>gb|AF542974.1| Triticum aestivum Emr1 mRNA, complete cds
          Length = 1564

 Score = 1059 bits (534), Expect = 0.0
 Identities = 648/686 (94%), Gaps = 10/686 (1%)
 Strand = Plus / Minus

                                                                        
Query: 54   agacaggttcaggtttcctaatcatggccatataaccaccaatacaagtacaatcaagtt 113
            ||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 1368 agacaagttcaggtttcctaatcatggccatataaccacccatacaggttcaatcaagtt 1309

                                                                        
Query: 114  caggattcctaatcatacaccgcatatggtcttgcatccttagatgtcattatgcagaag 173
            |||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||
Sbjct: 1308 caggattcctaatcatgcaccacatatggtcttgcatctttagatgtcgttatgcagaag 1249

                                                                        
Query: 174  gcaaatctcagatattgctctgagctgcgaatcttcacgagctggagctggaggcctgga 233
            |||||||||||||         || || ||||||||||| ||||||||||||||||||||
Sbjct: 1248 gcaaatctcagat---------agttgtgaatcttcacgggctggagctggaggcctgga 1198

                                                                        
Query: 234  aggtgcctggcctatgtttctccatcagaccggtgagagcggcctcaaactccttctcga 293
            ||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct: 1197 aggtgcctggcctatgtttctccatcaaaccggtgagagcagcatcaaactccttctcga 1138

                                                                        
Query: 294  gctccacctcctttgtcatgtactctttcttgagctgcaccttcttctcctcatgccctt 353
            ||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct: 1137 gctccacctcctttgccatgtactctttcttcagctgcaccttcttctcctcgtgcgctt 1078

                                                                        
Query: 354  ttattaattcgtctctttcagcctcaaactcctgcacgtccttaacctggcactctatga 413
            |||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 ttatcatttcgtccctttcagcctcaaactcctgcacgtccttaacctggcactctatga 1018

                                                                        
Query: 414  accgctgtacctgttccttccttaggctacgattttcagtagtcccagaatccacatcac 473
            ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 1017 accgctgtacctgttccttccttagcctgcgattttcagtagtcccagaatccacatcac 958

                                                                        
Query: 474  actgtctagccttcgcacgctcctcctgcagcaacctctcaaactcgctttccttgtctt 533
            ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 957  actgtctagcctttgcacgctcctcctgcagcaatctctcaaactcgctttccttgtctt 898

                                                                        
Query: 534  ctgtggccttgtgaatgttctcaatctgatcatggaagaacttttcctgggatttcatct 593
            |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 897  ctgtggccttgtgaatgttctctatctgatcatggaagaatttttcctgggatttcatct 838

                                                                        
Query: 594  cttcctcatactcagagtgcttctctttagctttactcctgacgaatatattctcttcca 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  cttcctcatactcagagtgcttctctttagctttactcctgacgaatatattctcttcca 778

                                                                        
Query: 654  tagtctctcgaagtttctgggtaataacacccangggtttcttctacaactttagagcgc 713
            ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 777  tagtctctcgaagtttctgcgtaataacaccca-gggtttcttctacaactttagagcgc 719

                                      
Query: 714  tgctctgtcttaaccaccttgttctt 739
            ||||||||||||||||||||||||||
Sbjct: 718  tgctctgtcttaaccaccttgttctt 693



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 14   ttcgacgcttgctgcccaggcagtcattaga 44
            ||||||||||||| |||||||||||||||||
Sbjct: 1435 ttcgacgcttgctccccaggcagtcattaga 1405

>gb|AF469493.1| Triticum aestivum HOTR mRNA, partial cds
          Length = 513

 Score =  210 bits (106), Expect = 5e-51
 Identities = 116/118 (98%), Gaps = 1/118 (0%)
 Strand = Plus / Minus

                                                                       
Query: 622 agctttactcctgacgaatatattctcttccatagtctctcgaagtttctgggtaataac 681
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 510 agctttactcctgacgaatatattctcttccatagtctctcgaagtttctgcgtaataac 451

                                                                     
Query: 682 acccangggtttcttctacaactttagagcgctgctctgtcttaaccaccttgttctt 739
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 accca-gggtttcttctacaactttagagcgctgctctgtcttaaccaccttgttctt 394

>gb|BT017214.1| Zea mays clone EL01N0372C04.c mRNA sequence
          Length = 990

 Score =  198 bits (100), Expect = 2e-47
 Identities = 420/523 (80%), Gaps = 3/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 218 gagctggaggcctggaaggtgcctggcctatgtttctccatcagaccggtgagagcggcc 277
           ||||||||||||| ||||||  ||||| |||| ||||||||||| || || || || || 
Sbjct: 631 gagctggaggcctcgaaggtatctggcttatgcttctccatcaggcccgtcagggctgcg 572

                                                                       
Query: 278 tcaaactccttctcgagctccacctcctttgtcatgtactctttcttgagctgcaccttc 337
           |||||||||||||| ||||||| ||||     |||||| ||||||||||||| || ||||
Sbjct: 571 tcaaactccttctccagctccagctccagatccatgtattctttcttgagcttcaacttc 512

