ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18p02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192329.1| Oryza sativa (japonica cultivar-group), predic... 163 9e-37
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 163 9e-37
3dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic D... 163 9e-37
4dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic D... 163 9e-37
5dbj|AK101723.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 9e-37
6dbj|AK061541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 9e-37
7gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, co... 48 0.037
8emb|AL662779.10| Mouse DNA sequence from clone RP23-177A4 on chr... 44 0.58
9gb|AC115795.11| Mus musculus chromosome 5, clone RP23-400O10, co... 42 2.3
10gb|AC164302.2| Mus musculus BAC clone RP23-286N12 from chromosom... 42 2.3
11gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosom... 42 2.3
12gb|AC006372.2| Homo sapiens BAC clone RP11-331D5 from 7, complet... 42 2.3
13gb|AC122332.4| Mus musculus BAC clone RP23-346G14 from chromosom... 42 2.3
14gb|AC159199.3| Mus musculus BAC clone RP23-401H23 from chromosom... 42 2.3
15gb|AC093570.30| Mus musculus strain C57BL/6J chromosome 5 clone ... 42 2.3
16gb|AC005988.1|AC005988 Homo sapiens chromosome 17, clone hRPK.29... 42 2.3
17emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chr... 42 2.3
18gb|AC134862.4| Mus musculus BAC clone RP24-91P2 from 5, complete... 42 2.3
19gb|AC107645.28| Mus musculus chromosome 15, clone RP23-78J21, co... 40 9.1
20gb|AY633632.1| Petaurus breviceps voucher AMSM15128 microsatelli... 40 9.1
21gb|AY687440.1| Uncultured bacterium clone HZ24 genomic sequence 40 9.1
22gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 9.1
23gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 9.1
24gb|AC145891.4| Pan troglodytes BAC clone RP43-20A24 from 7, comp... 40 9.1
25gb|AC157771.8| Mus musculus chromosome 1, clone RP24-287N8, comp... 40 9.1
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.1
27gb|AC183614.3| Pan troglodytes BAC clone CH251-186N21 from chrom... 40 9.1
28gb|AC125357.4| Mus musculus BAC clone RP23-235J18 from chromosom... 40 9.1
29gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
30gb|AC087386.7| Homo sapiens chromosome 15, clone RP11-173D3, com... 40 9.1
31gb|AC122914.4| Mus musculus BAC clone RP23-26F9 from 15, complet... 40 9.1
32gb|AC073272.7| Homo sapiens BAC clone RP11-590O19 from 7, comple... 40 9.1
33gb|AC126071.5| Rattus norvegicus 10 BAC CH230-209B21 (Children's... 40 9.1
34emb|AL162741.44| Human DNA sequence from clone RP5-902P8 on chro... 40 9.1
35emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome... 40 9.1
36emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 9.1
37emb|AL161552.2|ATCHRIV52 Arabidopsis thaliana DNA chromosome 4, ... 40 9.1
38emb|AL022224.1|ATF1C12 Arabidopsis thaliana DNA chromosome 4, BA... 40 9.1
39emb|AJ251835.1|MMU251835 Mus musculus Kcnq1, Ltrpc5, Mash2, Tapa... 40 9.1
40emb|AL596255.17| Mouse DNA sequence from clone RP23-6K20 on chro... 40 9.1
41emb|AL832802.1|HSM804113 Homo sapiens genomic DNA; cDNA DKFZp667... 40 9.1
42gb|AC108217.3| Homo sapiens BAC clone RP11-681L8 from 4, complet... 40 9.1
43gb|AY039000.1| Mus musculus tetraspanin (Tssc6) mRNA, complete cds 40 9.1
44gb|AC022253.6| Homo sapiens chromosome 11, clone RP11-35P21, com... 40 9.1
45gb|AC126335.16| Homo sapiens chromosome 15, clone RP11-854K16, c... 40 9.1
46dbj|AK080034.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 9.1
47gb|AC000091.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 91c ... 40 9.1
48dbj|AK083241.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 9.1
49gb|AF367759.1|AF367759 Mus musculus gamma-1 syntrophin (Sntg1) m... 40 9.1
50gb|AC152946.1| Mus musculus 10 BAC RP23-40N7 (Roswell Park Cance... 40 9.1
51gb|AC158607.7| Mus musculus 10 BAC RP23-183G4 (Roswell Park Canc... 40 9.1
52gb|AC158609.10| Mus musculus 6 BAC RP24-89F5 (Roswell Park Cance... 40 9.1
53emb|AL954715.13| Zebrafish DNA sequence from clone DKEY-23I12, c... 40 9.1
54dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
55gb|AC102703.16| Mus musculus chromosome 1, clone RP24-442E5, com... 40 9.1
56ref|NM_027671.3| Mus musculus syntrophin, gamma 1 (Sntg1), mRNA 40 9.1
57gb|AC127533.9| Homo sapiens chromosome 15, clone RP11-1363O20, c... 40 9.1
58gb|AC134676.5| Homo sapiens chromosome 15, clone CTD-2290E14, co... 40 9.1
59ref|XM_575753.1| PREDICTED: Rattus norvegicus similar to syntrop... 40 9.1
60dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 9.1
61emb|AL954701.10| Mouse DNA sequence from clone RP23-43J11 on chr... 40 9.1
62gb|AC015800.13| Mus musculus chromosome 7, clone RP23-366M16, co... 40 9.1
63emb|BX510992.5| Zebrafish DNA sequence from clone DKEYP-93H6 in ... 40 9.1
64gb|AC116841.11| Mus musculus chromosome 18, clone RP24-390I10, c... 40 9.1
65emb|BX000446.6| Zebrafish DNA sequence from clone CH211-284N24, ... 40 9.1
66gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complet... 40 9.1
67emb|AL845304.4| Mouse DNA sequence from clone RP23-184H6 on chro... 40 9.1
68emb|AJ251788.1|MMU251788 Mus musculus Tssc6 gene 40 9.1
69dbj|AP002736.1| Mus musculus genomic DNA, chromosome 7, clone:B3... 40 9.1 
>ref|NM_192329.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1257

