ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19d22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CASR_RAT (P48442) Extracellular calcium-sensing receptor precurs... 31 3.1
2DCHS_BOVIN (Q5EA83) Histidine decarboxylase (EC 4.1.1.22) (HDC) 30 5.3
3ICP4_GAHVG (Q02362) Trans-acting transcriptional activator prote... 30 6.9
4CASR_MOUSE (Q9QY96) Extracellular calcium-sensing receptor precu... 30 6.9
5CASR_HUMAN (P41180) Extracellular calcium-sensing receptor precu... 30 6.9

>CASR_RAT (P48442) Extracellular calcium-sensing receptor precursor (CaSR)|
           (Parathyroid Cell calcium-sensing receptor)
          Length = 1079

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 221 LLMVFDTYVPEDFHSETWPLVNGLPLQKCLIFVYCIVRQLYLNIKLY 81
           +L+VF+  +P  FH + W    GL LQ  L+F+   ++ L   I LY
Sbjct: 702 VLLVFEAKIPTSFHRKWW----GLNLQFLLVFLCTFMQILICIIWLY 744



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>DCHS_BOVIN (Q5EA83) Histidine decarboxylase (EC 4.1.1.22) (HDC)|
          Length = 658

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +2

Query: 239 SVTTLFRFHDQMLADQELPQEKAAICSANLGSQPSQTCPSPLGWNTLHQTRRAHRWMDHL 418
           +VT+ F   D +L D  L Q+ A +    + SQ   + PSP G N + QTR        +
Sbjct: 449 TVTSQFTTRDDILRDWNLIQDAATL----ILSQHCTSQPSPQGANLILQTRGPRALAKEM 504

Query: 419 SSP 427
           S P
Sbjct: 505 SFP 507



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>ICP4_GAHVG (Q02362) Trans-acting transcriptional activator protein ICP4|
           (Immediate-early protein IE175)
          Length = 1415

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 328 GQPALPNMPISTWLEHATPNTTSPPVDGP 414
           GQP  P +P+  W   +T    SPP  GP
Sbjct: 52  GQPMFPPLPVPDWNNPSTDWRPSPPRSGP 80



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>CASR_MOUSE (Q9QY96) Extracellular calcium-sensing receptor precursor (CaSR)|
           (Parathyroid Cell calcium-sensing receptor)
          Length = 1079

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 221 LLMVFDTYVPEDFHSETWPLVNGLPLQKCLIFVYCIVRQLYLNIKLY 81
           +L+VF+  +P  FH + W    GL LQ  L+F+   ++ +   I LY
Sbjct: 702 VLLVFEAKIPTSFHRKWW----GLNLQFLLVFLCTFMQIVICIIWLY 744



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>CASR_HUMAN (P41180) Extracellular calcium-sensing receptor precursor (CaSR)|
           (Parathyroid Cell calcium-sensing receptor)
          Length = 1078

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 221 LLMVFDTYVPEDFHSETWPLVNGLPLQKCLIFVYCIVRQLYLNIKLY 81
           +L+VF+  +P  FH + W    GL LQ  L+F+   ++ +   I LY
Sbjct: 702 VLLVFEAKIPTSFHRKWW----GLNLQFLLVFLCTFMQIVICVIWLY 744


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,969,588
Number of Sequences: 219361
Number of extensions: 2041573
Number of successful extensions: 5178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5175
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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