                                                                       
Query: 338 ttctcctcatgcccttttattaattcgtctctttcagcctcaaactcctgcacgtcctta 397
           || ||||| ||  |||| || |  || ||||  ||| | ||||||||   ||| ||||| 
Sbjct: 511 ttgtcctcgtggactttgatcagctcatctcgctcaacttcaaactctgccacatccttg 452

                                                                       
Query: 398 acctggcactctatgaaccgctgtacctgttccttccttaggctacgat-tttcagtagt 456
           || ||||| || ||||||  ||| || | ||||||||||||   ||||| ||||| ||||
Sbjct: 451 acttggcaatcaatgaacttctgcacatattccttccttagctgacgatctttca-tagt 393

                                                                       
Query: 457 cccagaatccacatcacactgtctagccttcgcacgctcctcctgcagcaacctctcaaa 516
            |||||||| |||||| |  |||| ||||| |  ||||| ||||||| |||| |||||||
Sbjct: 392 tccagaatcaacatcaaagcgtctggcctttgagcgctcttcctgcaacaacttctcaaa 333

                                                                       
Query: 517 ctcgctttccttgtcttctgtggccttgtgaatgttctcaatctgatcatggaagaactt 576
           ||   |||| || || ||||||||||||||||| | ||||||  || |||| || |  | 
Sbjct: 332 ctgcttttctttatcctctgtggccttgtgaatatcctcaattagaccatgaaaaatttc 273

                                                                       
Query: 577 ttcctgggatttcatctcttcctcatactcagagtgcttctctttagctttactcctgac 636
            |||||||| |||||||||||||| |||||   |||||||||||| ||||||||||| ||
Sbjct: 272 ctcctgggacttcatctcttcctcgtactccatgtgcttctcttttgctttactcctaac 213

                                                                       
Query: 637 gaatatattctcttccatagtctctcgaagtttctgggtaataacacccangggtttctt 696
            |||||||| ||||| |||||||| || || |||||||||| ||||||||   | |||||
Sbjct: 212 aaatatattttcttcaatagtctcacgtagcttctgggtaacaacacccaa-tgattctt 154

                                                      
Query: 697 ctacaactttagagcgctgctctgtcttaaccaccttgttctt 739
           ||||  ||||||| ||||||||||||||||||| |||||||||
Sbjct: 153 ctactgctttagatcgctgctctgtcttaaccatcttgttctt 111

>gb|AY105405.1| Zea mays PCO125857 mRNA sequence
          Length = 1108

 Score =  198 bits (100), Expect = 2e-47
 Identities = 420/523 (80%), Gaps = 3/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 218 gagctggaggcctggaaggtgcctggcctatgtttctccatcagaccggtgagagcggcc 277
           ||||||||||||| ||||||  ||||| |||| ||||||||||| || || || || || 
Sbjct: 750 gagctggaggcctcgaaggtatctggcttatgcttctccatcaggcccgtcagggctgcg 691

                                                                       
Query: 278 tcaaactccttctcgagctccacctcctttgtcatgtactctttcttgagctgcaccttc 337
           |||||||||||||| ||||||| ||||     |||||| ||||||||||||| || ||||
Sbjct: 690 tcaaactccttctccagctccagctccagatccatgtattctttcttgagcttcaacttc 631

                                                                       
Query: 338 ttctcctcatgcccttttattaattcgtctctttcagcctcaaactcctgcacgtcctta 397
           || ||||| ||  |||| || |  || ||||  ||| | ||||||||   ||| ||||| 
Sbjct: 630 ttgtcctcgtggactttgatcagctcatctcgctcaacttcaaactctgccacatccttg 571

                                                                       
Query: 398 acctggcactctatgaaccgctgtacctgttccttccttaggctacgat-tttcagtagt 456
           || ||||| || ||||||  ||| || | ||||||||||||   ||||| ||||| ||||
Sbjct: 570 acttggcaatcaatgaacttctgcacatattccttccttagctgacgatctttca-tagt 512

                                                                       
Query: 457 cccagaatccacatcacactgtctagccttcgcacgctcctcctgcagcaacctctcaaa 516
            |||||||| |||||| |  |||| ||||| |  ||||| ||||||| |||| |||||||
Sbjct: 511 tccagaatcaacatcaaagcgtctggcctttgagcgctcttcctgcaacaacttctcaaa 452

                                                                       
Query: 517 ctcgctttccttgtcttctgtggccttgtgaatgttctcaatctgatcatggaagaactt 576
           ||   |||| || || ||||||||||||||||| | ||||||  || |||| || |  | 
Sbjct: 451 ctgcttttctttatcctctgtggccttgtgaatatcctcaattagaccatgaaaaatttc 392

                                                                       
Query: 577 ttcctgggatttcatctcttcctcatactcagagtgcttctctttagctttactcctgac 636
            |||||||| |||||||||||||| |||||   |||||||||||| ||||||||||| ||
Sbjct: 391 ctcctgggacttcatctcttcctcgtactccatgtgcttctcttttgctttactcctaac 332

                                                                       
Query: 637 gaatatattctcttccatagtctctcgaagtttctgggtaataacacccangggtttctt 696
            |||||||| ||||| |||||||| || || |||||||||| ||||||||   | |||||
Sbjct: 331 aaatatattttcttcaatagtctcacgtagcttctgggtaacaacacccaa-tgattctt 273

