| Clone Name | rbags19d17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_493844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1006 Score = 283 bits (143), Expect = 3e-73 Identities = 224/251 (89%) Strand = Plus / Minus Query: 221 gttcatgcttggtcatatcttcactcaatcccaagccgcttctttgtgtgttgaagcaga 280 |||||| |||||||| ||||||| |||||||||| |||||||||||||||| ||||| | Sbjct: 755 gttcatccttggtcacatcttcaggcaatcccaagacgcttctttgtgtgttcaagcaaa 696 Query: 281 aattgtgggtccagcttcgtttgtgtgtatgcatcgatcttgttcacttcctcgatgaat 340 || ||||||||| | || |||| ||| || |||| |||||||||||||||||||||||| Sbjct: 695 aactgtgggtcctgtttggtttctgtataggcatgaatcttgttcacttcctcgatgaat 636 Query: 341 ttctgaatgttaggtctgtccttggtgatatcatagttttttataccagaaaagaatatc 400 ||||||| ||| |||| | ||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 635 ttctgaaggttgggtcggcccttggtgatatcgtagttctttataccagaaaagaatatc 576 Query: 401 tgaaacctttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaag 460 ||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||| Sbjct: 575 tgaaacctttcaataaatggaacatacgcaatgtccaccaagctgaactggccaaggaag 516 Query: 461 aaagggccatc 471 || |||||||| Sbjct: 515 aatgggccatc 505
>dbj|AK065887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044J05, full insert sequence Length = 1252 Score = 283 bits (143), Expect = 3e-73 Identities = 224/251 (89%) Strand = Plus / Minus Query: 221 gttcatgcttggtcatatcttcactcaatcccaagccgcttctttgtgtgttgaagcaga 280 |||||| |||||||| ||||||| |||||||||| |||||||||||||||| ||||| | Sbjct: 928 gttcatccttggtcacatcttcaggcaatcccaagacgcttctttgtgtgttcaagcaaa 869 Query: 281 aattgtgggtccagcttcgtttgtgtgtatgcatcgatcttgttcacttcctcgatgaat 340 || ||||||||| | || |||| ||| || |||| |||||||||||||||||||||||| Sbjct: 868 aactgtgggtcctgtttggtttctgtataggcatgaatcttgttcacttcctcgatgaat 809 Query: 341 ttctgaatgttaggtctgtccttggtgatatcatagttttttataccagaaaagaatatc 400 ||||||| ||| |||| | ||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 808 ttctgaaggttgggtcggcccttggtgatatcgtagttctttataccagaaaagaatatc 749 Query: 401 tgaaacctttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaag 460 ||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||| Sbjct: 748 tgaaacctttcaataaatggaacatacgcaatgtccaccaagctgaactggccaaggaag 689 Query: 461 aaagggccatc 471 || |||||||| Sbjct: 688 aatgggccatc 678
>dbj|AK061849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F06, full insert sequence Length = 1029 Score = 283 bits (143), Expect = 3e-73 Identities = 224/251 (89%) Strand = Plus / Minus Query: 221 gttcatgcttggtcatatcttcactcaatcccaagccgcttctttgtgtgttgaagcaga 280 |||||| |||||||| ||||||| |||||||||| |||||||||||||||| ||||| | Sbjct: 804 gttcatccttggtcacatcttcaggcaatcccaagacgcttctttgtgtgttcaagcaaa 745 Query: 281 aattgtgggtccagcttcgtttgtgtgtatgcatcgatcttgttcacttcctcgatgaat 340 || ||||||||| | || |||| ||| || |||| |||||||||||||||||||||||| Sbjct: 744 aactgtgggtcctgtttggtttctgtataggcatgaatcttgttcacttcctcgatgaat 685 Query: 341 ttctgaatgttaggtctgtccttggtgatatcatagttttttataccagaaaagaatatc 400 ||||||| ||| |||| | ||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 684 ttctgaaggttgggtcggcccttggtgatatcgtagttctttataccagaaaagaatatc 625 Query: 401 tgaaacctttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaag 460 ||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||| Sbjct: 624 tgaaacctttcaataaatggaacatacgcaatgtccaccaagctgaactggccaaggaag 565 Query: 461 aaagggccatc 471 || |||||||| Sbjct: 564 aatgggccatc 554