 Score =  163 bits (82), Expect = 9e-37
 Identities = 144/164 (87%), Gaps = 3/164 (1%)
 Strand = Plus / Minus

                                                                        
Query: 479  gccggcggccagagacgggagaaggtggacgacacggcgatgccggccatgttgaggccc 538
            |||||||||||||| |||||||||||||| || |||||||| ||||||| |||||| |||
Sbjct: 1220 gccggcggccagaggcgggagaaggtggaggagacggcgattccggccacgttgagcccc 1161

                                                                        
Query: 539  ttggcgccgccccagtccggcaccggcacccacctccactctccgcgcgcgcggtcgtac 598
            |||| |||   |||||||||||| |||||||||| |||||| ||||| ||||||||||||
Sbjct: 1160 ttggtgcc---ccagtccggcacgggcacccaccaccactcgccgcgggcgcggtcgtac 1104

                                                        
Query: 599  gacagccacaccaggtcccacgcacccctgcagttggagatgag 642
            ||||||||||| | |||||| || || | |||||||||||||||
Sbjct: 1103 gacagccacacgatgtcccaggcgccacggcagttggagatgag 1060
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  163 bits (82), Expect = 9e-37
 Identities = 144/164 (87%), Gaps = 3/164 (1%)
 Strand = Plus / Minus

                                                                            
Query: 479      gccggcggccagagacgggagaaggtggacgacacggcgatgccggccatgttgaggccc 538
                |||||||||||||| |||||||||||||| || |||||||| ||||||| |||||| |||
Sbjct: 26070172 gccggcggccagaggcgggagaaggtggaggagacggcgattccggccacgttgagcccc 26070113

                                                                            
Query: 539      ttggcgccgccccagtccggcaccggcacccacctccactctccgcgcgcgcggtcgtac 598
                |||| |||   |||||||||||| |||||||||| |||||| ||||| ||||||||||||
Sbjct: 26070112 ttggtgcc---ccagtccggcacgggcacccaccaccactcgccgcgggcgcggtcgtac 26070056

