ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19d22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 117 bits (59), Expect = 4e-23 Identities = 68/71 (95%) Strand = Plus / Plus Query: 270 aaatgttagcggaccaggaactgccacaagagaaggcagcaatttgctctgccaacctgg 329 |||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct: 4620936 aaatgtcagcggaccaggaactgccacaagagaaggcggcaattagctctgccaacctgg 4620995 Query: 330 gcagccagccc 340 ||||||||||| Sbjct: 4620996 gcagccagccc 4621006 Score = 75.8 bits (38), Expect = 1e-10 Identities = 99/114 (86%), Gaps = 4/114 (3%) Strand = Plus / Plus Query: 429 agcatactatttt-acagctaga-gctttcttggatttctacaaactgctcgccaatgat 486 ||||||||||||| ||| ||||| ||||| ||||||||||||| | |||||||||| || Sbjct: 4621116 agcatactatttttacaactagaagctttgttggatttctacagaatgctcgccaacga- 4621174 Query: 487 ttaatagggcaga-aacctggctaaaaacaagcaggttgtccagacgaagccac 539 |||| |||||||| |||||||| |||||||||||||| ||| || |||||||| Sbjct: 4621175 ttaacagggcagataacctggcctaaaacaagcaggttctccggatgaagccac 4621228 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 127 aaaattaggcatttctgcaacgggagaccat 157 ||||||||||||||||||||||||||||||| Sbjct: 4620780 aaaattaggcatttctgcaacgggagaccat 4620810
>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695A04 Length = 158133 Score = 117 bits (59), Expect = 4e-23 Identities = 68/71 (95%) Strand = Plus / Plus Query: 270 aaatgttagcggaccaggaactgccacaagagaaggcagcaatttgctctgccaacctgg 329 |||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct: 28152 aaatgtcagcggaccaggaactgccacaagagaaggcggcaattagctctgccaacctgg 28211 Query: 330 gcagccagccc 340 ||||||||||| Sbjct: 28212 gcagccagccc 28222 Score = 75.8 bits (38), Expect = 1e-10 Identities = 99/114 (86%), Gaps = 4/114 (3%) Strand = Plus / Plus Query: 429 agcatactatttt-acagctaga-gctttcttggatttctacaaactgctcgccaatgat 486 ||||||||||||| ||| ||||| ||||| ||||||||||||| | |||||||||| || Sbjct: 28332 agcatactatttttacaactagaagctttgttggatttctacagaatgctcgccaacga- 28390 Query: 487 ttaatagggcaga-aacctggctaaaaacaagcaggttgtccagacgaagccac 539 |||| |||||||| |||||||| |||||||||||||| ||| || |||||||| Sbjct: 28391 ttaacagggcagataacctggcctaaaacaagcaggttctccggatgaagccac 28444 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 127 aaaattaggcatttctgcaacgggagaccat 157 ||||||||||||||||||||||||||||||| Sbjct: 27996 aaaattaggcatttctgcaacgggagaccat 28026
>dbj|AK121977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108J21, full insert sequence Length = 2027 Score = 117 bits (59), Expect = 4e-23 Identities = 68/71 (95%) Strand = Plus / Minus Query: 270 aaatgttagcggaccaggaactgccacaagagaaggcagcaatttgctctgccaacctgg 329 |||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct: 2016 aaatgtcagcggaccaggaactgccacaagagaaggcggcaattagctctgccaacctgg 1957 Query: 330 gcagccagccc 340 ||||||||||| Sbjct: 1956 gcagccagccc 1946 Score = 75.8 bits (38), Expect = 1e-10 Identities = 99/114 (86%), Gaps = 4/114 (3%) Strand = Plus / Minus Query: 429 agcatactatttt-acagctaga-gctttcttggatttctacaaactgctcgccaatgat 486 ||||||||||||| ||| ||||| ||||| ||||||||||||| | |||||||||| || Sbjct: 1836 agcatactatttttacaactagaagctttgttggatttctacagaatgctcgccaacga- 1778 Query: 487 ttaatagggcaga-aacctggctaaaaacaagcaggttgtccagacgaagccac 539 |||| |||||||| |||||||| |||||||||||||| ||| || |||||||| Sbjct: 1777 ttaacagggcagataacctggcctaaaacaagcaggttctccggatgaagccac 1724