>gb|AY108092.1| Zea mays PCO124824 mRNA sequence Length = 658 Score = 176 bits (89), Expect = 4e-41 Identities = 185/217 (85%) Strand = Plus / Minus Query: 246 caatcccaagccgcttctttgtgtgttgaagcagaaattgtgggtccagcttcgtttgtg 305 |||||||||||||||||||||| || | ||| | ||| ||||||||| | || || |||| Sbjct: 353 caatcccaagccgcttctttgtctgctcaagtaaaaactgtgggtcctgtttagtctgtg 294 Query: 306 tgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctgtccttgg 365 |||||||||| ||||||| ||||||||| ||||| ||||||| ||| |||||| |||| | Sbjct: 293 tgtatgcatcaatcttgtccacttcctcaatgaacttctgaaggttgggtctgccctttg 234 Query: 366 tgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaatggcacat 425 | ||||||||||| ||||| ||| |||||||||||||||| ||||| ||||| |||| Sbjct: 233 taatatcatagttctttatgttggaatagaatatctgaaacctctcgatgaatggtacat 174 Query: 426 atgcaatgtccaccaaactgaactggccaaggaagaa 462 | ||||||||||||| ||||||||| |||||| |||| Sbjct: 173 acgcaatgtccaccagactgaactgaccaagggagaa 137
>gb|AY111952.1| Zea mays CL5438_1 mRNA sequence Length = 1008 Score = 167 bits (84), Expect = 4e-38 Identities = 187/223 (83%) Strand = Plus / Minus Query: 246 caatcccaagccgcttctttgtgtgttgaagcagaaattgtgggtccagcttcgtttgtg 305 |||||||||||||||||||||| || | |||| || |||||||| || || |||| Sbjct: 744 caatcccaagccgcttctttgtttgctcaagcnnnnnctgcgggtccagtttagtctgtg 685 Query: 306 tgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctgtccttgg 365 |||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||| | Sbjct: 684 tgtacgcatcgatcttgttcacttcctcgatgaatttctgaaggttgggtctgccctttg 625 Query: 366 tgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaatggcacat 425 |||| |||||||| ||||| ||| ||| |||||||| ||| ||||| || || |||| Sbjct: 624 tgatgtcatagttctttatggtggaatagagtatctgaagcctctcgatgaacggtacat 565 Query: 426 atgcaatgtccaccaaactgaactggccaaggaagaaagggcc 468 | |||| |||||||| ||||||||| ||||||||||| ||||| Sbjct: 564 acgcaacgtccaccagactgaactgaccaaggaagaacgggcc 522
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 147 bits (74), Expect = 4e-32 Identities = 101/110 (91%) Strand = Plus / Plus Query: 330 cctcgatgaatttctgaatgttaggtctgtccttggtgatatcatagttttttataccag 389 |||||||||||||||||| ||| |||| | ||||||||||||| ||||| |||||||||| Sbjct: 9684963 cctcgatgaatttctgaaggttgggtcggcccttggtgatatcgtagttctttataccag 9685022 Query: 390 aaaagaatatctgaaacctttcgataaatggcacatatgcaatgtccacc 439 |||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct: 9685023 aaaagaatatctgaaacctttcaataaatggaacatacgcaatgtccacc 9685072 Score = 69.9 bits (35), Expect = 7e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 250 cccaagccgcttctttgtgtgttgaagcagaaattgtgggtccagcttcgtttgtgtgta 309 |||||| |||||||||||||||| ||||| ||| ||||||||| | || |||| ||| || Sbjct: 9684684 cccaagacgcttctttgtgtgttcaagcaaaaactgtgggtcctgtttggtttctgtata 9684743 Query: 310 tgcatcgatcttgttcacttcct 332 |||| |||||||||||||||| Sbjct: 9684744 ggcatgaatcttgttcacttcct 9684766 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 437 accaaactgaactggccaaggaagaaagggccatc 471 ||||| |||||||||||||||||||| |||||||| Sbjct: 9685184 accaagctgaactggccaaggaagaatgggccatc 9685218 Score = 50.1 bits (25), Expect = 0.007 Identities = 112/141 (79%) Strand = Plus / Plus Query: 299 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctg 358 |||||||| ||||| ||||| |||| | ||||||||||||||||| | ||| || | | Sbjct: 9689673 gtttgtgtatatgcttcgattctgttgatttcctcgatgaatttctcgaggttgggccgg 9689732 Query: 359 tccttggtgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaat 418 | |||||||| || || || ||||| ||| || ||||||||| |||||| |||| | Sbjct: 9689733 ccattggtgatctcgtatttccttatatgagagtagtatatctgaatcctttcaataatt 9689792 Query: 419 ggcacatatgcaatgtccacc 439 | |||||| |||||||||||| Sbjct: 9689793 gtcacatacgcaatgtccacc 9689813 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 449 tggccaaggaagaaagggccatca 472 |||||||||||||| ||||||||| Sbjct: 9681178 tggccaaggaagaatgggccatca 9681201