                                                            
Query: 599      gacagccacaccaggtcccacgcacccctgcagttggagatgag 642
                ||||||||||| | |||||| || || | |||||||||||||||
Sbjct: 26070055 gacagccacacgatgtcccaggcgccacggcagttggagatgag 26070012
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>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0707D10
          Length = 172003

 Score =  163 bits (82), Expect = 9e-37
 Identities = 144/164 (87%), Gaps = 3/164 (1%)
 Strand = Plus / Minus

                                                                          
Query: 479    gccggcggccagagacgggagaaggtggacgacacggcgatgccggccatgttgaggccc 538
              |||||||||||||| |||||||||||||| || |||||||| ||||||| |||||| |||
Sbjct: 166239 gccggcggccagaggcgggagaaggtggaggagacggcgattccggccacgttgagcccc 166180

                                                                          
Query: 539    ttggcgccgccccagtccggcaccggcacccacctccactctccgcgcgcgcggtcgtac 598
              |||| |||   |||||||||||| |||||||||| |||||| ||||| ||||||||||||
Sbjct: 166179 ttggtgcc---ccagtccggcacgggcacccaccaccactcgccgcgggcgcggtcgtac 166123

                                                          
Query: 599    gacagccacaccaggtcccacgcacccctgcagttggagatgag 642
              ||||||||||| | |||||| || || | |||||||||||||||
Sbjct: 166122 gacagccacacgatgtcccaggcgccacggcagttggagatgag 166079
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>dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0038D11
          Length = 156465

 Score =  163 bits (82), Expect = 9e-37
 Identities = 144/164 (87%), Gaps = 3/164 (1%)
 Strand = Plus / Minus

                                                                         
Query: 479   gccggcggccagagacgggagaaggtggacgacacggcgatgccggccatgttgaggccc 538
             |||||||||||||| |||||||||||||| || |||||||| ||||||| |||||| |||
Sbjct: 73747 gccggcggccagaggcgggagaaggtggaggagacggcgattccggccacgttgagcccc 73688

                                                                         
Query: 539   ttggcgccgccccagtccggcaccggcacccacctccactctccgcgcgcgcggtcgtac 598
             |||| |||   |||||||||||| |||||||||| |||||| ||||| ||||||||||||
Sbjct: 73687 ttggtgcc---ccagtccggcacgggcacccaccaccactcgccgcgggcgcggtcgtac 73631

                                                         
Query: 599   gacagccacaccaggtcccacgcacccctgcagttggagatgag 642
             ||||||||||| | |||||| || || | |||||||||||||||
Sbjct: 73630 gacagccacacgatgtcccaggcgccacggcagttggagatgag 73587
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>dbj|AK101723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061B09, full
            insert sequence
          Length = 1629

 Score =  163 bits (82), Expect = 9e-37
 Identities = 144/164 (87%), Gaps = 3/164 (1%)
 Strand = Plus / Minus

                                                                        
Query: 479  gccggcggccagagacgggagaaggtggacgacacggcgatgccggccatgttgaggccc 538
            |||||||||||||| |||||||||||||| || |||||||| ||||||| |||||| |||
Sbjct: 1275 gccggcggccagaggcgggagaaggtggaggagacggcgattccggccacgttgagcccc 1216

                                                                        
Query: 539  ttggcgccgccccagtccggcaccggcacccacctccactctccgcgcgcgcggtcgtac 598
            |||| |||   |||||||||||| |||||||||| |||||| ||||| ||||||||||||
Sbjct: 1215 ttggtgcc---ccagtccggcacgggcacccaccaccactcgccgcgggcgcggtcgtac 1159

                                                        
Query: 599  gacagccacaccaggtcccacgcacccctgcagttggagatgag 642
            ||||||||||| | |||||| || || | |||||||||||||||
Sbjct: 1158 gacagccacacgatgtcccaggcgccacggcagttggagatgag 1115
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>dbj|AK061541.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G10, full
           insert sequence
          Length = 1071

 Score =  163 bits (82), Expect = 9e-37
 Identities = 144/164 (87%), Gaps = 3/164 (1%)
 Strand = Plus / Minus

