ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19d23 |
|---|---|
| Clone Library Name | barley_pub |
>YOU2_CAEEL (P30629) Hypothetical protein ZK637.2| Length = 143 Score = 58.9 bits (141), Expect = 7e-09 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 8/102 (7%) Frame = -1 Query: 451 LQKAYFKCAHDCFDRRQS-QEGITNCVENCGVPALSANNVVETEMAKFQERLNRSLMVCQ 275 +QK+ F+C+ C D +++ ++ + NCVE+C A +E E+ Q++L+R M C Sbjct: 32 MQKSMFQCSARCCDNKKTTRDAVENCVESCNDGMKKAQGYLEKELGGLQDQLSRCAMTCY 91 Query: 274 DKF------EAAKLQKMKTDATNE-LESCVNRSIDDSIRVLP 170 DK + K + + + NE L+SCV+ DD I+++P Sbjct: 92 DKLVQQFGPDVNKYSESQKLSFNEKLDSCVSVCADDHIKLIP 133
>RPOD_TREPA (O83506) RNA polymerase sigma factor rpoD (Sigma-A) (Major| vegetative sigma factor) Length = 611 Score = 33.1 bits (74), Expect = 0.43 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N L+ +KFE K K T AT + + RSI D +IRV H++EQI Sbjct: 407 NIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQI 458
>YJD7_YEAST (P47056) Hypothetical 24.8 kDa protein in NSP1-TAD2 intergenic| region Length = 224 Score = 32.7 bits (73), Expect = 0.56 Identities = 17/48 (35%), Positives = 28/48 (58%) Frame = -1 Query: 343 NNVVETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNR 200 NN ETE K + LNR++ + K+ ++K KT +T + ES +N+ Sbjct: 104 NNTFETETGKLTKGLNRAVNISPFKY----IKKFKTVSTKKFESLLNK 147
>RPOD_RHIME (Q59753) RNA polymerase sigma factor rpoD (Sigma-A) (Major| vegetative sigma factor) Length = 684 Score = 32.3 bits (72), Expect = 0.73 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQIKSAI 140 N LM DKFE + K T AT + + RSI D +IR+ H++E I + Sbjct: 480 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIV 535
>RPOD_AGRT5 (P33452) RNA polymerase sigma factor rpoD (Sigma-A) (Major| vegetative sigma factor) Length = 684 Score = 32.3 bits (72), Expect = 0.73 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQIKSAI 140 N LM DKFE + K T AT + + RSI D +IR+ H++E I + Sbjct: 480 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIV 535
>RPOD_RHOCA (P46400) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 674 Score = 32.3 bits (72), Expect = 0.73 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQIKSAI 140 N LM DKFE + K T AT + + RSI D +IR+ H++E I + Sbjct: 470 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLV 525
>RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 652 Score = 32.3 bits (72), Expect = 0.73 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQIKSAI 140 N LM DKFE + K T AT + + RSI D +IR+ H++E I + Sbjct: 448 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIV 503
>HRDA_STRCO (P18182) RNA polymerase principal sigma factor hrdA| Length = 396 Score = 32.0 bits (71), Expect = 0.95 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQIKSAINMK* 128 N L+ +KF+ A+ K T AT + ++R++ D +IRV H+VE I + ++ Sbjct: 193 NLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQR 252 Query: 127 RNQKLRNC 104 R + R C Sbjct: 253 RMLQERGC 260
>RPOD_SALTY (P0A2E3) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 411 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 462
>RPOD_SALTI (P0A2E4) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 411 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 462
>RPOD_PSEFL (P52326) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 411 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 462
>RPOD_BUCAI (P57163) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 612 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 408 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 459
>RPOD_BUCBP (Q89B10) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 609 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 405 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 456
>LRC48_HUMAN (Q9H069) Leucine-rich repeat-containing protein 48| Length = 523 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/68 (27%), Positives = 37/68 (54%) Frame = -1 Query: 325 EMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQIKS 146 ++AKF+E+ SL +++ E ++KM + + + ++ D + + LVEQ++ Sbjct: 323 KIAKFEEKHLSSLSAIREELELPNIEKMILECSAD----ISELFDALMTLEMQLVEQLEE 378 Query: 145 AINMK*RN 122 INM RN Sbjct: 379 TINMFERN 386