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 147 bits (74), Expect = 4e-32 Identities = 101/110 (91%) Strand = Plus / Plus Query: 330 cctcgatgaatttctgaatgttaggtctgtccttggtgatatcatagttttttataccag 389 |||||||||||||||||| ||| |||| | ||||||||||||| ||||| |||||||||| Sbjct: 105862 cctcgatgaatttctgaaggttgggtcggcccttggtgatatcgtagttctttataccag 105921 Query: 390 aaaagaatatctgaaacctttcgataaatggcacatatgcaatgtccacc 439 |||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct: 105922 aaaagaatatctgaaacctttcaataaatggaacatacgcaatgtccacc 105971 Score = 69.9 bits (35), Expect = 7e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 250 cccaagccgcttctttgtgtgttgaagcagaaattgtgggtccagcttcgtttgtgtgta 309 |||||| |||||||||||||||| ||||| ||| ||||||||| | || |||| ||| || Sbjct: 105583 cccaagacgcttctttgtgtgttcaagcaaaaactgtgggtcctgtttggtttctgtata 105642 Query: 310 tgcatcgatcttgttcacttcct 332 |||| |||||||||||||||| Sbjct: 105643 ggcatgaatcttgttcacttcct 105665 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 437 accaaactgaactggccaaggaagaaagggccatc 471 ||||| |||||||||||||||||||| |||||||| Sbjct: 106083 accaagctgaactggccaaggaagaatgggccatc 106117 Score = 50.1 bits (25), Expect = 0.007 Identities = 112/141 (79%) Strand = Plus / Plus Query: 299 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctg 358 |||||||| ||||| ||||| |||| | ||||||||||||||||| | ||| || | | Sbjct: 110572 gtttgtgtatatgcttcgattctgttgatttcctcgatgaatttctcgaggttgggccgg 110631 Query: 359 tccttggtgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaat 418 | |||||||| || || || ||||| ||| || ||||||||| |||||| |||| | Sbjct: 110632 ccattggtgatctcgtatttccttatatgagagtagtatatctgaatcctttcaataatt 110691 Query: 419 ggcacatatgcaatgtccacc 439 | |||||| |||||||||||| Sbjct: 110692 gtcacatacgcaatgtccacc 110712 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 449 tggccaaggaagaaagggccatca 472 |||||||||||||| ||||||||| Sbjct: 102077 tggccaaggaagaatgggccatca 102100
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 147 bits (74), Expect = 4e-32 Identities = 101/110 (91%) Strand = Plus / Plus Query: 330 cctcgatgaatttctgaatgttaggtctgtccttggtgatatcatagttttttataccag 389 |||||||||||||||||| ||| |||| | ||||||||||||| ||||| |||||||||| Sbjct: 9683084 cctcgatgaatttctgaaggttgggtcggcccttggtgatatcgtagttctttataccag 9683143 Query: 390 aaaagaatatctgaaacctttcgataaatggcacatatgcaatgtccacc 439 |||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct: 9683144 aaaagaatatctgaaacctttcaataaatggaacatacgcaatgtccacc 9683193 Score = 69.9 bits (35), Expect = 7e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 250 cccaagccgcttctttgtgtgttgaagcagaaattgtgggtccagcttcgtttgtgtgta 309 |||||| |||||||||||||||| ||||| ||| ||||||||| | || |||| ||| || Sbjct: 9682805 cccaagacgcttctttgtgtgttcaagcaaaaactgtgggtcctgtttggtttctgtata 9682864 Query: 310 tgcatcgatcttgttcacttcct 332 |||| |||||||||||||||| Sbjct: 9682865 ggcatgaatcttgttcacttcct 9682887 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 437 accaaactgaactggccaaggaagaaagggccatc 471 ||||| |||||||||||||||||||| |||||||| Sbjct: 9683305 accaagctgaactggccaaggaagaatgggccatc 9683339 Score = 50.1 bits (25), Expect = 0.007 Identities = 112/141 (79%) Strand = Plus / Plus Query: 299 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctg 358 |||||||| ||||| ||||| |||| | ||||||||||||||||| | ||| || | | Sbjct: 9687794 gtttgtgtatatgcttcgattctgttgatttcctcgatgaatttctcgaggttgggccgg 9687853 Query: 359 tccttggtgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaat 418 | |||||||| || || || ||||| ||| || ||||||||| |||||| |||| | Sbjct: 9687854 ccattggtgatctcgtatttccttatatgagagtagtatatctgaatcctttcaataatt 9687913 Query: 419 ggcacatatgcaatgtccacc 439 | |||||| |||||||||||| Sbjct: 9687914 gtcacatacgcaatgtccacc 9687934 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 449 tggccaaggaagaaagggccatca 472 |||||||||||||| ||||||||| Sbjct: 9679299 tggccaaggaagaatgggccatca 9679322