                                                                       
Query: 479 gccggcggccagagacgggagaaggtggacgacacggcgatgccggccatgttgaggccc 538
           |||||||||||||| |||||||||||||| || |||||||| ||||||| |||||| |||
Sbjct: 659 gccggcggccagaggcgggagaaggtggaggagacggcgattccggccacgttgagcccc 600

                                                                       
Query: 539 ttggcgccgccccagtccggcaccggcacccacctccactctccgcgcgcgcggtcgtac 598
           |||| |||   |||||||||||| |||||||||| |||||| ||||| ||||||||||||
Sbjct: 599 ttggtgcc---ccagtccggcacgggcacccaccaccactcgccgcgggcgcggtcgtac 543

                                                       
Query: 599 gacagccacaccaggtcccacgcacccctgcagttggagatgag 642
           ||||||||||| | |||||| || || | |||||||||||||||
Sbjct: 542 gacagccacacgatgtcccaggcgccacggcagttggagatgag 499
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>gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, complete sequence
          Length = 209547

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 282   ggaggggagaacagaggagaggag 305
             ||||||||||||||||||||||||
Sbjct: 47258 ggaggggagaacagaggagaggag 47281
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>emb|AL662779.10| Mouse DNA sequence from clone RP23-177A4 on chromosome 11 Contains the
             Kif2b gene for kinesin family member 28, complete sequence
          Length = 231926

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 280   atggaggggagaacagaggagaggag 305
             ||||||||||||| ||||||||||||
Sbjct: 40796 atggaggggagaagagaggagaggag 40771
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>gb|AC115795.11| Mus musculus chromosome 5, clone RP23-400O10, complete sequence
          Length = 207103

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 282   ggaggggagaacagaggagaggagg 306
             ||||||||||| |||||||||||||
Sbjct: 65540 ggaggggagaagagaggagaggagg 65516
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>gb|AC164302.2| Mus musculus BAC clone RP23-286N12 from chromosome 16, complete sequence
          Length = 192765

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 350    caaacacctctcccaagaacc 370
              |||||||||||||||||||||
Sbjct: 156927 caaacacctctcccaagaacc 156907
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>gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosome 10, complete sequence
          Length = 180642

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 282    ggaggggagaacagaggagaggagg 306
              ||||||||||| |||||||||||||
Sbjct: 162758 ggaggggagaagagaggagaggagg 162782
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>gb|AC006372.2| Homo sapiens BAC clone RP11-331D5 from 7, complete sequence
          Length = 190846

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 282   ggaggggagaacagaggagaggagg 306
             ||||||||||| |||||||||||||
Sbjct: 49800 ggaggggagaagagaggagaggagg 49776



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 282   ggaggggagaacagaggagaggagg 306
             ||||||||||| |||||||||||||
Sbjct: 49741 ggaggggagaagagaggagaggagg 49717
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>gb|AC122332.4| Mus musculus BAC clone RP23-346G14 from chromosome 10, complete
             sequence
          Length = 214728

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 282   ggaggggagaacagaggagaggagg 306
             ||||||||||| |||||||||||||
Sbjct: 14289 ggaggggagaagagaggagaggagg 14313
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>gb|AC159199.3| Mus musculus BAC clone RP23-401H23 from chromosome 16, complete sequence
          Length = 218059

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 282    ggaggggagaacagaggagaggagg 306
              ||||||||||| |||||||||||||
Sbjct: 142387 ggaggggagaagagaggagaggagg 142411
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>gb|AC093570.30| Mus musculus strain C57BL/6J chromosome 5 clone rp23-115a12, complete
              sequence
          Length = 203838

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 282    ggaggggagaacagaggagaggagg 306
              ||||||||||||||||||| |||||
Sbjct: 191611 ggaggggagaacagaggaggggagg 191587
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>gb|AC005988.1|AC005988 Homo sapiens chromosome 17, clone hRPK.299_G_24, complete sequence
          Length = 173126