>RPOD_XANCP (Q8P4H2) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 624 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 419 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 470
>RPOD_SERMA (P43344) RNA polymerase sigma factor rpoD (Sigma-70) (Fragment)| Length = 215 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 11 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 62
>RPOD_XANAC (Q8PG33) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 625 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 420 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 471
>RPOD_NEIGO (P52325) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 642 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 433 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 484
>RPOD_SHEVI (O24744) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 614 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 410 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 461
>RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 614 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 410 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 461
>RPOD_PSEAE (P26480) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 617 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 413 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 464
>RPOD_HAEIN (P43766) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 629 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 425 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 476
>RPOD_ECOLI (P00579) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 613 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 409 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 460
>RPOD_BUCAP (P32001) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 617 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N LM DKFE + K T AT + + RSI D +IR+ H++E I Sbjct: 413 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 464
>RPOD_BORBU (P52323) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 631 Score = 31.2 bits (69), Expect = 1.6 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N L+ +KFE + K T AT + + RSI D +IRV H++EQI Sbjct: 425 NIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQI 476
>HRDD_STRGR (Q59914) RNA polymerase principal sigma factor hrdD| Length = 332 Score = 30.8 bits (68), Expect = 2.1 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N L+ +KF+ AK K T AT + + RSI D +IR+ HLVE++ Sbjct: 130 NAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEEL 181
>TIM10_YEAST (P87108) Mitochondrial import inner membrane translocase subunit| TIM10 (Mitochondrial intermembrane protein MRS11) Length = 93 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/68 (23%), Positives = 28/68 (41%) Frame = -1 Query: 499 AAQKHLEGVQDHVNFTLQKAYFKCAHDCFDRRQSQEGITNCVENCGVPALSANNVVETEM 320 AA+ L+ V D N + Y KC + + + + ++C++ C N V M Sbjct: 21 AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENM 80 Query: 319 AKFQERLN 296 K + N Sbjct: 81 QKMGQSFN 88
>CRNA_EMENI (P22152) Nitrate transporter (Nitrate permease)| Length = 507 Score = 30.4 bits (67), Expect = 2.8 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +1 Query: 256 LLLQTCLGRPSTSDSTFPGTWPSQSQRHCWQKERAHHSSQHN 381 L++ LG T D T G W S+RH W KE +S+ N Sbjct: 207 LIVAAALGMLFTCDDTPTGKW---SERHIWMKEDTQTASKGN 245
>GLYM_ARATH (Q9SZJ5) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 30.0 bits (66), Expect = 3.6 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = -1 Query: 364 GVPALSANNVVETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDS 185 G PAL++ VE + AK E ++++ + A+ K+K D + +ES + +I Sbjct: 432 GTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLK-DFVSAMES--SSTIQSE 488 Query: 184 IRVLPHLVEQ 155 I L H VE+ Sbjct: 489 IAKLRHEVEE 498