>ref|XM_493845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 796 Score = 69.9 bits (35), Expect = 7e-09 Identities = 140/175 (80%) Strand = Plus / Minus Query: 299 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctg 358 |||||||| ||||| ||||| |||| | ||||||||||||||||| | ||| || | | Sbjct: 702 gtttgtgtatatgcttcgattctgttgatttcctcgatgaatttctcgaggttgggccgg 643 Query: 359 tccttggtgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaat 418 | |||||||| || || || ||||| ||| || ||||||||| |||||| |||| | Sbjct: 642 ccattggtgatctcgtatttccttatatgagagtagtatatctgaatcctttcaataatt 583 Query: 419 ggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggccatcac 473 | |||||| |||||||||||||| || || || ||||||||||| || ||||||| Sbjct: 582 gtcacatacgcaatgtccaccaagctaaattgtccaaggaagaatggaccatcac 528
>gb|AF237487.2|AF237487 Oryza sativa XIG mRNA, complete cds Length = 1058 Score = 69.9 bits (35), Expect = 7e-09 Identities = 140/175 (80%) Strand = Plus / Minus Query: 299 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctg 358 |||||||| ||||| ||||| |||| | ||||||||||||||||| | ||| || | | Sbjct: 703 gtttgtgtatatgcttcgattctgttgatttcctcgatgaatttctcgaggttgggccgg 644 Query: 359 tccttggtgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaat 418 | |||||||| || || || ||||| ||| || ||||||||| |||||| |||| | Sbjct: 643 ccattggtgatctcgtatttccttatatgagagtagtatatctgaatcctttcaataatt 584 Query: 419 ggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggccatcac 473 | |||||| |||||||||||||| || || || ||||||||||| || ||||||| Sbjct: 583 gtcacatacgcaatgtccaccaagctaaattgtccaaggaagaatggaccatcac 529
>ref|NM_120356.2| Arabidopsis thaliana unknown protein AT5G02780 mRNA, complete cds Length = 812 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 409 ttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggcc 468 |||||||||||| | ||||||||| || |||||||| | || ||||||||||||||| || Sbjct: 555 ttcgataaatgggatatatgcaatatcaaccaaactaagctcgccaaggaagaaaggacc 496 Query: 469 atcactaaacttt 481 |||| ||||||| Sbjct: 495 atcatcaaacttt 483
>gb|BT012424.1| Arabidopsis thaliana At5g02780 mRNA, complete cds Length = 714 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 409 ttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggcc 468 |||||||||||| | ||||||||| || |||||||| | || ||||||||||||||| || Sbjct: 555 ttcgataaatgggatatatgcaatatcaaccaaactaagctcgccaaggaagaaaggacc 496 Query: 469 atcactaaacttt 481 |||| ||||||| Sbjct: 495 atcatcaaacttt 483
>gb|BT010718.1| Arabidopsis thaliana At5g02780 mRNA, complete cds Length = 993 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 409 ttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggcc 468 |||||||||||| | ||||||||| || |||||||| | || ||||||||||||||| || Sbjct: 636 ttcgataaatgggatatatgcaatatcaaccaaactaagctcgccaaggaagaaaggacc 577 Query: 469 atcactaaacttt 481 |||| ||||||| Sbjct: 576 atcatcaaacttt 564
>ref|XM_493843.1| Oryza sativa (japonica cultivar-group), mRNA Length = 885 Score = 61.9 bits (31), Expect = 2e-06 Identities = 132/163 (80%), Gaps = 2/163 (1%) Strand = Plus / Minus Query: 311 gcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctgtccttg-gtgat 369 |||||||||||||||| ||||| ||||| |||| ||||||| || ||||| || || Sbjct: 644 gcatcgatcttgttcaattccttaatgaaaatctgtatgttagccct-tccttcagtaat 586 Query: 370 atcatagttttttataccagaaaagaatatctgaaacctttcgataaatggcacatatgc 429 ||||||||| ||||| |||| ||| | | ||||||| | || ||||| || |||| || Sbjct: 585 atcatagttctttatgccagcaaacagtgtctgaaatccatcaataaaaggtgcatacgc 526 Query: 430 aatgtccaccaaactgaactggccaaggaagaaagggccatca 472 |||||| |||| ||| || |||||||||||||| ||||||||| Sbjct: 525 aatgtcaaccagactaaattggccaaggaagaatgggccatca 483