                                                      
Query: 697 ctacaactttagagcgctgctctgtcttaaccaccttgttctt 739
           ||||  ||||||| ||||||||||||||||||| |||||||||
Sbjct: 272 ctactgctttagatcgctgctctgtcttaaccatcttgttctt 230

>dbj|AK061975.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A02, full
           insert sequence
          Length = 1214

 Score =  196 bits (99), Expect = 7e-47
 Identities = 371/458 (81%), Gaps = 3/458 (0%)
 Strand = Plus / Minus

                                                                       
Query: 283 ctccttctcgagctccacctcctttgtcatgtactctttcttgagctgcaccttcttctc 342
           ||||||||| ||||| |  ||||| | || |||||| |||||||||| ||||||||||||
Sbjct: 883 ctccttctcaagctcaaattccttcgccaggtactccttcttgagcttcaccttcttctc 824

                                                                       
Query: 343 ctcatgcccttttattaattcgtctctttcagcctcaaactcctgcacgtccttaacctg 402
            ||||||  ||| || | || ||||| ||| || ||||| ||||  || ||||| |||||
Sbjct: 823 ttcatgcaatttgatcagtttgtctcgttcggcttcaaattcctcaacatccttcacctg 764

                                                                       
Query: 403 gcactctatgaaccgctgtacctgttccttccttaggctacgattttcagtagtcccaga 462
           ||| ||||||||   ||| | || |||||||||| | || |||| ||||||| | |||||
Sbjct: 763 gcagtctatgaagttctgaatcttttccttcctttgcctgcgatcttcagtacttccaga 704

                                                                       
Query: 463 atccacatcacactgtctagccttcgcacgctcctcctgcagcaacctctcaaactcgct 522
            || |||||||  ||||||||||| || |||||||| ||||||||| ||||||||| | |
Sbjct: 703 gtcaacatcactttgtctagcctttgctcgctcctcttgcagcaacttctcaaacttgat 644

                                                                       
Query: 523 ttccttgtcttctgtggccttgtgaatgttctcaatctgatcatggaagaacttttcctg 582
           ||| || || ||||||||||||||||| || || || ||||||||||| || |  |||||
Sbjct: 643 ttctttctcctctgtggccttgtgaattttttcgatttgatcatggaaaaattcctcctg 584

                                                                       
Query: 583 ggatttcatctcttcctcatactcagagtgcttctctttagctttactcctgacgaata- 641
           | | |||||||||| |||||||||  ||||||| ||||| |||||| | |  || |||| 
Sbjct: 583 gtacttcatctctttctcatactccaagtgcttttctttggctttatttcgtac-aatag 525

                                                                       
Query: 642 tattctcttccatagtctctcgaagtttctgggtaataacacccangggtttcttctaca 701
           ||||||||||||| ||||| | |||||||||||||| ||||| ||   || || ||||| 
Sbjct: 524 tattctcttccattgtctccctaagtttctgggtaacaacactcaa-tgtatcctctact 466

                                                 
Query: 702 actttagagcgctgctctgtcttaaccaccttgttctt 739
           | ||||||| |||||||| |||||||||  ||||||||
Sbjct: 465 aatttagagtgctgctctttcttaaccattttgttctt 428

>dbj|AK064995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D20, full
            insert sequence
          Length = 2181

 Score =  182 bits (92), Expect = 1e-42
 Identities = 371/459 (80%), Gaps = 4/459 (0%)
 Strand = Plus / Minus

                                                                        
Query: 283  ctccttctcgagctccacctcctttgtcatgtactctttcttgagctgcaccttcttctc 342
            ||||||||| ||||| |  ||||| | || |||||| |||||||||| ||||||||||||
Sbjct: 1830 ctccttctcaagctcaaattccttcgccaggtactccttcttgagcttcaccttcttctc 1771

                                                                        
Query: 343  ctcatgcccttttattaattcgtctctttcagcctcaaactcctgcacgtccttaacctg 402
             ||||||  ||| || | || ||||| ||| || ||||| ||||  || ||||| |||||
Sbjct: 1770 ttcatgcaatttgatcagtttgtctcgttcggcttcaaattcctcaacatccttcacctg 1711

                                                                        
Query: 403  gcactctatgaaccgctgtacctgttccttccttaggctacgattttcagtagtcccaga 462
            ||| ||||||||   ||| | || |||||||||| | || |||| ||||||| | |||||
Sbjct: 1710 gcagtctatgaagttctgaatcttttccttcctttgcctgcgatcttcagtacttccaga 1651

                                                                        
Query: 463  atccacatcacactgtctagccttcgcacgctcctcctgcagcaacctctcaaactcgct 522
             || |||||||  ||||||||||| || |||||||| ||||||||| ||||||||| | |
Sbjct: 1650 gtcaacatcactttgtctagcctttgctcgctcctcttgcagcaacttctcaaacttgat 1591

                                                                        
Query: 523  ttccttgtcttctgtggccttgtgaa-tgttctcaatctgatcatggaagaacttttcct 581
            ||| || || |||||||||||||||| | || || || ||||||||||| || |  ||||
Sbjct: 1590 ttctttctcctctgtggccttgtgaatttttttcgatttgatcatggaaaaattcctcct 1531