>TIM8B_HUMAN (Q9Y5J9) Mitochondrial import inner membrane translocase subunit| Tim8 B (Deafness dystonia protein 2) (DDP-like protein) Length = 83 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/61 (22%), Positives = 31/61 (50%) Frame = -1 Query: 331 ETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQI 152 E + A+F +++ + +C DK ++ + N L SCV+R ID ++ + + + Sbjct: 19 EQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIV 78 Query: 151 K 149 + Sbjct: 79 Q 79
>TIM8B_BOVIN (Q3SZ93) Mitochondrial import inner membrane translocase subunit| Tim8 B Length = 83 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/61 (22%), Positives = 31/61 (50%) Frame = -1 Query: 331 ETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQI 152 E + A+F +++ + +C DK ++ + N L SCV+R ID ++ + + + Sbjct: 19 EQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIV 78 Query: 151 K 149 + Sbjct: 79 Q 79
>TIM8A_RAT (Q9WVA1) Mitochondrial import inner membrane translocase subunit| Tim8 A (Deafness dystonia protein 1 homolog) Length = 97 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -1 Query: 334 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQ 155 VET+ +FQ+ +++ +C +K K+ + A +CV R ID S +L L + Sbjct: 25 VETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQT 84 Query: 154 IKS 146 KS Sbjct: 85 QKS 87
>TIM8A_MOUSE (Q9WVA2) Mitochondrial import inner membrane translocase subunit| Tim8 A (Deafness dystonia protein 1 homolog) Length = 97 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -1 Query: 334 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQ 155 VET+ +FQ+ +++ +C +K K+ + A +CV R ID S +L L + Sbjct: 25 VETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQT 84 Query: 154 IKS 146 KS Sbjct: 85 QKS 87
>TIM8A_HUMAN (O60220) Mitochondrial import inner membrane translocase subunit| Tim8 A (Deafness dystonia protein 1) (X-linked deafness dystonia protein) Length = 97 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -1 Query: 334 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQ 155 VET+ +FQ+ +++ +C +K K+ + A +CV R ID S +L L + Sbjct: 25 VETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQT 84 Query: 154 IKS 146 KS Sbjct: 85 QKS 87
>TIM8A_BOVIN (Q3ZBS8) Mitochondrial import inner membrane translocase subunit| Tim8 A Length = 97 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -1 Query: 334 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQ 155 VET+ +FQ+ +++ +C +K K+ + A +CV R ID S +L L + Sbjct: 25 VETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQT 84 Query: 154 IKS 146 KS Sbjct: 85 QKS 87
>LRC48_MACFA (Q4R6X9) Leucine-rich repeat-containing protein 48| Length = 523 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/68 (26%), Positives = 37/68 (54%) Frame = -1 Query: 325 EMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQIKS 146 ++A+F+E+ SL +++ E ++KM + + ++ N + + + LVEQ++ Sbjct: 323 KIAQFEEKHLSSLSAIREESELPNIEKMILECSADVSELFN----ELMMLEMQLVEQLEE 378 Query: 145 AINMK*RN 122 INM RN Sbjct: 379 TINMFERN 386
>GTHB1_CORAU (P48250) Gonadotropin beta-1 subunit precursor (Gonadotropin beta-I| chain) (GTH-I-beta) Length = 137 Score = 29.6 bits (65), Expect = 4.7 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 250 GALLLQTCLGRPSTSDSTFPGTWPSQSQRHCWQKE 354 G++ + TC G T+D + TW +SQ C KE Sbjct: 48 GSITITTCAGLCETTDLNYQSTWLPRSQGACNFKE 82
>HISX_CAMJE (Q9PM77) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 428 Score = 29.6 bits (65), Expect = 4.7 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 10/87 (11%) Frame = -1 Query: 424 HDCFDRRQSQEGITNCVENCGVPALSANN----VVETEMAKFQERLNRSLMVCQDKFEAA 257 +D D +Q +E + PA+SA + +V + + + QE+ +++L+ KF+ A Sbjct: 6 YDNLDEKQKEEALKR-------PAISAKDEISKIVSSIIKEVQEKGDKALIEQALKFDKA 58 Query: 256 KLQKMK------TDATNELESCVNRSI 194 ++ K+K T A+N L+ + +I Sbjct: 59 EISKIKITQEEITQASNRLDKDLQEAI 85
>TIM8B_RAT (P62078) Mitochondrial import inner membrane translocase subunit| Tim8 B (Deafness dystonia protein 2 homolog) Length = 83 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/52 (26%), Positives = 28/52 (53%) Frame = -1 Query: 331 ETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRV 176 E + A+F +++ + +C DK ++ + N L SCV+R ID ++ + Sbjct: 19 EQQKAQFTAQVHHFMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAI 70