>gb|AY332468.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase (GST) mRNA, complete cds Length = 1092 Score = 61.9 bits (31), Expect = 2e-06 Identities = 132/163 (80%), Gaps = 2/163 (1%) Strand = Plus / Minus Query: 311 gcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctgtccttg-gtgat 369 |||||||||||||||| ||||| ||||| |||| ||||||| || ||||| || || Sbjct: 682 gcatcgatcttgttcaattccttaatgaaaatctgtatgttagccct-tccttcagtaat 624 Query: 370 atcatagttttttataccagaaaagaatatctgaaacctttcgataaatggcacatatgc 429 ||||||||| ||||| |||| ||| | | ||||||| | || ||||| || |||| || Sbjct: 623 atcatagttctttatgccagcaaacagtgtctgaaatccatcaataaaaggtgcatacgc 564 Query: 430 aatgtccaccaaactgaactggccaaggaagaaagggccatca 472 |||||| |||| ||| || |||||||||||||| ||||||||| Sbjct: 563 aatgtcaaccagactaaattggccaaggaagaatgggccatca 521
>gb|DQ450070.1| Arachis hypogaea clone 7A4R17G putative IN2-1 protein mRNA, partial cds Length = 625 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 299 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaat 340 |||||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 356 gtttgtgtatatgcatcaatcttgttcacctcctcaatgaat 315
>gb|AF249913.1|AF249913 Glycine max In2-1 protein mRNA, complete cds Length = 1024 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 415 aaatggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggccatca 472 |||||| | ||| ||||| |||||||||||||| |||||||| ||||| || |||||| Sbjct: 573 aaatggaatataagcaatatccaccaaactgaattggccaagcaagaatggcccatca 516
>gb|DQ294619.1| Arachis hypogaea IN2-1 protein-like mRNA, partial sequence Length = 425 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 299 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaat 340 |||||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 388 gtttgtgtatatgcatcaatcttgttcacctcctcaatgaat 347
>emb|Y17386.1|TAE17386 Triticum aestivum mRNA for putative In2.1-like protein Length = 1031 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 428 gcaatgtccaccaaactgaactggccaaggaagaaagggcc 468 |||||||||||||| || || |||||||||||||| ||||| Sbjct: 580 gcaatgtccaccaagctaaattggccaaggaagaacgggcc 540
>emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chromosome 9, complete sequence Length = 196093 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 tagcatgcatctttttattcat 134 |||||||||||||||||||||| Sbjct: 120526 tagcatgcatctttttattcat 120547
>emb|AL355816.14| Human DNA sequence from clone RP5-1180E21 on chromosome 1 Contains a gene for a novel protein (DKFZp313E1815), a gene for choline/ethanolaminephosphotransferase (CEPT1), a gene (FLJ22457) for a novel protein, the 5' end of a novel transcript (DKFZp313J1722) and a CpG island, complete sequence Length = 141686 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 366 tgatatcatagttttttatacc 387 |||||||||||||||||||||| Sbjct: 37946 tgatatcatagttttttatacc 37925
>emb|CR626576.1| full-length cDNA clone CS0DI006YB10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1243 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 366 tgatatcatagttttttatacc 387 |||||||||||||||||||||| Sbjct: 1032 tgatatcatagttttttatacc 1053
>emb|CR613969.1| full-length cDNA clone CS0DI042YD14 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1726 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 366 tgatatcatagttttttatacc 387 |||||||||||||||||||||| Sbjct: 1187 tgatatcatagttttttatacc 1208
>emb|CR607093.1| full-length cDNA clone CS0DI013YN23 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1855 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 366 tgatatcatagttttttatacc 387 |||||||||||||||||||||| Sbjct: 1292 tgatatcatagttttttatacc 1313
>emb|AL833098.1|HSM804409 Homo sapiens mRNA; cDNA DKFZp313E1815 (from clone DKFZp313E1815) Length = 1937 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 366 tgatatcatagttttttatacc 387 |||||||||||||||||||||| Sbjct: 1677 tgatatcatagttttttatacc 1698
>emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F9G14 (ESSA project) Length = 104769 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Minus Query: 437 accaaactgaactggccaaggaagaaagggccatcactaaacttt 481 |||||||| | || ||||||||||||||| |||||| ||||||| Sbjct: 27437 accaaactaagctcgccaaggaagaaaggaccatcatcaaacttt 27393
>gb|AC010809.10| Homo sapiens, clone RP11-3D4, complete sequence Length = 173087 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 tctccatcttccatgctgcag 204 ||||||||||||||||||||| Sbjct: 54117 tctccatcttccatgctgcag 54137
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 caaactgaactggccaagga 458 |||||||||||||||||||| Sbjct: 1599982 caaactgaactggccaagga 1599963
>gb|AC140182.2| Mus musculus BAC clone RP24-349I16 from chromosome 8, complete sequence Length = 151221 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 tagttttttataccagaaaa 393 |||||||||||||||||||| Sbjct: 85488 tagttttttataccagaaaa 85507
>gb|BC038586.1| Homo sapiens zinc finger protein 490, mRNA (cDNA clone MGC:46699 IMAGE:5587423), complete cds Length = 6372 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tgtgttgaagcagaaattgt 286 |||||||||||||||||||| Sbjct: 33 tgtgttgaagcagaaattgt 52
>ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfamily A (CYP2A) on chromosome 19 Length = 413528 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agaaattgtgggtccagctt 297 |||||||||||||||||||| Sbjct: 214916 agaaattgtgggtccagctt 214897
>ref|NM_020714.1| Homo sapiens zinc finger protein 490 (ZNF490), mRNA Length = 6372 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tgtgttgaagcagaaattgt 286 |||||||||||||||||||| Sbjct: 33 tgtgttgaagcagaaattgt 52
>emb|CT009607.7| Mouse DNA sequence from clone RP23-134I10 on chromosome 17, complete sequence Length = 195995 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ttttttataccagaaaagaa 396 |||||||||||||||||||| Sbjct: 86840 ttttttataccagaaaagaa 86821
>gb|AC108830.13| Mus musculus chromosome 8, clone RP23-232G11, complete sequence Length = 200841 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 ggcctctgttcatgcttggtcata 237 ||||||||| |||||||||||||| Sbjct: 126645 ggcctctgtacatgcttggtcata 126622
>gb|AC123826.4| Mus musculus BAC clone RP24-97K3 from chromosome 8, complete sequence Length = 188704 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 tagttttttataccagaaaa 393 |||||||||||||||||||| Sbjct: 28692 tagttttttataccagaaaa 28711
>gb|AC123068.4| Mus musculus BAC clone RP23-21P10 from 1, complete sequence Length = 221464 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ccctggcctctgttcatgct 229 |||||||||||||||||||| Sbjct: 82526 ccctggcctctgttcatgct 82507
>gb|AC140913.25| Medicago truncatula clone mth2-26h9, complete sequence Length = 124828 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 aaacgtgcttaaaatactat 66 |||||||||||||||||||| Sbjct: 71551 aaacgtgcttaaaatactat 71532
>emb|AL513124.9| Human DNA sequence from clone RP11-401G5 on chromosome 9 Contains a uncharacterized hypothalamus protein HT007 pseudogene, complete sequence Length = 172766 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 109 ttagtagcatgcatctttttattcatag 136 ||||| |||||||||||| ||||||||| Sbjct: 53598 ttagttgcatgcatctttatattcatag 53571
>emb|AL117336.22|HSA324I22 Human DNA sequence from clone RP11-324I22 on chromosome 10 Contains the 3' end of the CREM gene for cAMP responsive element modulator, the 5' end of the gene for cyclin fold protein 1 (CFP1) (CBCP1), two novel genes, a novel gene containing part of FLJ32718 and two CpG islands, complete sequence Length = 190690 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 taatttattctcaaaaggca 103 |||||||||||||||||||| Sbjct: 159413 taatttattctcaaaaggca 159394
