ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
2dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
4dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
5gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA,... 121 3e-24
6gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence 107 5e-20
7gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA,... 107 5e-20
8gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 50 0.009
9gb|AC026413.5|AC026413 Homo sapiens chromosome 5 clone CTD-2030B... 44 0.57
10emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 42 2.2
11gb|AC020701.8| Homo sapiens BAC clone RP11-200K10 from 4, comple... 42 2.2
12gb|AC027613.6| Homo sapiens BAC clone RP11-166J5 from 4, complet... 42 2.2
13ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 8.8
14emb|AL672291.2| Human DNA sequence from clone XX-178 on chromoso... 40 8.8
15emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in ... 40 8.8
16emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-bindin... 40 8.8
17emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in ... 40 8.8
18gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, compl... 40 8.8
19gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, comp... 40 8.8
20gb|AF229541.1|AF229541 Homo sapiens clone 1qtel949_c126t3_c17t7 ... 40 8.8
21gb|AC026333.28| Homo sapiens 12 BAC RP11-324E6 (Roswell Park Can... 40 8.8
22gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, comple... 40 8.8
23emb|AM050329.1| Unidentified microorganism phagemid clone pBKR.34 40 8.8 
>dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090L01, full
            insert sequence
          Length = 3709

 Score =  202 bits (102), Expect = 1e-48
 Identities = 186/214 (86%)
 Strand = Plus / Minus

                                                                        
Query: 333  ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 392
            |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 3398 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 3339

                                                                        
Query: 393  cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 452
            |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 3338 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 3279

                                                                        
Query: 453  ctcgggacttccggctcacacctcaccggagtttcaccagtcggctcatagtccctgtag 512
            ||||| || ||||||||  |||||||||||||||| || |||||||| |||||| |||||
Sbjct: 3278 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtccttgtag 3219

                                              
Query: 513  ctgctttggaaagccttctcggcatgtgtgttga 546
            ||||| |||||||| || ||||| || |||||||
Sbjct: 3218 ctgctctggaaagcgttgtcggcgtgggtgttga 3185
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>dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H01, full
            insert sequence
          Length = 1784

 Score =  202 bits (102), Expect = 1e-48
 Identities = 186/214 (86%)
 Strand = Plus / Minus

                                                                        
Query: 333  ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 392
            |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 1478 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 1419

                                                                        
Query: 393  cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 452
            |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 1418 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 1359

                                                                        
Query: 453  ctcgggacttccggctcacacctcaccggagtttcaccagtcggctcatagtccctgtag 512
            ||||| || ||||||||  |||||||||||||||| || |||||||| |||||| |||||
Sbjct: 1358 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtccttgtag 1299

                                              
Query: 513  ctgctttggaaagccttctcggcatgtgtgttga 546
            ||||| |||||||| || ||||| || |||||||
Sbjct: 1298 ctgctctggaaagcgttgtcggcgtgggtgttga 1265
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  170 bits (86), Expect = 4e-39
 Identities = 152/174 (87%)
 Strand = Plus / Plus

                                                                            
Query: 333      ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 392
                |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 27935778 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 27935837

                                                                            
Query: 393      cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 452
                |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 27935838 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 27935897

                                                                      
Query: 453      ctcgggacttccggctcacacctcaccggagtttcaccagtcggctcatagtcc 506
                ||||| || ||||||||  |||||||||||||||| || |||||||| ||||||
Sbjct: 27935898 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtcc 27935951
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>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0562A06
          Length = 154198

 Score =  170 bits (86), Expect = 4e-39
 Identities = 152/174 (87%)
 Strand = Plus / Plus

                                                                         
Query: 333   ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 392
             |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 13270 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 13329

                                                                         
Query: 393   cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 452
             |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 13330 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 13389

                                                                   
Query: 453   ctcgggacttccggctcacacctcaccggagtttcaccagtcggctcatagtcc 506
             ||||| || ||||||||  |||||||||||||||| || |||||||| ||||||
Sbjct: 13390 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtcc 13443
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>gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA, partial cds
          Length = 3385

 Score =  121 bits (61), Expect = 3e-24
 Identities = 130/153 (84%)
 Strand = Plus / Minus

                                                                        
Query: 373  attcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgca 432
            ||||||| |||||||||||||||||||| | ||||| || ||| || ||||| ||||| |
Sbjct: 3092 attcatacggatggttctcacggaactcgttcatcaaggtctccatgggcatggctcgaa 3033

                                                                        
Query: 433  acgactcgatcgtgcctttgctcgggacttccggctcacacctcaccggagtttcaccag 492
             ||||||||||| ||||||||| || || | ||||||| ||||||| ||||||||||| |
Sbjct: 3032 gcgactcgatcgagcctttgcttggcacgttcggctcaaacctcactggagtttcacccg 2973

                                             
Query: 493  tcggctcatagtccctgtagctgctttggaaag 525
            ||||||| || ||| |||| ||| |||||||||
Sbjct: 2972 tcggctcgtaatccttgtaactggtttggaaag 2940
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>gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence
          Length = 2117

 Score =  107 bits (54), Expect = 5e-20
 Identities = 135/162 (83%)
 Strand = Plus / Minus

                                                                        
Query: 374  ttcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgcaa 433
            |||||| |||||||||||||||||||||| ||||| || ||| |  ||||| ||||||| 
Sbjct: 1902 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 1843

                                                                        
Query: 434  cgactcgatcgtgcctttgctcgggacttccggctcacacctcaccggagtttcaccagt 493
            ||| || |||| ||||||||| || || | ||||||| ||||||||||||||||||| | 
Sbjct: 1842 cgattcaatcgagcctttgcttggcacgttcggctcagacctcaccggagtttcacctga 1783

