mays clone EL01N0305E06.c mRNA sequence
          Length = 663

 Score =  147 bits (74), Expect = 2e-32
 Identities = 101/110 (91%)
 Strand = Plus / Minus

                                                                       
Query: 143 ggctgcctgttcttcttcttgaccccagacttggaaacctggaggctgcggtacactgcg 202
           ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |
Sbjct: 419 ggctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagag 360

                                                             
Query: 203 ctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
           ||||||||  ||||||||| ||||||||| ||||||||||| ||||||||
Sbjct: 359 ctcagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtc 310
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>ref|NM_191653.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 438

 Score =  143 bits (72), Expect = 3e-31
 Identities = 99/108 (91%)
 Strand = Plus / Minus

                                                                       
Query: 145 ctgcctgttcttcttcttgaccccagacttggaaacctggaggctgcggtacactgcgct 204
           ||||||||||||||| ||||| ||||| |||| |||||||||||||||||| ||||||||
Sbjct: 429 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 370

                                                           
Query: 205 cagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
           |||||||||||| || |||||||| |||||||||| ||||||||||||
Sbjct: 369 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtc 322
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  143 bits (72), Expect = 3e-31
 Identities = 99/108 (91%)
 Strand = Plus / Minus

                                                                            
Query: 145      ctgcctgttcttcttcttgaccccagacttggaaacctggaggctgcggtacactgcgct 204
                ||||||||||||||| ||||| ||||| |||| |||||||||||||||||| ||||||||
Sbjct: 29309860 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 29309801

                                                                
Query: 205      cagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
                |||||||||||| || |||||||| |||||||||| ||||||||||||
Sbjct: 29309800 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtc 29309753
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>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0692C11
          Length = 169562

 Score =  143 bits (72), Expect = 3e-31
 Identities = 99/108 (91%)
 Strand = Plus / Minus

                                                                         
Query: 145   ctgcctgttcttcttcttgaccccagacttggaaacctggaggctgcggtacactgcgct 204
             ||||||||||||||| ||||| ||||| |||| |||||||||||||||||| ||||||||
Sbjct: 88723 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 88664

                                                             
Query: 205   cagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
             |||||||||||| || |||||||| |||||||||| ||||||||||||
Sbjct: 88663 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtc 88616
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>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0510F09
          Length = 138277

 Score =  143 bits (72), Expect = 3e-31
 Identities = 99/108 (91%)
 Strand = Plus / Minus

                                                                        
Query: 145  ctgcctgttcttcttcttgaccccagacttggaaacctggaggctgcggtacactgcgct 204
            ||||||||||||||| ||||| ||||| |||| |||||||||||||||||| ||||||||
Sbjct: 4922 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 4863

                                                            
Query: 205  cagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
            |||||||||||| || |||||||| |||||||||| ||||||||||||
Sbjct: 4862 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtc 4815
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>gb|BT016863.1| Zea mays clone Contig696 mRNA sequence
          Length = 1007

 Score =  135 bits (68), Expect = 7e-29
 Identities = 98/108 (90%)
 Strand = Plus / Plus

                                                                       
Query: 145 ctgcctgttcttcttcttgaccccagacttggaaacctggaggctgcggtacactgcgct 204
           ||||||||||||||||||||| || ||||||| ||||||||||||||||||||| | |||
Sbjct: 193 ctgcctgttcttcttcttgacaccggacttggcaacctggaggctgcggtacaccgagct 252

                                                           
Query: 205 cagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
            ||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 253 tagcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 300
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>gb|AY103648.1| Zea mays PCO068622 mRNA sequence
          Length = 954

 Score =  135 bits (68), Expect = 7e-29
 Identities = 98/108 (90%)
 Strand = Plus / Minus

                                                                       
Query: 145 ctgcctgttcttcttcttgaccccagacttggaaacctggaggctgcggtacactgcgct 204
           ||||||||||||||||||||| || ||||||| ||||||||||||||||||||| | |||
Sbjct: 655 ctgcctgttcttcttcttgacaccggacttggcaacctggaggctgcggtacaccgagct 596

                                                           
Query: 205 cagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
            ||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 595 tagcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 548
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>gb|AF457940.1| Zea mays clone cho1c.pk002.j11, mRNA sequence
          Length = 505