                                                                        
Query: 582  gggatttcatctcttcctcatactcagagtgcttctctttagctttactcctgacgaata 641
            || | |||||||||| |||||||||  ||||||| ||||| |||||| | |  || ||||
Sbjct: 1530 ggtacttcatctctttctcatactccaagtgcttttctttggctttatttcgtac-aata 1472

                                                                        
Query: 642  -tattctcttccatagtctctcgaagtttctgggtaataacacccangggtttcttctac 700
             ||||||||||||| ||||| | |||||||||||||| ||||| ||   || || |||||
Sbjct: 1471 gtattctcttccattgtctccctaagtttctgggtaacaacactcaa-tgtatcctctac 1413

                                                   
Query: 701  aactttagagcgctgctctgtcttaaccaccttgttctt 739
             | ||||||| |||||||| |||||||||  ||||||||
Sbjct: 1412 taatttagagtgctgctctttcttaaccattttgttctt 1374

>dbj|AK100699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114M02, full
            insert sequence
          Length = 2570

 Score =  111 bits (56), Expect = 3e-21
 Identities = 218/272 (80%)
 Strand = Plus / Minus

                                                                        
Query: 248  tgtttctccatcagaccggtgagagcggcctcaaactccttctcgagctccacctccttt 307
            ||||||||||||||||  ||||||||||| | || ||||| ||||||||| || ||||||
Sbjct: 2076 tgtttctccatcagacttgtgagagcggcataaagctcctcctcgagctcaacatccttt 2017

                                                                        
Query: 308  gtcatgtactctttcttgagctgcaccttcttctcctcatgcccttttattaattcgtct 367
            | ||| |||||  ||||||  | | |||||||||| || ||   ||| || ||||| |||
Sbjct: 2016 gccatatactccatcttgacgttcgccttcttctcttcgtgtgttttgatcaattcatct 1957

                                                                        
Query: 368  ctttcagcctcaaactcctgcacgtccttaacctggcactctatgaaccgctgtacctgt 427
              |||||| |||||||||| | | ||||| |||||||| |||||||  |  |||| ||||
Sbjct: 1956 tgttcagcatcaaactcctccgcatccttcacctggcaatctatgattctttgtatctgt 1897

                                                                        
Query: 428  tccttccttaggctacgattttcagtagtcccagaatccacatcacactgtctagccttc 487
            |||| ||||||  | | |||||| |||||  |||| || |||||||||| | ||||  | 
Sbjct: 1896 tcctcccttagcttgcaattttctgtagtttcagagtcaacatcacactctatagctctt 1837

                                            
Query: 488  gcacgctcctcctgcagcaacctctcaaactc 519
            ||  ||||||||||||||||||||||||||||
Sbjct: 1836 gctagctcctcctgcagcaacctctcaaactc 1805

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 108/128 (84%)
 Strand = Plus / Plus

                                                                           
Query: 443     cgattttcagtagtcccagaatccacatcacactgtctagccttcgcacgctcctcctgc 502
               |||| ||||||| | ||||| || |||||||  ||||||||||| || |||||||| |||
Sbjct: 5034872 cgatcttcagtacttccagagtcaacatcactttgtctagcctttgctcgctcctcttgc 5034931

                                                                           
Query: 503     agcaacctctcaaactcgctttccttgtcttctgtggccttgtgaatgttctcaatctga 562
               |||||| ||||||||| | |||| || || ||||||||||||||||| || || || |||
Sbjct: 5034932 agcaacttctcaaacttgatttctttctcctctgtggccttgtgaattttttcgatttga 5034991

                       
Query: 563     tcatggaa 570
               ||||||||
Sbjct: 5034992 tcatggaa 5034999



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 134/166 (80%)
 Strand = Plus / Plus

                                                                           
Query: 248     tgtttctccatcagaccggtgagagcggcctcaaactccttctcgagctccacctccttt 307
               ||||||||||||||||  ||||||||||| | || ||||| ||||||||| || ||||||
Sbjct: 5044673 tgtttctccatcagacttgtgagagcggcataaagctcctcctcgagctcaacatccttt 5044732

                                                                           
Query: 308     gtcatgtactctttcttgagctgcaccttcttctcctcatgcccttttattaattcgtct 367
               | ||| |||||  ||||||  | | |||||||||| || ||   ||| || ||||| |||
Sbjct: 5044733 gccatatactccatcttgacgttcgccttcttctcttcgtgtgttttgatcaattcatct 5044792

                                                             
Query: 368     ctttcagcctcaaactcctgcacgtccttaacctggcactctatga 413
                 |||||| |||||||||| | | ||||| |||||||| |||||||
Sbjct: 5044793 tgttcagcatcaaactcctccgcatccttcacctggcaatctatga 5044838



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 107/132 (81%)
 Strand = Plus / Plus

                                                                           
Query: 283     ctccttctcgagctccacctcctttgtcatgtactctttcttgagctgcaccttcttctc 342
               ||||||||| ||||| |  ||||| | || |||||| |||||||||| ||||||||||||
Sbjct: 5034559 ctccttctcaagctcaaattccttcgccaggtactccttcttgagcttcaccttcttctc 5034618