>TIM8B_MOUSE (P62077) Mitochondrial import inner membrane translocase subunit| Tim8 B (Deafness dystonia protein 2 homolog) Length = 83 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/52 (26%), Positives = 28/52 (53%) Frame = -1 Query: 331 ETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRV 176 E + A+F +++ + +C DK ++ + N L SCV+R ID ++ + Sbjct: 19 EQQKAQFTAQVHHFMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAI 70
>TIM8A_XENLA (Q66L32) Mitochondrial import inner membrane translocase subunit| Tim8 A Length = 94 Score = 29.6 bits (65), Expect = 4.7 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = -1 Query: 334 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRV 176 VE + A+F +++ + VC DK K+ + + L SCV+R ID ++ + Sbjct: 29 VEQQKAQFTAQVHNFMDVCWDKCIDRPGNKLDSRTESCLVSCVDRFIDTTLSI 81
>TIM8A_FUGRU (Q90YI5) Mitochondrial import inner membrane translocase subunit| Tim8 A Length = 90 Score = 29.6 bits (65), Expect = 4.7 Identities = 20/71 (28%), Positives = 33/71 (46%) Frame = -1 Query: 358 PALSANNVVETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIR 179 P L +E++ +FQ+ ++ VC DK K+ + A +CV R ID S Sbjct: 10 PQLQQFIEIESQKQRFQQLVHHMTEVCWDKCMDKPGPKLDSRAEMCFVNCVERFIDTSQF 69 Query: 178 VLPHLVEQIKS 146 +L L + +S Sbjct: 70 ILNRLEQTQRS 80
>GTHB1_ONCMA (P48252) Gonadotropin beta-1 subunit precursor (Gonadotropin beta-I| chain) (GTH-I-beta) Length = 137 Score = 29.3 bits (64), Expect = 6.2 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 250 GALLLQTCLGRPSTSDSTFPGTWPSQSQRHCWQKE 354 G++ + TC G T+D + TW +SQ C KE Sbjct: 48 GSITITTCAGLCETTDLNYQSTWLPRSQGVCNFKE 82
>GTHB1_ONCKE (P10257) Gonadotropin beta-1 subunit precursor (Gonadotropin beta-I| chain) (GTH-I-beta) Length = 137 Score = 29.3 bits (64), Expect = 6.2 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 250 GALLLQTCLGRPSTSDSTFPGTWPSQSQRHCWQKE 354 G++ + TC G T+D + TW +SQ C KE Sbjct: 48 GSITITTCAGLCETTDLNYQSTWLPRSQGVCNFKE 82
>TIM8_CAEEL (Q9N408) Mitochondrial import inner membrane translocase subunit| tim-8 Length = 83 Score = 29.3 bits (64), Expect = 6.2 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = -1 Query: 331 ETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNE--LESCVNRSIDDSIRVLPHL 164 ET+ KF E+++ C D A K D + +++CVNR ID S ++ HL Sbjct: 18 ETQRQKFTEQVHTLTGRCWDVCFADYRPPSKMDGKTQTCIQNCVNRMIDASNFMVEHL 75
>TRF2_THEVO (Q978U3) Tricorn protease-interacting factor F2 (EC 3.4.11.-)| Length = 783 Score = 28.9 bits (63), Expect = 8.1 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -1 Query: 334 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRV 176 V+ + AK SL D A + K +TD NEL N+ DD IRV Sbjct: 610 VDEDFAKELSPQFASLSEDPDLALAKAVAKARTDGLNELIDAANKYTDDEIRV 662
>HRDD_STRVF (Q60012) RNA polymerase principal sigma factor hrdD| Length = 332 Score = 28.9 bits (63), Expect = 8.1 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N L+ +KF+ K K T AT + + RSI D +IR+ HLVE++ Sbjct: 130 NAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEEL 181
>HRDD_STRCO (P18249) RNA polymerase principal sigma factor hrdD| Length = 332 Score = 28.9 bits (63), Expect = 8.1 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = -1 Query: 298 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 152 N L+ +KF+ K K T AT + + RSI D +IR+ HLVE++ Sbjct: 130 NAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEEL 181
>OSBL1_MOUSE (Q91XL9) Oxysterol-binding protein-related protein 1 (OSBP-related| protein 1) (ORP-1) Length = 950 Score = 28.9 bits (63), Expect = 8.1 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = +3 Query: 414 KQSCAHLKYAFCRVKLTWSCTPS-RCF 491 +Q C HL A C VK T SC S RCF Sbjct: 278 RQGCKHLTQAVCTVKPTDSCLFSIRCF 304 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,502,625 Number of Sequences: 219361 Number of extensions: 1378055 Number of successful extensions: 4519 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 4389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4516 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
