ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19d21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC ... 241 1e-63
2RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC ... 237 2e-62
3RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC ... 233 2e-61
4KLEG1_ECOLI (Q52282) Putative protein kleG 31 2.4
5SERB_YEAST (P42941) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)... 30 5.3
6MPG1_SCHPO (O74484) Probable mannose-1-phosphate guanyltransfera... 30 6.9
7PXK_MOUSE (Q8BX57) PX domain-containing protein kinase-like prot... 29 9.0
8PXK_HUMAN (Q7Z7A4) PX domain-containing protein kinase-like prot... 29 9.0
9YR104_MIMIV (Q5UPI0) Putative transposase R104 29 9.0

>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 664

 Score =  241 bits (615), Expect = 1e-63
 Identities = 114/130 (87%), Positives = 125/130 (96%)
 Frame = -3

Query: 592 RMPISSDLNNPRNFITKISRYDKVVNIPNSMTMLDELLPISVEMAKRNLRGIWNFTNPGV 413
           RMPISSDLNNPRNFITKISRY+KVVNIPNSMT+LDELLPIS+EMAKRNLRGIWNFTNPGV
Sbjct: 534 RMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGV 593

Query: 412 VSHNEILEMYKKYMDPSYKWTNFTLEEQAKVIVAPRSNNEMDAAKLKREFPELLSIKDSL 233
           VSHNEILEMYK Y++P +KW+NF LEEQAKVIVAPRSNNEMD AKL +EFPE+LSIKDSL
Sbjct: 594 VSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSL 653

Query: 232 IKYVFEPNRK 203
           IKYVFEPN++
Sbjct: 654 IKYVFEPNKR 663



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>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 669

 Score =  237 bits (604), Expect = 2e-62
 Identities = 112/130 (86%), Positives = 125/130 (96%)
 Frame = -3

Query: 592 RMPISSDLNNPRNFITKISRYDKVVNIPNSMTMLDELLPISVEMAKRNLRGIWNFTNPGV 413
           RMPISSDLNNPRNFITKISRY+KVVNIPNSMT+LDELLPIS+EMAKRNL+GIWNFTNPGV
Sbjct: 539 RMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGV 598

Query: 412 VSHNEILEMYKKYMDPSYKWTNFTLEEQAKVIVAPRSNNEMDAAKLKREFPELLSIKDSL 233
           VSHNEILEMY+ Y++P +KW NFTLEEQAKVIVAPRSNNEMDA+KLK+EFPELLSIK+SL
Sbjct: 599 VSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESL 658

Query: 232 IKYVFEPNRK 203
           IKY + PN+K
Sbjct: 659 IKYAYGPNKK 668



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>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC|
           1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose
           synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose
           synthase MUM4)
          Length = 667

 Score =  233 bits (595), Expect = 2e-61
 Identities = 109/130 (83%), Positives = 125/130 (96%)
 Frame = -3

Query: 592 RMPISSDLNNPRNFITKISRYDKVVNIPNSMTMLDELLPISVEMAKRNLRGIWNFTNPGV 413
           RMPISSDLNNPRNFITKISRY+KVV+IPNSMT+LDELLPIS+EMAKRNLRGIWNFTNPGV
Sbjct: 537 RMPISSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGV 596

Query: 412 VSHNEILEMYKKYMDPSYKWTNFTLEEQAKVIVAPRSNNEMDAAKLKREFPELLSIKDSL 233
           VSHNEILEMYK Y++P +KW+NFT+EEQAKVIVA RSNNEMD +KL +EFPE+LSIK+SL
Sbjct: 597 VSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESL 656

Query: 232 IKYVFEPNRK 203
           +KYVFEPN++
Sbjct: 657 LKYVFEPNKR 666



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>KLEG1_ECOLI (Q52282) Putative protein kleG|
          Length = 87

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = -1

Query: 522 W*TSQTA*LCWMSFCRFQLRWQKGT-CGASGTSPILVWSATMRFWRCTRSTWIPATSGQT 346
           W +S+T   C    C  + RW+ G  C  + T P           R  R+ WIP T  + 
Sbjct: 20  WPSSRTGWACLPRRCASRRRWRAGRPCSTTRTGP-----------RFARARWIPTTGDRR 68

Query: 345 SRWKNRPR 322
            R   R R
Sbjct: 69  GRRPQRHR 76



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>SERB_YEAST (P42941) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)|
           (O-phosphoserine phosphohydrolase) (PSPase)
          Length = 309