                                                                           
Query: 343     ctcatgcccttttattaattcgtctctttcagcctcaaactcctgcacgtccttaacctg 402
                ||||||  ||| || | || ||||| ||| || ||||| ||||  || ||||| |||||
Sbjct: 5034619 ttcatgcaatttgatcagtttgtctcgttcggcttcaaattcctcaacatccttcacctg 5034678

                           
Query: 403     gcactctatgaa 414
               ||| ||||||||
Sbjct: 5034679 gcagtctatgaa 5034690



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 82/98 (83%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                           
Query: 642     tattctcttccatagtctctcgaagtttctgggtaataacacccangggtttcttctaca 701
               ||||||||||||| ||||| | |||||||||||||| ||||| ||   || || ||||| 
Sbjct: 5035281 tattctcttccattgtctccctaagtttctgggtaacaacactcaa-tgtatcctctact 5035339

                                                     
Query: 702     actttagagcgctgctctgtcttaaccaccttgttctt 739
               | ||||||| |||||||| |||||||||  ||||||||
Sbjct: 5035340 aatttagagtgctgctctttcttaaccattttgttctt 5035377



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                           
Query: 492     gctcctcctgcagcaacctctcaaactc 519
               ||||||||||||||||||||||||||||
Sbjct: 5045068 gctcctcctgcagcaacctctcaaactc 5045095

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 108/128 (84%)
 Strand = Plus / Plus

                                                                           
Query: 443     cgattttcagtagtcccagaatccacatcacactgtctagccttcgcacgctcctcctgc 502
               |||| ||||||| | ||||| || |||||||  ||||||||||| || |||||||| |||
Sbjct: 5034854 cgatcttcagtacttccagagtcaacatcactttgtctagcctttgctcgctcctcttgc 5034913

                                                                           
Query: 503     agcaacctctcaaactcgctttccttgtcttctgtggccttgtgaatgttctcaatctga 562
               |||||| ||||||||| | |||| || || ||||||||||||||||| || || || |||
Sbjct: 5034914 agcaacttctcaaacttgatttctttctcctctgtggccttgtgaattttttcgatttga 5034973

                       
Query: 563     tcatggaa 570
               ||||||||
Sbjct: 5034974 tcatggaa 5034981



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 134/166 (80%)
 Strand = Plus / Plus

                                                                           
Query: 248     tgtttctccatcagaccggtgagagcggcctcaaactccttctcgagctccacctccttt 307
               ||||||||||||||||  ||||||||||| | || ||||| ||||||||| || ||||||
Sbjct: 5044655 tgtttctccatcagacttgtgagagcggcataaagctcctcctcgagctcaacatccttt 5044714

                                                                           
Query: 308     gtcatgtactctttcttgagctgcaccttcttctcctcatgcccttttattaattcgtct 367
               | ||| |||||  ||||||  | | |||||||||| || ||   ||| || ||||| |||
Sbjct: 5044715 gccatatactccatcttgacgttcgccttcttctcttcgtgtgttttgatcaattcatct 5044774

                                                             
Query: 368     ctttcagcctcaaactcctgcacgtccttaacctggcactctatga 413
                 |||||| |||||||||| | | ||||| |||||||| |||||||
Sbjct: 5044775 tgttcagcatcaaactcctccgcatccttcacctggcaatctatga 5044820



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 107/132 (81%)
 Strand = Plus / Plus

                                                                           
Query: 283     ctccttctcgagctccacctcctttgtcatgtactctttcttgagctgcaccttcttctc 342
               ||||||||| ||||| |  ||||| | || |||||| |||||||||| ||||||||||||
Sbjct: 5034541 ctccttctcaagctcaaattccttcgccaggtactccttcttgagcttcaccttcttctc 5034600

                                                                           
Query: 343     ctcatgcccttttattaattcgtctctttcagcctcaaactcctgcacgtccttaacctg 402
                ||||||  ||| || | || ||||| ||| || ||||| ||||  || ||||| |||||
Sbjct: 5034601 ttcatgcaatttgatcagtttgtctcgttcggcttcaaattcctcaacatccttcacctg 5034660

                           
Query: 403     gcactctatgaa 414
               ||| ||||||||
Sbjct: 5034661 gcagtctatgaa 5034672



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 82/98 (83%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                           
Query: 642     tattctcttccatagtctctcgaagtttctgggtaataacacccangggtttcttctaca 701
               ||||||||||||| ||||| | |||||||||||||| ||||| ||   || || ||||| 
Sbjct: 5035263 tattctcttccattgtctccctaagtttctgggtaacaacactcaa-tgtatcctctact 5035321

                                                     
Query: 702     actttagagcgctgctctgtcttaaccaccttgttctt 739
               | ||||||| |||||||| |||||||||  ||||||||
Sbjct: 5035322 aatttagagtgctgctctttcttaaccattttgttctt 5035359



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                           
Query: 492     gctcctcctgcagcaacctctcaaactc 519
               ||||||||||||||||||||||||||||
Sbjct: 5045050 gctcctcctgcagcaacctctcaaactc 5045077

>emb|AL831811.5|CNS08CAO Oryza sativa chromosome 12, . BAC OJ1561_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 91053

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 108/128 (84%)
 Strand = Plus / Plus