 Score =  103 bits (52), Expect = 3e-19
 Identities = 88/99 (88%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 155 ttcttcttgaccccagacttggaaacct-ggaggctgcggtacactgcgctcagccttgc 213
           ||||||||||| |||||||||| ||||| |||||||||||||||| | ||||||| |  |
Sbjct: 460 ttcttcttgacaccagacttggcaaccttggaggctgcggtacacagagctcagcntacc 401

                                                  
Query: 214 aagggccggcttggtcaggtcaggcctgtagtagttgtc 252
           |||||||| ||||||||| ||||||||||| ||||||||
Sbjct: 400 aagggccgacttggtcagatcaggcctgtaatagttgtc 362
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>gb|BT013039.1| Lycopersicon esculentum clone 114289R, mRNA sequence
          Length = 708

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 89/108 (82%)
 Strand = Plus / Minus

                                                                       
Query: 145 ctgcctgttcttcttcttgaccccagacttggaaacctggaggctgcggtacactgcgct 204
           |||||||||| ||||||| || |||||||||| ||||  |||||| | || ||| || ||
Sbjct: 472 ctgcctgttcctcttcttcacgccagacttggcaaccctgaggcttctgttcacggcact 413

                                                           
Query: 205 cagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
           || |||||||||||| | |||  |||| || |||||||| ||||||||
Sbjct: 412 caaccttgcaagggctgccttcttcagatctggcctgtaatagttgtc 365
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>gb|DQ200370.1| Solanum tuberosum clone 057E05 unknown mRNA
          Length = 611

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 203 ctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
           |||| |||||||||||| | |||  |||| || |||||||||||||||||
Sbjct: 389 ctcaaccttgcaagggctgccttcttcagatctggcctgtagtagttgtc 340
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>gb|DQ200369.1| Solanum tuberosum clone 057D08 unknown mRNA
          Length = 610

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 203 ctcagccttgcaagggccggcttggtcaggtcaggcctgtagtagttgtc 252
           |||| |||||||||||| | |||  |||| || |||||||||||||||||
Sbjct: 388 ctcaaccttgcaagggctgccttcttcagatctggcctgtagtagttgtc 339
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>ref|NM_119086.3| Arabidopsis thaliana structural constituent of ribosome AT4G29410
           mRNA, complete cds
          Length = 709

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 233 tcaggcctgtagtagttgtcc 253
           |||||||||||||||||||||
Sbjct: 420 tcaggcctgtagtagttgtcc 400
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>gb|AC115122.4| Mus musculus BAC clone RP24-108L20 from chromosome 14, complete sequence
          Length = 163480

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 216    gggccggcttggtcaggtcag 236
              |||||||||||||||||||||
Sbjct: 119665 gggccggcttggtcaggtcag 119685
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>gb|AY829771.1| Lonomia obliqua ribosomal protein 14 mRNA, complete cds
          Length = 447

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 147 gcctgttcttcttcttgaccc 167
           |||||||||||||||||||||
Sbjct: 182 gcctgttcttcttcttgaccc 162
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>gb|AC132807.3| Homo sapiens chromosome 3 clone RP11-147G2, complete sequence
          Length = 171678

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 94    tgataacatgagtgccaaaag 114
             |||||||||||||||||||||
Sbjct: 57089 tgataacatgagtgccaaaag 57109
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>gb|BT000047.1| Arabidopsis thaliana putative protein (At4g29410) mRNA, complete
           cds
          Length = 556

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 233 tcaggcctgtagtagttgtcc 253
           |||||||||||||||||||||
Sbjct: 338 tcaggcctgtagtagttgtcc 318
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>emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 71
          Length = 200001

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 233  tcaggcctgtagtagttgtcc 253
            |||||||||||||||||||||
Sbjct: 3184 tcaggcctgtagtagttgtcc 3204
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>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
          Length = 198429

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 233    tcaggcctgtagtagttgtcc 253
              |||||||||||||||||||||
Sbjct: 196613 tcaggcctgtagtagttgtcc 196633
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>gb|AC104297.1| Homo sapiens chromosome 3 clone RP11-8D23, complete sequence
          Length = 151504

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    tgataacatgagtgccaaaag 114
             |||||||||||||||||||||
Sbjct: 17007 tgataacatgagtgccaaaag 16987
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>gb|AY072328.1| Arabidopsis thaliana putative protein (At4g29410) mRNA, complete
           cds
          Length = 660