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 282    ggaggggagaacagaggagaggagg 306
              ||||||||||| |||||||||||||
Sbjct: 166967 ggaggggagaagagaggagaggagg 166943
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>emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chromosome 16, complete
              sequence
          Length = 229346

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 350    caaacacctctcccaagaacc 370
              |||||||||||||||||||||
Sbjct: 228945 caaacacctctcccaagaacc 228965
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>gb|AC134862.4| Mus musculus BAC clone RP24-91P2 from 5, complete sequence
          Length = 205726

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 282    ggaggggagaacagaggagaggagg 306
              ||||||||||| |||||||||||||
Sbjct: 153246 ggaggggagaagagaggagaggagg 153270
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>gb|AC107645.28| Mus musculus chromosome 15, clone RP23-78J21, complete sequence
          Length = 240912

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 283    gaggggagaacagaggagaggagg 306
              |||||||||| |||||||||||||
Sbjct: 188827 gaggggagaaaagaggagaggagg 188850
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>gb|AY633632.1| Petaurus breviceps voucher AMSM15128 microsatellite Pet8 sequence
          Length = 422

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 282 ggaggggagaacagaggagaggag 305
           ||||||||||| ||||||||||||
Sbjct: 334 ggaggggagaagagaggagaggag 357
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>gb|AY687440.1| Uncultured bacterium clone HZ24 genomic sequence
          Length = 7776

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 511  cacggcgatgccggccatgttgag 534
            ||||||||||||||||| ||||||
Sbjct: 6397 cacggcgatgccggccaggttgag 6420
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 466     gcagatggttggcgccggcg 485
               ||||||||||||||||||||
Sbjct: 3186465 gcagatggttggcgccggcg 3186446



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 466     gcagatggttggcgccggcg 485
               ||||||||||||||||||||
Sbjct: 3186412 gcagatggttggcgccggcg 3186393
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 542     gcgccgccccagtccggcac 561
               ||||||||||||||||||||
Sbjct: 2687720 gcgccgccccagtccggcac 2687701
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>gb|AC145891.4| Pan troglodytes BAC clone RP43-20A24 from 7, complete sequence
          Length = 194412

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              ||||||||||| ||||||||||||
Sbjct: 173522 ggaggggagaagagaggagaggag 173545
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>gb|AC157771.8| Mus musculus chromosome 1, clone RP24-287N8, complete sequence
          Length = 189621

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   ggaggggagaacagaggagaggag 305
             ||||||||||| ||||||||||||
Sbjct: 18336 ggaggggagaagagaggagaggag 18359
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 282     ggaggggagaacagaggagaggag 305
               ||||||||||| ||||||||||||
Sbjct: 6699233 ggaggggagaagagaggagaggag 6699210
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>gb|AC183614.3| Pan troglodytes BAC clone CH251-186N21 from chromosome 15, complete
             sequence
          Length = 136531

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 609   ccaggtcccacgcacccctgcagt 632
             |||||||||| |||||||||||||
Sbjct: 16032 ccaggtcccaggcacccctgcagt 16055
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>gb|AC125357.4| Mus musculus BAC clone RP23-235J18 from chromosome 9, complete sequence
          Length = 217511

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              ||||||||||| ||||||||||||
Sbjct: 140568 ggaggggagaagagaggagaggag 140545
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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 282   ggaggggagaacagaggagaggag 305
             ||||||||||| ||||||||||||
Sbjct: 84781 ggaggggagaagagaggagaggag 84758
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>gb|AC087386.7| Homo sapiens chromosome 15, clone RP11-173D3, complete sequence
          Length = 155343

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 609   ccaggtcccacgcacccctgcagt 632
             |||||||||| |||||||||||||
Sbjct: 69410 ccaggtcccaggcacccctgcagt 69387
to top
>gb|AC122914.4| Mus musculus BAC clone RP23-26F9 from 15, complete sequence
          Length = 207417

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 283    gaggggagaacagaggagaggagg 306
              |||||||||| |||||||||||||
Sbjct: 185910 gaggggagaaaagaggagaggagg 185887
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>gb|AC073272.7| Homo sapiens BAC clone RP11-590O19 from 7, complete sequence
          Length = 54594