>gb|AY108009.1| Zea mays PCO106628 mRNA sequence Length = 990 Score = 58.0 bits (29), Expect = 3e-05 Identities = 85/101 (84%), Gaps = 2/101 (1%) Strand = Plus / Minus Query: 430 gcatactattttacagctagag-ctttcttggatttctacaaactgctcgccaatgattt 488 ||||||||||||||| ||||| |||| ||||||||||||||| ||| ||| | ||| Sbjct: 916 gcatactattttacaactagaaactttggtggatttctacaaaccgcttgcccacgata- 858 Query: 489 aatagggcagaaacctggctaaaaacaagcaggttgtccag 529 || || ||||| ||||||||||||| ||||| ||||||||| Sbjct: 857 aagagagcagagacctggctaaaaataagcatgttgtccag 817
>gb|AC025669.19| Mus musculus chromosome 14, clone RP23-5O16, complete sequence Length = 203826 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 558 tgctaatttagtttagaaaaat 579 |||||||||||||||||||||| Sbjct: 128160 tgctaatttagtttagaaaaat 128139
>gb|AC080094.5| Homo sapiens BAC clone RP11-1007E2 from 2, complete sequence Length = 134001 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 556 catgctaatttagtttagaaaa 577 |||||||||||||||||||||| Sbjct: 9671 catgctaatttagtttagaaaa 9692
>emb|BX942828.16| Zebrafish DNA sequence from clone CH211-237F16 in linkage group 17, complete sequence Length = 125793 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 515 aagcaggttgtccagacgaag 535 ||||||||||||||||||||| Sbjct: 62966 aagcaggttgtccagacgaag 62986
>emb|AL157781.8| Human DNA sequence from clone RP11-115N6 on chromosome 10, complete sequence Length = 119502 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 cagggagaaataaagagacac 70 ||||||||||||||||||||| Sbjct: 42434 cagggagaaataaagagacac 42454
>gb|AC013300.9| Homo sapiens, clone RP11-3O20, complete sequence Length = 119711 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 aacaccatcaacaacaatagc 228 ||||||||||||||||||||| Sbjct: 35788 aacaccatcaacaacaatagc 35768
>gb|AC011257.9| Homo sapiens chromosome , clone RP11-26E5, complete sequence Length = 184194 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 aacaccatcaacaacaatagc 228 ||||||||||||||||||||| Sbjct: 34781 aacaccatcaacaacaatagc 34801
>gb|AC148711.1| Macaca mulatta Major Histocompatibility Complex BAC MMU404O15, complete sequence Length = 157177 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 428 tagcatactattttacagcta 448 ||||||||||||||||||||| Sbjct: 15533 tagcatactattttacagcta 15553
>gb|AC115725.9| Mus musculus chromosome 5, clone RP23-21A18, complete sequence Length = 278172 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 ggaaatcttctggtacatatgtatc 206 |||||||||||| |||||||||||| Sbjct: 223690 ggaaatcttctgctacatatgtatc 223714
>gb|AC091400.4| Pan troglodytes clone RP43-13P21, complete sequence Length = 89312 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caagagaaggcagcaatttg 315 |||||||||||||||||||| Sbjct: 31503 caagagaaggcagcaatttg 31522
>gb|AC087112.2| Rattus norvegicus strain Brown Norway clone RP31-162L19, complete sequence Length = 149639 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 agctagagctttcttggatttcta 467 ||||||| |||||||||||||||| Sbjct: 86613 agctagatctttcttggatttcta 86636
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 aaggcagcaatttgctctgccaac 325 ||||||||||||||| |||||||| Sbjct: 3197469 aaggcagcaatttgcgctgccaac 3197446
>gb|AC005081.3| Homo sapiens BAC clone CTA-270D13 from 7, complete sequence Length = 180290 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 caagagaaggcagcaatttg 315 |||||||||||||||||||| Sbjct: 109864 caagagaaggcagcaatttg 109845
>gb|AC121216.4| Rattus norvegicus 4 CH230-220A21 (Children's Hospital Oakland Research Institute) complete sequence Length = 224326 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 agctagagctttcttggatttcta 467 ||||||| |||||||||||||||| Sbjct: 167010 agctagatctttcttggatttcta 167033