                                                                         
Query: 443   cgattttcagtagtcccagaatccacatcacactgtctagccttcgcacgctcctcctgc 502
             |||| ||||||| | ||||| || |||||||  ||||||||||| || |||||||| |||
Sbjct: 78246 cgatcttcagtacttccagagtcaacatcactttgtctagcctttgctcgctcctcttgc 78305

                                                                         
Query: 503   agcaacctctcaaactcgctttccttgtcttctgtggccttgtgaatgttctcaatctga 562
             |||||| ||||||||| | |||| || || ||||||||||||||||| || || || |||
Sbjct: 78306 agcaacttctcaaacttgatttctttctcctctgtggccttgtgaattttttcgatttga 78365

                     
Query: 563   tcatggaa 570
             ||||||||
Sbjct: 78366 tcatggaa 78373



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 134/166 (80%)
 Strand = Plus / Plus

                                                                         
Query: 248   tgtttctccatcagaccggtgagagcggcctcaaactccttctcgagctccacctccttt 307
             ||||||||||||||||  ||||||||||| | || ||||| ||||||||| || ||||||
Sbjct: 88046 tgtttctccatcagacttgtgagagcggcataaagctcctcctcgagctcaacatccttt 88105

                                                                         
Query: 308   gtcatgtactctttcttgagctgcaccttcttctcctcatgcccttttattaattcgtct 367
             | ||| |||||  ||||||  | | |||||||||| || ||   ||| || ||||| |||
Sbjct: 88106 gccatatactccatcttgacgttcgccttcttctcttcgtgtgttttgatcaattcatct 88165

                                                           
Query: 368   ctttcagcctcaaactcctgcacgtccttaacctggcactctatga 413
               |||||| |||||||||| | | ||||| |||||||| |||||||
Sbjct: 88166 tgttcagcatcaaactcctccgcatccttcacctggcaatctatga 88211



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 107/132 (81%)
 Strand = Plus / Plus

                                                                         
Query: 283   ctccttctcgagctccacctcctttgtcatgtactctttcttgagctgcaccttcttctc 342
             ||||||||| ||||| |  ||||| | || |||||| |||||||||| ||||||||||||
Sbjct: 77933 ctccttctcaagctcaaattccttcgccaggtactccttcttgagcttcaccttcttctc 77992

                                                                         
Query: 343   ctcatgcccttttattaattcgtctctttcagcctcaaactcctgcacgtccttaacctg 402
              ||||||  ||| || | || ||||| ||| || ||||| ||||  || ||||| |||||
Sbjct: 77993 ttcatgcaatttgatcagtttgtctcgttcggcttcaaattcctcaacatccttcacctg 78052

                         
Query: 403   gcactctatgaa 414
             ||| ||||||||
Sbjct: 78053 gcagtctatgaa 78064



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 82/98 (83%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                         
Query: 642   tattctcttccatagtctctcgaagtttctgggtaataacacccangggtttcttctaca 701
             ||||||||||||| ||||| | |||||||||||||| ||||| ||   || || ||||| 
Sbjct: 78655 tattctcttccattgtctccctaagtttctgggtaacaacactcaa-tgtatcctctact 78713

                                                   
Query: 702   actttagagcgctgctctgtcttaaccaccttgttctt 739
             | ||||||| |||||||| |||||||||  ||||||||
Sbjct: 78714 aatttagagtgctgctctttcttaaccattttgttctt 78751



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 492   gctcctcctgcagcaacctctcaaactc 519
             ||||||||||||||||||||||||||||
Sbjct: 88441 gctcctcctgcagcaacctctcaaactc 88468

>emb|AL713901.3|CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102_B11 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 112231

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 108/128 (84%)
 Strand = Plus / Plus

                                                                        
Query: 443  cgattttcagtagtcccagaatccacatcacactgtctagccttcgcacgctcctcctgc 502
            |||| ||||||| | ||||| || |||||||  ||||||||||| || |||||||| |||
Sbjct: 5525 cgatcttcagtacttccagagtcaacatcactttgtctagcctttgctcgctcctcttgc 5584

                                                                        
Query: 503  agcaacctctcaaactcgctttccttgtcttctgtggccttgtgaatgttctcaatctga 562
            |||||| ||||||||| | |||| || || ||||||||||||||||| || || || |||
Sbjct: 5585 agcaacttctcaaacttgatttctttctcctctgtggccttgtgaattttttcgatttga 5644

                    
Query: 563  tcatggaa 570
            ||||||||
Sbjct: 5645 tcatggaa 5652



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 134/166 (80%)
 Strand = Plus / Plus

                                                                         
Query: 248   tgtttctccatcagaccggtgagagcggcctcaaactccttctcgagctccacctccttt 307
             ||||||||||||||||  ||||||||||| | || ||||| ||||||||| || ||||||
Sbjct: 15326 tgtttctccatcagacttgtgagagcggcataaagctcctcctcgagctcaacatccttt 15385

                                                                         
Query: 308   gtcatgtactctttcttgagctgcaccttcttctcctcatgcccttttattaattcgtct 367
             | ||| |||||  ||||||  | | |||||||||| || ||   ||| || ||||| |||
Sbjct: 15386 gccatatactccatcttgacgttcgccttcttctcttcgtgtgttttgatcaattcatct 15445