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 282   ggaggggagaacagaggagaggag 305
             |||||||||| |||||||||||||
Sbjct: 33999 ggaggggagagcagaggagaggag 33976
to top
>gb|AC126071.5| Rattus norvegicus 10 BAC CH230-209B21 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 227741

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              ||||||||||| ||||||||||||
Sbjct: 103486 ggaggggagaagagaggagaggag 103463
to top
>emb|AL162741.44| Human DNA sequence from clone RP5-902P8 on chromosome 1 Contains the 3'
             end of a novel gene, the TNFRSF18 gene for tumor necrosis
             factor receptor superfamily member 18, the TNFRSF4 gene
             for tumor necrosis factor receptor superfamily member 4,
             the gene for calcium binding protein Cab45 precursor
             (Cab45), the B3GALT6 gene for UDP-Gal:betaGal beta
             1,3-galactosyltransferase polypeptide 6, a novel gene, the
             UBE2J2 gene for ubiquitin-conjugating enzyme E2 J2 (UBC6
             homolog, yeast), the SCNN1D gene for sodium channel
             nonvoltage-gated 1 delta, the 3' end of the CENTB5 gene
             for centaurin beta 5 and four CpG islands, complete
             sequence
          Length = 112159

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 563   ggcacccacctccactctcc 582
             ||||||||||||||||||||
Sbjct: 40715 ggcacccacctccactctcc 40734
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>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   gcagatggttggcgccggcg 485
             ||||||||||||||||||||
Sbjct: 73274 gcagatggttggcgccggcg 73255



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   gcagatggttggcgccggcg 485
             ||||||||||||||||||||
Sbjct: 73221 gcagatggttggcgccggcg 73202
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>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             11/14
          Length = 318050

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   gcagatggttggcgccggcg 485
             ||||||||||||||||||||
Sbjct: 23826 gcagatggttggcgccggcg 23807



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   gcagatggttggcgccggcg 485
             ||||||||||||||||||||
Sbjct: 23773 gcagatggttggcgccggcg 23754
to top
>emb|AL161552.2|ATCHRIV52 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52
          Length = 198427

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 358    tctcccaagaaccaagaacgataa 381
              ||||||||||||||||||| ||||
Sbjct: 178322 tctcccaagaaccaagaaccataa 178299
to top
>emb|AL022224.1|ATF1C12 Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSA project)
          Length = 111945

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 358    tctcccaagaaccaagaacgataa 381
              ||||||||||||||||||| ||||
Sbjct: 110899 tctcccaagaaccaagaaccataa 110876
to top
>emb|AJ251835.1|MMU251835 Mus musculus Kcnq1, Ltrpc5, Mash2, Tapa-1, Tssc4 and Tssc6 genes,
              alternative transcripts
          Length = 249487

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              ||||||||||| ||||||||||||
Sbjct: 192281 ggaggggagaagagaggagaggag 192258
to top
>emb|AL596255.17| Mouse DNA sequence from clone RP23-6K20 on chromosome 11 Contains the 3'
              end of the Myh13 gene for skeletal muscle myosin heavy
              polypeptide 13, the 5' end of the Gas7 gene for growth
              arrest specific 7, a novel gene and a CpG island, complete
              sequence
          Length = 251096

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              ||||||||||| ||||||||||||
Sbjct: 195462 ggaggggagaagagaggagaggag 195439
to top
>emb|AL832802.1|HSM804113 Homo sapiens genomic DNA; cDNA DKFZp667M1023 (from clone
            DKFZp667M1023)
          Length = 3630

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 281  tggaggggagaacagaggag 300
            ||||||||||||||||||||
Sbjct: 3355 tggaggggagaacagaggag 3374
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>gb|AC108217.3| Homo sapiens BAC clone RP11-681L8 from 4, complete sequence
          Length = 111201

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   ggaggggagaacagaggagaggag 305
             ||||||||||| ||||||||||||
Sbjct: 77877 ggaggggagaagagaggagaggag 77900
to top
>gb|AY039000.1| Mus musculus tetraspanin (Tssc6) mRNA, complete cds
          Length = 1590