>gb|AC125415.9| Homo sapiens chromosome 17, clone CTD-2309P3, complete sequence Length = 95090 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 ccaacctgggcagccagccctccc 344 |||||||||| ||||||||||||| Sbjct: 45641 ccaacctggggagccagccctccc 45618
>emb|CR450724.10| Zebrafish DNA sequence from clone DKEY-168I4 in linkage group 18, complete sequence Length = 197565 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 caaaatacagtttaatgttcaaat 100 ||||||||||||||||||| |||| Sbjct: 73783 caaaatacagtttaatgttaaaat 73806
>gb|AC122031.2| Mus musculus BAC clone RP24-401P10 from 6, complete sequence Length = 157782 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 agggagaaataaagagacacttcc 74 ||||||||||||| |||||||||| Sbjct: 3078 agggagaaataaacagacacttcc 3101
>emb|AL356773.12| Human DNA sequence from clone RP11-44E24 on chromosome 1 Contains part of the RYR2 gene for ryanodine receptor 2 (cardiac), complete sequence Length = 108625 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ctcagttaccaccttatttc 257 |||||||||||||||||||| Sbjct: 41310 ctcagttaccaccttatttc 41329
>emb|AL356057.12| Human DNA sequence from clone RP11-474L11 on chromosome 6 contains the 5' end of the SUSP1 gene for SUMO-1-specific protease, the 5' end of a novel gene, a pseudogene similar to part of FLJ14463 and a CpG island, complete sequence Length = 184909 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 tcccaaacatgcccatctccactt 364 ||||| |||||||||||||||||| Sbjct: 42211 tcccacacatgcccatctccactt 42234
>gb|L05770.5|ACCPCAOP Acinetobacter sp. ADP1 dca-pca-qui-pob-hca supraoperonic gene cluster, complete sequence Length = 45324 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctggcgaacaatacagtaaa 124 |||||||||||||||||||| Sbjct: 28910 ctggcgaacaatacagtaaa 28929
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctggcgaacaatacagtaaa 124 |||||||||||||||||||| Sbjct: 1722760 ctggcgaacaatacagtaaa 1722779
>gb|AC022098.9| Homo sapiens chromosome 19 clone CTB-55O6, complete sequence Length = 237931 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 ccaacctgggcagccagccctccc 344 |||||||||| ||||||||||||| Sbjct: 232038 ccaacctggggagccagccctccc 232015
>gb|AC011509.8| Homo sapiens chromosome 19 clone CTD-2189E23, complete sequence Length = 111998 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 ccaacctgggcagccagccctccc 344 |||||||||| ||||||||||||| Sbjct: 25653 ccaacctggggagccagccctccc 25630
>gb|AC034242.6| Homo sapiens chromosome 5 clone CTD-2514M18, complete sequence Length = 221452 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 tacagtaaacaaaaattaggcatt 139 |||||||||||||||| ||||||| Sbjct: 125849 tacagtaaacaaaaatgaggcatt 125826
>gb|AC009392.6| Drosophila melanogaster, chromosome 2L, region 23A-23E, BAC clone BACR42J13, complete sequence Length = 179125 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 ggcagaaacctggctaaaaa 513 |||||||||||||||||||| Sbjct: 128654 ggcagaaacctggctaaaaa 128635
>gb|AC157278.2| Mus musculus BAC clone RP23-153L22 from chromosome 12, complete sequence Length = 199381 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 atgctaatttagtttagaaa 576 |||||||||||||||||||| Sbjct: 126355 atgctaatttagtttagaaa 126336
>dbj|AK033542.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030614I24 product:unclassifiable, full insert sequence Length = 1826 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 442 acagctagagctttcttggatttc 465 ||||||||||||||||||| |||| Sbjct: 142 acagctagagctttcttggctttc 119
>gb|AC073964.3|AC073964 Homo sapiens chromosome 15 clone RP11-394B5 map 15q21.2, complete sequence Length = 189796 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ctgggcagccagccctccca 345 |||||||||||||||||||| Sbjct: 62118 ctgggcagccagccctccca 62099
