Clone Information

BLAST Search Result

Clone Name	rbags18o16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SMC2_MOUSE (Q8CG48) Structural maintenance of chromosome 2-like ...	206	4e-53
2	SMC2_HUMAN (O95347) Structural maintenance of chromosome 2-like ...	206	7e-53
3	SMC2_XENLA (P50533) Structural maintenance of chromosome 2 (Chro...	204	3e-52
4	SMC2_CHICK (Q90988) Structural maintenance of chromosome 2 (Chro...	196	5e-50
5	SMC2_SCHPO (P41003) Structural maintenance of chromosome 2 (Chro...	175	1e-43
6	SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-b...	174	2e-43
7	MIX1_CAEEL (Q09591) Mitotic chromosome and X-chromosome-associat...	170	4e-42
8	SMC_METJA (Q59037) Chromosome partition protein smc homolog	71	3e-12
9	SMC4_CAEEL (Q20060) Structural maintenance of chromosome 4 (Prot...	66	1e-10
10	SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chro...	63	7e-10
11	SMC1_YEAST (P32908) Structural maintenance of chromosome 1 (DA-b...	62	2e-09
12	SMC3_PONPY (Q5R4K5) Structural maintenance of chromosome 3 (Chon...	62	2e-09
13	SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chon...	62	2e-09
14	SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chon...	62	2e-09
15	SMC3_XENLA (O93309) Structural maintenance of chromosome 3 (Frag...	61	4e-09
16	SMC_BACSU (P51834) Chromosome partition protein smc	61	4e-09
17	SMC4_YEAST (Q12267) Structural maintenance of chromosome 4	61	4e-09
18	SMC3_SCHPO (O42649) Structural maintenance of chromosome 3 (Cohe...	60	5e-09
19	SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chon...	60	6e-09
20	SMC3_YEAST (P47037) Structural maintenance of chromosome 3 (DA-b...	59	1e-08
21	DPY27_CAEEL (P48996) Chromosome condensation protein dpy-27 (Pro...	58	2e-08
22	SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohe...	57	5e-08
23	SMC3_RAT (P97690) Structural maintenance of chromosome 3 (Chondr...	57	7e-08
24	SMC4_XENLA (P50532) Structural maintenance of chromosome 4 (Chro...	56	9e-08
25	SMC4_MICAR (Q9ERA5) Structural maintenance of chromosomes 4-like...	55	2e-07
26	SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like...	55	2e-07
27	SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like...	55	2e-07
28	SM1L2_MOUSE (Q920F6) Structural maintenance of chromosomes 1-lik...	55	2e-07
29	SM1L2_HUMAN (Q8NDV3) Structural maintenance of chromosome 1-like...	54	4e-07
30	SMC_MYCTU (Q10970) Chromosome partition protein smc	53	7e-07
31	SUDA_EMENI (Q00737) Chromosome segregation protein sudA (DA-box ...	53	1e-06
32	SMC1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1...	52	1e-06
33	SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like...	52	1e-06
34	SMC1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like...	52	1e-06
35	SMC1A_BOVIN (O97593) Structural maintenance of chromosome 1-like...	52	1e-06
36	SMC1A_XENLA (O93308) Structural maintenance of chromosome 1 prot...	52	2e-06
37	SMC_MYCLE (Q9CBT5) Chromosome partition protein smc	51	3e-06
38	P115_MYCHR (P41508) Protein P115	48	3e-05
39	YAT3_RHORU (P15016) Hypothetical protein in ATPase CF(0) subunit...	43	8e-04
40	P115_MYCGE (P47540) Protein P115 homolog	40	0.005
41	P115_MYCPN (P75361) Protein P115 homolog	40	0.009
42	YBBL_ECOLI (P77279) Hypothetical ABC transporter ATP-binding pro...	37	0.043
43	CCMA_XANCP (Q8P8M1) Cytochrome c biogenesis ATP-binding export p...	37	0.056
44	CCMA_XANAC (Q8PK53) Cytochrome c biogenesis ATP-binding export p...	37	0.056
45	MSBA_RALSO (Q8XXB6) Lipid A export ATP-binding/permease protein ...	34	0.47
46	COBQ_STRCO (Q9RJ20) Cobyric acid synthase	33	0.80
47	MSBA_CHRVO (Q7NZU6) Lipid A export ATP-binding/permease protein ...	33	1.0
48	CCMA_RHIME (Q92L55) Cytochrome c biogenesis ATP-binding export p...	32	1.8
49	MSBA_BORPE (Q7VWD8) Lipid A export ATP-binding/permease protein ...	32	1.8
50	MSBA_BORPA (Q7W9N7) Lipid A export ATP-binding/permease protein ...	32	1.8
51	MSBA_BORBR (Q7WH20) Lipid A export ATP-binding/permease protein ...	32	1.8
52	MSBA_METCA (Q60AA3) Lipid A export ATP-binding/permease protein ...	32	2.3
53	ABCX_GALSU (P35020) Probable ATP-dependent transporter ycf16	32	2.3
54	MSBA_DESPS (Q6AJW3) Lipid A export ATP-binding/permease protein ...	32	2.3
55	FECE_ECOLI (P15031) Iron(III) dicitrate transport ATP-binding pr...	31	3.1
56	NIST_LACLA (Q03203) Nisin transport ATP-binding protein nisT	31	3.1
57	MSBA_COXBU (Q83D84) Lipid A export ATP-binding/permease protein ...	31	3.1
58	Y131_METJA (Q57595) Hypothetical protein MJ0131	31	3.1
59	MSBA_XYLFT (Q87EF0) Lipid A export ATP-binding/permease protein ...	31	4.0
60	MSBA_XYLFA (Q9PEE7) Lipid A export ATP-binding/permease protein ...	31	4.0
61	Y065_MYCGE (P47311) Hypothetical ABC transporter ATP-binding pro...	30	5.2
62	KPST5_ECOLI (P24586) Polysialic acid transport ATP-binding prote...	30	5.2
63	RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC ...	30	5.2
64	MCJD_ECOLI (Q9X2W0) Microcin J25 export ATP-binding/permease pro...	30	5.2
65	MSBA_HAEIN (P44407) Lipid A export ATP-binding/permease protein ...	30	6.8
66	RECN_STRCO (Q9S220) DNA repair protein recN (Recombination prote...	30	6.8
67	YKC7_YEAST (P36101) Protein YKL027W	30	8.9
68	XYNB_THESJ (O30360) Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xy...	30	8.9
69	CCMA_RHIET (Q52733) Cytochrome c biogenesis ATP-binding export p...	30	8.9
70	RAD50_PYRKO (Q5JHN1) DNA double-strand break repair rad50 ATPase	30	8.9
71	CCMA_YERPS (Q668T8) Cytochrome c biogenesis ATP-binding export p...	30	8.9
72	CCMA_YERPE (Q8ZD58) Cytochrome c biogenesis ATP-binding export p...	30	8.9