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 233 tcaggcctgtagtagttgtcc 253
           |||||||||||||||||||||
Sbjct: 415 tcaggcctgtagtagttgtcc 395
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>emb|BX829363.1|CNS0A3JN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL95ZC06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 675

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 233 tcaggcctgtagtagttgtcc 253
           |||||||||||||||||||||
Sbjct: 405 tcaggcctgtagtagttgtcc 385
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>emb|BX828625.1|CNS0A2F6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL22ZH11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 691

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 233 tcaggcctgtagtagttgtcc 253
           |||||||||||||||||||||
Sbjct: 402 tcaggcctgtagtagttgtcc 382
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>gb|AY088304.1| Arabidopsis thaliana clone 5426 mRNA, complete sequence
          Length = 665

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 233 tcaggcctgtagtagttgtcc 253
           |||||||||||||||||||||
Sbjct: 420 tcaggcctgtagtagttgtcc 400
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>gb|AC148978.3| Mus musculus BAC clone RP23-359K8 from 14, complete sequence
          Length = 241799

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 216    gggccggcttggtcaggtcag 236
              |||||||||||||||||||||
Sbjct: 206646 gggccggcttggtcaggtcag 206666
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>gb|AC123824.4| Mus musculus BAC clone RP24-84D16 from chromosome 12, complete sequence
          Length = 205607

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aacagacatgataacatgag 105
             ||||||||||||||||||||
Sbjct: 56559 aacagacatgataacatgag 56578
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>gb|AC159983.8| Mus musculus BAC clone RP23-192C23 from chromosome 13, complete
             sequence
          Length = 193502

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   tggctgcctgttcttcttct 161
             ||||||||||||||||||||
Sbjct: 61910 tggctgcctgttcttcttct 61929
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>emb|AL161774.49| Human DNA sequence from clone RP11-245B11 on chromosome 13 Contains the
             5' end of the gene for RAS p21 protein activator (GTPase
             activating protein) 3 (Ins(1,3,4,5)P4-binding protein)
             (GAP1IP4BP), a novel gene and 20 CpG islands, complete
             sequence
          Length = 162296

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   tttacagcttagttggctgc 148
             ||||||||||||||||||||
Sbjct: 59876 tttacagcttagttggctgc 59857
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>emb|AL034380.26|HS50O24 Human DNA sequence from clone RP1-50O24 on chromosome 1p35.1-35.3
             Contains the 3' end of the SMARCF1 gene for SWI/SNF
             related, matrix associated, actin dependent regulator of
             chromatin (subfamily f, member 1), a novel gene
             (FLJ20477), the ZDHHC18 gene for zinc finger, DHHC domain
             containing 18, the SFN gene for stratifin, two novel
             genes, a novel gene (FLJ10349), the 3' end of a novel gene
             (FLJ12455) and two CpG islands, complete sequence
          Length = 157435

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   gtcaggcctgtagtagttgt 251
             ||||||||||||||||||||
Sbjct: 89354 gtcaggcctgtagtagttgt 89373
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>gb|AC091782.5| Genomic sequence for Mus musculus, clone RP23-103P23, complete sequence
          Length = 195574

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   tggctgcctgttcttcttct 161
             ||||||||||||||||||||
Sbjct: 61777 tggctgcctgttcttcttct 61796
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>gb|AC018499.3| Homo sapiens chromosome 3 clone RP11-267L16 map 3p, complete sequence
          Length = 198444

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    ttgaccccagacttggaaac 180
              ||||||||||||||||||||
Sbjct: 166946 ttgaccccagacttggaaac 166927
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>gb|AC018839.5| Homo sapiens chromosome 3 clone RP11-593J10 map 3p, complete sequence
          Length = 182288

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    ttgaccccagacttggaaac 180
              ||||||||||||||||||||
Sbjct: 117552 ttgaccccagacttggaaac 117571
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>gb|AC018502.6| Homo sapiens chromosome 3 clone RP11-327H17 map 3p, complete sequence
          Length = 198459

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    ttgaccccagacttggaaac 180
              ||||||||||||||||||||
Sbjct: 166955 ttgaccccagacttggaaac 166936


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,783,583
Number of Sequences: 3902068
Number of extensions: 2783583
Number of successful extensions: 36976
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36892
Number of HSP's gapped (non-prelim): 83
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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