                                                           
Query: 368   ctttcagcctcaaactcctgcacgtccttaacctggcactctatga 413
               |||||| |||||||||| | | ||||| |||||||| |||||||
Sbjct: 15446 tgttcagcatcaaactcctccgcatccttcacctggcaatctatga 15491



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 107/132 (81%)
 Strand = Plus / Plus

                                                                        
Query: 283  ctccttctcgagctccacctcctttgtcatgtactctttcttgagctgcaccttcttctc 342
            ||||||||| ||||| |  ||||| | || |||||| |||||||||| ||||||||||||
Sbjct: 5212 ctccttctcaagctcaaattccttcgccaggtactccttcttgagcttcaccttcttctc 5271

                                                                        
Query: 343  ctcatgcccttttattaattcgtctctttcagcctcaaactcctgcacgtccttaacctg 402
             ||||||  ||| || | || ||||| ||| || ||||| ||||  || ||||| |||||
Sbjct: 5272 ttcatgcaatttgatcagtttgtctcgttcggcttcaaattcctcaacatccttcacctg 5331

                        
Query: 403  gcactctatgaa 414
            ||| ||||||||
Sbjct: 5332 gcagtctatgaa 5343



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 82/98 (83%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                        
Query: 642  tattctcttccatagtctctcgaagtttctgggtaataacacccangggtttcttctaca 701
            ||||||||||||| ||||| | |||||||||||||| ||||| ||   || || ||||| 
Sbjct: 5934 tattctcttccattgtctccctaagtttctgggtaacaacactcaa-tgtatcctctact 5992

                                                  
Query: 702  actttagagcgctgctctgtcttaaccaccttgttctt 739
            | ||||||| |||||||| |||||||||  ||||||||
Sbjct: 5993 aatttagagtgctgctctttcttaaccattttgttctt 6030



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 492   gctcctcctgcagcaacctctcaaactc 519
             ||||||||||||||||||||||||||||
Sbjct: 15721 gctcctcctgcagcaacctctcaaactc 15748

>gb|AY110352.1| Zea mays CL12989_2 mRNA sequence
          Length = 561

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 186/232 (80%), Gaps = 3/232 (1%)
 Strand = Plus / Plus

                                                                       
Query: 288 tctcgagctccacctcctttgtcatgtactctttcttgagctgcaccttcttctcctcat 347
           |||| ||||||| ||||||  ||||||| | ||||||||||| || |||||||||||| |
Sbjct: 328 tctccagctccagctccttcttcatgtattgtttcttgagcttcatcttcttctcctcgt 387

                                                                       
Query: 348 gcccttttattaattcgtctctttcagcctcaaactcctgcacgtccttaacctggcact 407
           | ||||| || |  || || |  ||||| ||||||||   ||| | ||| |||||||| |
Sbjct: 388 ggcctttgatcagctcatcccgctcagcttcaaactctgccacattcttgacctggcaat 447

                                                                       
Query: 408 ctatgaaccgctgtacctgttccttccttaggctacgattttca---gtagtcccagaat 464
           | ||||||  |||||| ||||||||||||||  |||||| |||    ||||| |||||||
Sbjct: 448 caatgaacttctgtacatgttccttccttagcttacgatcttcttcggtagttccagaat 507

                                                               
Query: 465 ccacatcacactgtctagccttcgcacgctcctcctgcagcaacctctcaaa 516
           | |||||| |  |||||||||| |  |||||||||||||||||| |||||||
Sbjct: 508 caacatcaaagcgtctagcctttgagcgctcctcctgcagcaacttctcaaa 559

>dbj|AK064217.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F07, full
            insert sequence
          Length = 1556

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 148/181 (81%), Gaps = 3/181 (1%)
 Strand = Plus / Minus

                                                                        
Query: 560  tgatcatggaagaacttttcctgggatttcatctcttcctcatactcagagtgcttctct 619
            ||||||||||| || |  |||||| | |||||||||| |||||||||  ||||||| |||
Sbjct: 1551 tgatcatggaaaaattcctcctggtacttcatctctttctcatactccaagtgcttttct 1492

                                                                        
Query: 620  ttagctttactcctgacgaata-tattctcttccatagtctctcgaagtttctgggtaat 678
            || |||||| | |  || |||| ||||||||||||| ||||| | |||||||||||||| 
Sbjct: 1491 ttggctttatttcgtac-aatagtattctcttccattgtctccctaagtttctgggtaac 1433

                                                                        
Query: 679  aacacccangggtttcttctacaactttagagcgctgctctgtcttaaccaccttgttct 738
            ||||| ||   || || ||||| | ||||||| |||||||| |||||||||  |||||||
Sbjct: 1432 aacactcaa-tgtatcctctactaatttagagtgctgctctttcttaaccattttgttct 1374

             
Query: 739  t 739
            |
Sbjct: 1373 t 1373

>emb|CR751227.13| Zebrafish DNA sequence from clone DKEY-178D9 in linkage group 3,
             complete sequence
          Length = 114387

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 280   aaactccttctcgagctccacc 301
             ||||||||||||||||||||||
Sbjct: 96349 aaactccttctcgagctccacc 96370