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 agctagagctttcttggatttcta 467 ||||||| |||||||||||||||| Sbjct: 1078399 agctagatctttcttggatttcta 1078422
>gb|AC155725.3| Mus musculus 6 BAC RP24-231N5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 167534 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 agggagaaataaagagacacttcc 74 ||||||||||||| |||||||||| Sbjct: 150917 agggagaaataaacagacacttcc 150940
>gb|AC127024.4| Homo sapiens chromosome 17, clone CTD-2349P21, complete sequence Length = 119050 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 ccaacctgggcagccagccctccc 344 |||||||||| ||||||||||||| Sbjct: 4304 ccaacctggggagccagccctccc 4327
>gb|AC130403.3| Homo sapiens 12 BAC RP11-674N14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 195432 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 gtttaatgttcaaatataac 105 |||||||||||||||||||| Sbjct: 185207 gtttaatgttcaaatataac 185188
>dbj|BS000068.1| Pan troglodytes chromosome 22 clone:RP43-046F21, map 22, complete sequences Length = 163689 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 aaacaccatcaacaacaata 226 |||||||||||||||||||| Sbjct: 81168 aaacaccatcaacaacaata 81149
>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete sequence Length = 314957 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 ggcagaaacctggctaaaaa 513 |||||||||||||||||||| Sbjct: 23057 ggcagaaacctggctaaaaa 23038
>dbj|AP006289.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-466C23, complete sequence Length = 166042 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 aaataaagagacacttccac 76 |||||||||||||||||||| Sbjct: 157216 aaataaagagacacttccac 157197
>gb|AC005562.1|AC005562 Homo sapiens chromosome 17, clone hRPK.271_K_11, complete sequence Length = 199182 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 ccaacctgggcagccagccctccc 344 |||||||||| ||||||||||||| Sbjct: 196081 ccaacctggggagccagccctccc 196104
>gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, complete sequence Length = 203185 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 atacagtaaacaaaaattag 134 |||||||||||||||||||| Sbjct: 95722 atacagtaaacaaaaattag 95741
>emb|BX284111.7| Mouse DNA sequence from clone RP23-217B8 on chromosome X, complete sequence Length = 223318 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 aacctgggcagccagccctc 342 |||||||||||||||||||| Sbjct: 163808 aacctgggcagccagccctc 163827
>gb|U73647.1|U73647 Human Chromosome 11 Cosmid cSRL72g6, complete sequence Length = 38639 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 aaataaagagacacttccac 76 |||||||||||||||||||| Sbjct: 29215 aaataaagagacacttccac 29234
>dbj|AP003780.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-472L10, complete sequence Length = 122351 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 aaataaagagacacttccac 76 |||||||||||||||||||| Sbjct: 40011 aaataaagagacacttccac 39992
>emb|AL683827.6| Mouse DNA sequence from clone RP23-473F3 on chromosome X, complete sequence Length = 181878 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 atcttctggtacatatgtatcaaa 209 ||||||||||||||||||| |||| Sbjct: 45714 atcttctggtacatatgtagcaaa 45737 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,856,911 Number of Sequences: 3902068 Number of extensions: 6856911 Number of successful extensions: 121379 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 121168 Number of HSP's gapped (non-prelim): 206 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