>SMC2_MOUSE (Q8CG48) Structural maintenance of chromosome 2-like 1 protein|
            (Chromosome-associated protein E) (XCAP-E homolog)
            (FGF-inducible protein 16)
          Length = 1191

 Score =  206 bits (525), Expect = 4e-53
 Identities = 102/150 (68%), Positives = 115/150 (76%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQSLSEL 501
            K + L + W KVNKDFGSIF TLLPG  A L PPEG T LDGLE +VA G  WK++L+EL
Sbjct: 1026 KNQALNIAWQKVNKDFGSIFSTLLPGANAMLAPPEGQTVLDGLEFKVALGNTWKENLTEL 1085

Query: 500  SGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSL 321
            SGGQR            LFKPAP+YILDEVDAALDLSHTQNIG+M++ HF  SQFIVVSL
Sbjct: 1086 SGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDLSHTQNIGQMLRTHFTHSQFIVVSL 1145

Query: 320  KEGMFNNANVIFRTKFVDGVSTVTRTVPSK 231
            KEGMFNNANV+F+TKFVDGVSTV R   S+
Sbjct: 1146 KEGMFNNANVLFKTKFVDGVSTVARFTQSQ 1175

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>SMC2_HUMAN (O95347) Structural maintenance of chromosome 2-like 1 protein|
            (Chromosome-associated protein E) (hCAP-E) (XCAP-E
            homolog)
          Length = 1197