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 23/93 (24%), Positives = 43/93 (46%)
 Frame = -3

Query: 529 DKVVNIPNSMTMLDELLPISVEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYMDPSYKWT 350
           +K+ N+ +S   +D +  +SV+   R  + ++ F     + + E++E+   Y        
Sbjct: 65  NKLTNVIDSHNDVDVI--VSVDNEYRQAKKLFVFDMDSTLIYQEVIELIAAYAG------ 116

Query: 349 NFTLEEQAKVIVAPRSNNEMDAAKLKREFPELL 251
              +EEQ   I     NNE+D  +  RE  +LL
Sbjct: 117 ---VEEQVHEITERAMNNELDFKESLRERVKLL 146



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>MPG1_SCHPO (O74484) Probable mannose-1-phosphate guanyltransferase (EC|
           2.7.7.13) (GTP-mannose-1-phosphate guanylyltransferase)
           (GDP-mannose pyrophosphorylase)
          Length = 363

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 550 ITKI---SRYDKVVNIPNSMTMLDELLPISVEMAKRNLRGIWNFTNPGVVSHNE 398
           +TK+   S+Y  VV+ PNS ++++  +   VE     + G     NP V+   E
Sbjct: 135 VTKVEEPSKYGVVVHYPNSESLIERFVEKPVEFVSNRINGGIYILNPSVLDRIE 188



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>PXK_MOUSE (Q8BX57) PX domain-containing protein kinase-like protein|
           (Modulator of Na,K-ATPase) (MONaKA)
          Length = 582

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
 Frame = -3

Query: 541 ISRYDKVVNIPNSMTMLDELLPISVEMAKRNL---------RGIWNFTNPGVVSHNEIL- 392
           + RY     + NS+ +    LP+  +    N+         RG+ N+ N  V+  N +L 
Sbjct: 53  VRRYSDFDLLNNSLQITGLSLPLPPKKLIGNMDREFIAERQRGLQNYLN--VIMANHVLS 110

Query: 391 --EMYKKYMDPSYKWTNFTLEEQAKVIVAPRSNNEMDAAKLKREFPELLSIKDSLIKYVF 218
             E+ KK++DP+    N+T     +V +  RS  + +  +  ++    +  K  L+K   
Sbjct: 111 NCELLKKFLDPNNYSANYTEIALQQVSMFFRSEPKWEVVEPLKDIGWRIRKKYFLMKIKN 170

Query: 217 EPNRKV 200
           +P  ++
Sbjct: 171 QPKERL 176



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>PXK_HUMAN (Q7Z7A4) PX domain-containing protein kinase-like protein|
           (Modulator of Na,K-ATPase) (MONaKA)
          Length = 578

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
 Frame = -3

Query: 541 ISRYDKVVNIPNSMTMLDELLPISVEMAKRNL---------RGIWNFTNPGVVSHNEIL- 392
           + RY     + NS+ +    LP+  +    N+         +G+ N+ N  V++ N IL 
Sbjct: 53  VRRYSDFDLLNNSLQIAGLSLPLPPKKLIGNMDREFIAERQKGLQNYLN--VITTNHILS 110

Query: 391 --EMYKKYMDPSYKWTNFTLEEQAKVIVAPRSNNEMDAAKLKREFPELLSIKDSLIKYVF 218
             E+ KK++DP+    N+T     +V +  RS  + +  +  ++    +  K  L+K   
Sbjct: 111 NCELVKKFLDPNNYSANYTEIALQQVSMFFRSEPKWEVVEPLKDIGWRIRKKYFLMKIKN 170

Query: 217 EPNRKV 200
           +P  ++
Sbjct: 171 QPKERL 176



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>YR104_MIMIV (Q5UPI0) Putative transposase R104|
          Length = 545

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 379 KYMDPSYKWTNFTLEEQAKVIVAPRSNNEMDAAKLKREFPELLSIKDSLIKYVFEPN--R 206
           KY+  +Y   N  + +Q K    P+SNN     KL     +LL I+DS  K   E N  R
Sbjct: 43  KYITFNYYSNNVPINDQLKFKDIPQSNNTDKKNKL---MDKLLKIEDSRYKKDIESNKTR 99

Query: 205 KVPAT 191
           K+  T
Sbjct: 100 KIKLT 104


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,840,368
Number of Sequences: 219361
Number of extensions: 1977682
Number of successful extensions: 5612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5608
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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