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 282 ggaggggagaacagaggagaggag 305
           ||||||||||| ||||||||||||
Sbjct: 18  ggaggggagaagagaggagaggag 41
to top
>gb|AC022253.6| Homo sapiens chromosome 11, clone RP11-35P21, complete sequence
          Length = 161629

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     tatttttctttcttgagaaa 108
              ||||||||||||||||||||
Sbjct: 128159 tatttttctttcttgagaaa 128140
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>gb|AC126335.16| Homo sapiens chromosome 15, clone RP11-854K16, complete sequence
          Length = 178738

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 609   ccaggtcccacgcacccctgcagt 632
             |||||||||| |||||||||||||
Sbjct: 58362 ccaggtcccaggcacccctgcagt 58339
to top
>dbj|AK080034.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530050P22 product:syntrophin,
            gamma 1, full insert sequence
          Length = 3704

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  agaggagaggaggtaccact 313
            ||||||||||||||||||||
Sbjct: 1840 agaggagaggaggtaccact 1821
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>gb|AC000091.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 91c In DGCR Region,
             complete sequence
          Length = 44928

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 600   acagccacaccaggtcccac 619
             ||||||||||||||||||||
Sbjct: 39619 acagccacaccaggtcccac 39600
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>dbj|AK083241.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
            library, clone:C630030M22 product:syntrophin, gamma 1,
            full insert sequence
          Length = 4511

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  agaggagaggaggtaccact 313
            ||||||||||||||||||||
Sbjct: 1463 agaggagaggaggtaccact 1444
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>gb|AF367759.1|AF367759 Mus musculus gamma-1 syntrophin (Sntg1) mRNA, complete cds
          Length = 2839

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  agaggagaggaggtaccact 313
            ||||||||||||||||||||
Sbjct: 1130 agaggagaggaggtaccact 1111
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>gb|AC152946.1| Mus musculus 10 BAC RP23-40N7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224018

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     atttttctttcttgagaaag 109
              ||||||||||||||||||||
Sbjct: 200065 atttttctttcttgagaaag 200084
to top
>gb|AC158607.7| Mus musculus 10 BAC RP23-183G4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205308

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     atttttctttcttgagaaag 109
              ||||||||||||||||||||
Sbjct: 153872 atttttctttcttgagaaag 153853
to top
>gb|AC158609.10| Mus musculus 6 BAC RP24-89F5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 217329

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              |||||| |||||||||||||||||
Sbjct: 123866 ggagggcagaacagaggagaggag 123843
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>emb|AL954715.13| Zebrafish DNA sequence from clone DKEY-23I12, complete sequence
          Length = 195884

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              |||| |||||||||||||||||||
Sbjct: 138447 ggagaggagaacagaggagaggag 138470



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    ggagaacagaggagaggagg 306
              ||||||||||||||||||||
Sbjct: 138422 ggagaacagaggagaggagg 138441



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              |||| |||||||||||||||||||
Sbjct: 137704 ggagaggagaacagaggagaggag 137727



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              |||| |||||||||||||||||||
Sbjct: 137617 ggagaggagaacagaggagaggag 137640
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 282     ggaggggagaacagaggagaggag 305
               ||||||||||| ||||||||||||
Sbjct: 6698446 ggaggggagaagagaggagaggag 6698423
to top
>gb|AC102703.16| Mus musculus chromosome 1, clone RP24-442E5, complete sequence
          Length = 197439

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   agaggagaggaggtaccact 313
             ||||||||||||||||||||
Sbjct: 89924 agaggagaggaggtaccact 89905
to top
>ref|NM_027671.3| Mus musculus syntrophin, gamma 1 (Sntg1), mRNA
          Length = 3704

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  agaggagaggaggtaccact 313
            ||||||||||||||||||||
Sbjct: 1840 agaggagaggaggtaccact 1821
to top
>gb|AC127533.9| Homo sapiens chromosome 15, clone RP11-1363O20, complete sequence
          Length = 165791