>gb|AE014276.1| Streptococcus agalactiae 2603V/R section 86 of 100 of the complete genome Length = 20741 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tttctgaatgttaggtctgt 359 |||||||||||||||||||| Sbjct: 7262 tttctgaatgttaggtctgt 7281
>gb|AC155276.3| Mus musculus BAC clone RP23-26E18 from chromosome 8, complete sequence Length = 234359 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ccgcaatcacaaaacgtgct 55 |||||||||||||||||||| Sbjct: 28055 ccgcaatcacaaaacgtgct 28074
>gb|AC010422.7| Homo sapiens chromosome 19 clone CTD-2192J16, complete sequence Length = 203790 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tgtgttgaagcagaaattgt 286 |||||||||||||||||||| Sbjct: 75332 tgtgttgaagcagaaattgt 75351
>gb|AC155816.3| Mus musculus BAC clone RP23-435J8 from chromosome 8, complete sequence Length = 207128 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ccgcaatcacaaaacgtgct 55 |||||||||||||||||||| Sbjct: 133333 ccgcaatcacaaaacgtgct 133352
>dbj|AB087837.1| Pisum sativum GST mRNA for glutathione S-transferase, partial cds Length = 990 Score = 40.1 bits (20), Expect = 6.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 428 gcaatgtccaccaaactgaactggccaaggaagaaagggccatc 471 ||||| |||||||||||||| || ||||| | ||| |||||||| Sbjct: 550 gcaatatccaccaaactgaattgaccaagaaggaaggggccatc 507
>gb|AC023172.1|AC023172 Homo sapiens chromosome 19, cosmid F22376, complete sequence Length = 42547 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agaaattgtgggtccagctt 297 |||||||||||||||||||| Sbjct: 25647 agaaattgtgggtccagctt 25628
>gb|AC103618.6| Mus musculus chromosome 1, clone RP24-202B6, complete sequence Length = 141016 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 tatatactacagtagcaagcaaga 165 ||||||||||||||||||| |||| Sbjct: 94102 tatatactacagtagcaaggaaga 94079
>gb|AC132365.4| Mus musculus BAC clone RP23-459M5 from 6, complete sequence Length = 162524 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 ggccaaggaagaaagggcca 469 |||||||||||||||||||| Sbjct: 135299 ggccaaggaagaaagggcca 135280
>gb|DQ298753.1| Homo sapiens cytochrome P450, family 2, subfamily B, polypeptide 6 (CYP2B6) gene, complete cds Length = 29315 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agaaattgtgggtccagctt 297 |||||||||||||||||||| Sbjct: 22053 agaaattgtgggtccagctt 22034
>gb|AC163341.5| Mus musculus BAC clone RP24-138G13 from chromosome 6, complete sequence Length = 179417 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 ggccaaggaagaaagggcca 469 |||||||||||||||||||| Sbjct: 35017 ggccaaggaagaaagggcca 34998
>gb|AC151905.4| Mus musculus BAC clone RP23-205J22 from chromosome 8, complete sequence Length = 214760 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 ggcctctgttcatgcttggtcata 237 ||||||||| |||||||||||||| Sbjct: 150576 ggcctctgtacatgcttggtcata 150599
>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete sequence Length = 188892 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 gttccctggcctctgttcat 226 |||||||||||||||||||| Sbjct: 158930 gttccctggcctctgttcat 158911
>dbj|AB033024.1| Homo sapiens mRNA for KIAA1198 protein, partial cds Length = 6090 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tgtgttgaagcagaaattgt 286 |||||||||||||||||||| Sbjct: 44 tgtgttgaagcagaaattgt 63
>emb|AL671905.4| Mouse DNA sequence from clone RP23-239H22 on chromosome X, complete sequence Length = 140012 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 169 ctcctgattgtctagtctccatcttcca 196 ||||||||| ||| |||||||||||||| Sbjct: 9671 ctcctgattctcttgtctccatcttcca 9644 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,145,102 Number of Sequences: 3902068 Number of extensions: 5145102 Number of successful extensions: 97909 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97742 Number of HSP's gapped (non-prelim): 165 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)