>ref|NM_131117.3| Danio rerio homeo box B3a (hoxb3a), mRNA
          Length = 2107

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 280  aaactccttctcgagctccacc 301
            ||||||||||||||||||||||
Sbjct: 1409 aaactccttctcgagctccacc 1388

>emb|AL645782.2| Zebrafish DNA sequence from clone BUSM1-254O17 in linkage group 3
             Contains the hoxb1a, hoxb2a, hoxb3a, hoxb4a, hoxb5a,
             hoxb6a, hoxb7a and hob8a genes and three CpG islands,
             complete sequence
          Length = 119385

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 280   aaactccttctcgagctccacc 301
             ||||||||||||||||||||||
Sbjct: 59341 aaactccttctcgagctccacc 59320

>gb|BC095559.1| Danio rerio homeo box B3a, mRNA (cDNA clone MGC:111819
            IMAGE:7428365), complete cds
          Length = 2107

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 280  aaactccttctcgagctccacc 301
            ||||||||||||||||||||||
Sbjct: 1409 aaactccttctcgagctccacc 1388

>tpg|BK005082.1| TPA: TPA_exp: Danio rerio Hoxb3a variant 2 mRNA, complete cds
          Length = 1728

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 280  aaactccttctcgagctccacc 301
            ||||||||||||||||||||||
Sbjct: 1071 aaactccttctcgagctccacc 1050

>tpg|BK005081.1| TPA: TPA_exp: Danio rerio Hoxb3a variant 1 mRNA, complete cds
          Length = 1646

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 280 aaactccttctcgagctccacc 301
           ||||||||||||||||||||||
Sbjct: 989 aaactccttctcgagctccacc 968

>emb|AJ537509.1|DRE537509 Danio rerio mRNA for Hoxb3a protein
          Length = 1254

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 280 aaactccttctcgagctccacc 301
           ||||||||||||||||||||||
Sbjct: 597 aaactccttctcgagctccacc 576

>gb|DQ481665.1| Takifugu rubripes HoxBa gene cluster, complete sequence
          Length = 294716

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 516   actcgctttccttgtcttctg 536
             |||||||||||||||||||||
Sbjct: 57577 actcgctttccttgtcttctg 57557

>gb|AC126688.4| Mus musculus BAC clone RP23-152P20 from chromosome 7, complete sequence
          Length = 205673

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 232   gaaggtgcctggcctatgttt 252
             |||||||||||||||||||||
Sbjct: 22362 gaaggtgcctggcctatgttt 22342

>gb|AC123935.4| Mus musculus BAC clone RP23-354J3 from chromosome 13, complete sequence
          Length = 219370

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 328    ctgcaccttcttctcctcatg 348
              |||||||||||||||||||||
Sbjct: 110179 ctgcaccttcttctcctcatg 110199

>gb|AC101690.7| Mus musculus chromosome 7, clone RP23-218E6, complete sequence
          Length = 229964

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 232    gaaggtgcctggcctatgttt 252
              |||||||||||||||||||||
Sbjct: 221648 gaaggtgcctggcctatgttt 221628

>gb|AC112717.5| Homo sapiens BAC clone RP11-481H16 from 4, complete sequence
          Length = 189406

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 520   gctttccttgtcttctgtggc 540
             |||||||||||||||||||||
Sbjct: 40011 gctttccttgtcttctgtggc 39991

>gb|AC093834.3| Homo sapiens BAC clone RP11-423L1 from 4, complete sequence
          Length = 177582

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 520   gctttccttgtcttctgtggc 540
             |||||||||||||||||||||
Sbjct: 33188 gctttccttgtcttctgtggc 33168

>gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, complete sequence
          Length = 132573

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 217   ggagctggaggcctggaaggtgcct 241
             |||| ||||||||||||||||||||
Sbjct: 24030 ggagttggaggcctggaaggtgcct 24054

>gb|AC135050.3| Homo sapiens chromosome 16 clone RP11-196G11, complete sequence
          Length = 182230

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 370    ttcagcctcaaactcctgcac 390
              |||||||||||||||||||||
Sbjct: 127413 ttcagcctcaaactcctgcac 127433

>dbj|AP001831.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-317J19, complete
             sequence
          Length = 185919

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   gcaaatctcagatattgctct 194
             |||||||||||||||||||||
Sbjct: 14369 gcaaatctcagatattgctct 14389

>emb|BX537299.8| Mouse DNA sequence from clone RP23-412I17 on chromosome 7, complete
             sequence
          Length = 140968

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 328   ctgcaccttcttctcctcatg 348
             |||||||||||||||||||||
Sbjct: 22649 ctgcaccttcttctcctcatg 22629

>emb|AL844582.7| Mouse DNA sequence from clone RP23-234C7 on chromosome 2, complete
              sequence
          Length = 221723

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 555    caatctgatcatggaagaact 575
              |||||||||||||||||||||
Sbjct: 159142 caatctgatcatggaagaact 159162


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,599,928
Number of Sequences: 3902068
Number of extensions: 7599928
Number of successful extensions: 177900
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 177687
Number of HSP's gapped (non-prelim): 200
length of query: 739
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 716
effective length of database: 17,143,297,704
effective search space: 12274601156064
effective search space used: 12274601156064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)