                                                      
Query: 494  cggctcatagtccctgtagctgctttggaaagccttctcggc 535
             || || |||||| |||| ||| |||||| |||||| |||||
Sbjct: 1782 gggttcgtagtccttgtaactggtttggagagccttatcggc 1741
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>gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA, partial cds
          Length = 3514

 Score =  107 bits (54), Expect = 5e-20
 Identities = 135/162 (83%)
 Strand = Plus / Minus

                                                                        
Query: 374  ttcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgcaa 433
            |||||| |||||||||||||||||||||| ||||| || ||| |  ||||| ||||||| 
Sbjct: 3176 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 3117

                                                                        
Query: 434  cgactcgatcgtgcctttgctcgggacttccggctcacacctcaccggagtttcaccagt 493
            ||| || |||| ||||||||| || || | ||||||| ||||||||||||||||||| | 
Sbjct: 3116 cgattcaatcgagcctttgcttggcacgttcggctcagacctcaccggagtttcacctga 3057

                                                      
Query: 494  cggctcatagtccctgtagctgctttggaaagccttctcggc 535
             || || |||||| |||| ||| |||||| |||||| |||||
Sbjct: 3056 gggttcgtagtccttgtaactggtttggagagccttgtcggc 3015
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>gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-33e9, complete sequence
          Length = 127190

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 291    aaaagaagtattatcattgtttctc 315
              |||||||||||||||||||||||||
Sbjct: 116413 aaaagaagtattatcattgtttctc 116437
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>gb|AC026413.5|AC026413 Homo sapiens chromosome 5 clone CTD-2030B15, complete sequence
          Length = 117928

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 11     atacattnctagcaggaatgcaaaa 35
              ||||||| |||||||||||||||||
Sbjct: 100006 atacatttctagcaggaatgcaaaa 100030
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>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              7/17
          Length = 348813

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 297    agtattatcattgtttctcag 317
              |||||||||||||||||||||
Sbjct: 161975 agtattatcattgtttctcag 161995
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>gb|AC020701.8| Homo sapiens BAC clone RP11-200K10 from 4, complete sequence
          Length = 129572

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 11     atacattnctagcaggaatgcaaa 34
              ||||||| ||||||||||||||||
Sbjct: 127925 atacattgctagcaggaatgcaaa 127902
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>gb|AC027613.6| Homo sapiens BAC clone RP11-166J5 from 4, complete sequence
          Length = 154163

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 11  atacattnctagcaggaatgcaaa 34
           ||||||| ||||||||||||||||
Sbjct: 353 atacattgctagcaggaatgcaaa 330
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>ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03374.1)
            partial mRNA
          Length = 4185

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 424  tcgctcgcaacgactcgatc 443
            ||||||||||||||||||||
Sbjct: 3898 tcgctcgcaacgactcgatc 3879
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>emb|AL672291.2| Human DNA sequence from clone XX-178 on chromosome 1 Contains two novel
             genes (FLJ22301, FLJ20531), the 5' end of a novel gene and
             three CpG islands, complete sequence
          Length = 31238

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   ctgaagtctgtccagagtgg 569
             ||||||||||||||||||||
Sbjct: 10456 ctgaagtctgtccagagtgg 10475
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>emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in linkage group 8,
             complete sequence
          Length = 170195

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   ttacactgcacacagaaaag 295
             ||||||||||||||||||||
Sbjct: 96460 ttacactgcacacagaaaag 96441
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>emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-binding domain DNA sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 actgcacacagaaaagaagt 299
           ||||||||||||||||||||
Sbjct: 285 actgcacacagaaaagaagt 304
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>emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in linkage group 2, complete
              sequence
          Length = 146969

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     aattttttacaagaatattc 70
              ||||||||||||||||||||
Sbjct: 120050 aattttttacaagaatattc 120069



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    aattttttacaagaatattc 148
              ||||||||||||||||||||
Sbjct: 120050 aattttttacaagaatattc 120069
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>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence
          Length = 160545

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 169    atacattctagcaagaatgcaaaa 192
              ||||||||||| ||||||||||||
Sbjct: 102314 atacattctagtaagaatgcaaaa 102291
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>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence
          Length = 180535

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 169   atacattctagcaagaatgcaaaa 192
             ||||||||||| ||||||||||||
Sbjct: 30566 atacattctagtaagaatgcaaaa 30589
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>gb|AF229541.1|AF229541 Homo sapiens clone 1qtel949_c126t3_c17t7 sequence
          Length = 739

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 550 ctgaagtctgtccagagtgg 569
           ||||||||||||||||||||
Sbjct: 256 ctgaagtctgtccagagtgg 275
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>gb|AC026333.28| Homo sapiens 12 BAC RP11-324E6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 204793

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 564    gagtggttgtcctgcaaatgctgt 587
              |||||| |||||||||||||||||
Sbjct: 141251 gagtggatgtcctgcaaatgctgt 141228
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>gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, complete sequence
          Length = 183666

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   gaaaagaagtattatcattg 309
             ||||||||||||||||||||
Sbjct: 96583 gaaaagaagtattatcattg 96564
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>emb|AM050329.1| Unidentified microorganism phagemid clone pBKR.34
          Length = 5700

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  aaaagaagtattatcattgt 310
            ||||||||||||||||||||
Sbjct: 3635 aaaagaagtattatcattgt 3654


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,501,405
Number of Sequences: 3902068
Number of extensions: 5501405
Number of successful extensions: 151410
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151346
Number of HSP's gapped (non-prelim): 64
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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