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 609   ccaggtcccacgcacccctgcagt 632
             |||||||||| |||||||||||||
Sbjct: 10474 ccaggtcccaggcacccctgcagt 10497
to top
>gb|AC134676.5| Homo sapiens chromosome 15, clone CTD-2290E14, complete sequence
          Length = 93881

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 609   ccaggtcccacgcacccctgcagt 632
             |||||||||| |||||||||||||
Sbjct: 63683 ccaggtcccaggcacccctgcagt 63706
to top
>ref|XM_575753.1| PREDICTED: Rattus norvegicus similar to syntrophin, gamma 1
           (LOC500394), mRNA
          Length = 1773

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 agaggagaggaggtaccact 313
           ||||||||||||||||||||
Sbjct: 365 agaggagaggaggtaccact 346
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    gcggcagatggttggcgccg 482
              ||||||||||||||||||||
Sbjct: 365114 gcggcagatggttggcgccg 365095
to top
>emb|AL954701.10| Mouse DNA sequence from clone RP23-43J11 on chromosome 2, complete
             sequence
          Length = 129033

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 282   ggaggggagaacagaggagaggag 305
             ||||||||||| ||||||||||||
Sbjct: 71256 ggaggggagaagagaggagaggag 71233
to top
>gb|AC015800.13| Mus musculus chromosome 7, clone RP23-366M16, complete sequence
          Length = 200026

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   ggaggggagaacagaggagaggag 305
             ||||||||||| ||||||||||||
Sbjct: 67249 ggaggggagaagagaggagaggag 67272
to top
>emb|BX510992.5| Zebrafish DNA sequence from clone DKEYP-93H6 in linkage group 20,
             complete sequence
          Length = 211650

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   agaacagaggagaggaggta 308
             ||||||||||||||||||||
Sbjct: 37332 agaacagaggagaggaggta 37313
to top
>gb|AC116841.11| Mus musculus chromosome 18, clone RP24-390I10, complete sequence
          Length = 155933

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   ggagaacagaggagaggagg 306
             ||||||||||||||||||||
Sbjct: 96874 ggagaacagaggagaggagg 96855
to top
>emb|BX000446.6| Zebrafish DNA sequence from clone CH211-284N24, complete sequence
          Length = 160002

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              |||| |||||||||||||||||||
Sbjct: 129036 ggagaggagaacagaggagaggag 129059



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              |||| |||||||||||||||||||
Sbjct: 128582 ggagaggagaacagaggagaggag 128605



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              |||| |||||||||||||||||||
Sbjct: 127871 ggagaggagaacagaggagaggag 127894



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              |||| |||||||||||||||||||
Sbjct: 127784 ggagaggagaacagaggagaggag 127807



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              |||| |||||||||||||||||||
Sbjct: 127551 ggagaggagaacagaggagaggag 127574
to top
>gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complete sequence
          Length = 207908

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   ggaggggagaacagaggagaggag 305
             |||||| |||||||||||||||||
Sbjct: 28961 ggagggcagaacagaggagaggag 28984
to top
>emb|AL845304.4| Mouse DNA sequence from clone RP23-184H6 on chromosome X, complete
             sequence
          Length = 160065

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 282   ggaggggagaacagaggagaggag 305
             ||||||||||| ||||||||||||
Sbjct: 68815 ggaggggagaagagaggagaggag 68792
to top
>emb|AJ251788.1|MMU251788 Mus musculus Tssc6 gene
          Length = 249487

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 282    ggaggggagaacagaggagaggag 305
              ||||||||||| ||||||||||||
Sbjct: 192281 ggaggggagaagagaggagaggag 192258
to top
>dbj|AP002736.1| Mus musculus genomic DNA, chromosome 7, clone:B308O17, complete
             sequences
          Length = 93265

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 282   ggaggggagaacagaggagaggag 305
             ||||||||||| ||||||||||||
Sbjct: 59449 ggaggggagaagagaggagaggag 59426


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,881,758
Number of Sequences: 3902068
Number of extensions: 4881758
Number of successful extensions: 100609
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100006
Number of HSP's gapped (non-prelim): 597
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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