 Score =  206 bits (523), Expect = 7e-53
 Identities = 101/145 (69%), Positives = 113/145 (77%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQSLSEL 501
            K + L + W KVNKDFGSIF TLLPG  A L PPEG T LDGLE +VA G  WK++L+EL
Sbjct: 1026 KNQALNIAWQKVNKDFGSIFSTLLPGANAMLAPPEGQTVLDGLEFKVALGNTWKENLTEL 1085

Query: 500  SGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSL 321
            SGGQR            LFKPAP+YILDEVDAALDLSHTQNIG+M++ HF  SQFIVVSL
Sbjct: 1086 SGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDLSHTQNIGQMLRTHFTHSQFIVVSL 1145

Query: 320  KEGMFNNANVIFRTKFVDGVSTVTR 246
            KEGMFNNANV+F+TKFVDGVSTV R
Sbjct: 1146 KEGMFNNANVLFKTKFVDGVSTVAR 1170

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>SMC2_XENLA (P50533) Structural maintenance of chromosome 2|
            (Chromosome-associated protein E) (Chromosome assembly
            protein XCAP-E)
          Length = 1203

 Score =  204 bits (518), Expect = 3e-52
 Identities = 100/145 (68%), Positives = 113/145 (77%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQSLSEL 501
            K E L + W KVNKDFGSIF TLLPG  A L PPEG + LDGLE +VA G  WK++L+EL
Sbjct: 1027 KNEALNIAWQKVNKDFGSIFSTLLPGANAMLAPPEGQSVLDGLEFKVALGNTWKENLTEL 1086

Query: 500  SGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSL 321
            SGGQR            LFKPAP+YILDEVDAALDLSHTQNIG+M++ HF  SQFIVVSL
Sbjct: 1087 SGGQRSLVALSLILAMLLFKPAPIYILDEVDAALDLSHTQNIGQMLRTHFRHSQFIVVSL 1146

Query: 320  KEGMFNNANVIFRTKFVDGVSTVTR 246
            K+GMFNNANV+F+TKFVDGVSTV R
Sbjct: 1147 KDGMFNNANVLFKTKFVDGVSTVAR 1171

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>SMC2_CHICK (Q90988) Structural maintenance of chromosome 2 (Chromosome scaffold|
            protein ScII)
          Length = 1189

 Score =  196 bits (498), Expect = 5e-50
 Identities = 97/152 (63%), Positives = 114/152 (75%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQSLSEL 501
            K + L + W KVNKDFGSIF  LLPG  A L P +    LDGLE RV  G +WK++L+EL
Sbjct: 1026 KNKALHIAWEKVNKDFGSIFSMLLPGAKAMLVPSKKQNILDGLEFRVGLGDIWKENLTEL 1085

Query: 500  SGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSL 321
            SGGQR            LFKPAP+YILDEVDAALDLSHTQNIG+M+ AHF QSQF+VVSL
Sbjct: 1086 SGGQRSLAALSLILAILLFKPAPIYILDEVDAALDLSHTQNIGQMLHAHFKQSQFLVVSL 1145

Query: 320  KEGMFNNANVIFRTKFVDGVSTVTRTVPSKQK 225
            K+GMFNNANV++RTKFVDG+STV+R    K+K
Sbjct: 1146 KDGMFNNANVLYRTKFVDGISTVSRHCQLKKK 1177

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>SMC2_SCHPO (P41003) Structural maintenance of chromosome 2 (Chromosome|
            segregation protein cut14) (Cell untimely torn protein
            14)
          Length = 1172

 Score =  175 bits (443), Expect = 1e-43
 Identities = 84/143 (58%), Positives = 100/143 (69%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQSLSEL 501
            K+  L+ TW +VN  FG IF  LLPG  A+L PPE   F DGLE+ V  G++WK SL+EL
Sbjct: 1027 KRSALEKTWREVNSSFGEIFDELLPGNSAELQPPENKEFTDGLEIHVKIGSIWKDSLAEL 1086

Query: 500  SGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSL 321
            SGGQR             +KPAP+YILDE+DAALDLSHTQNIGR+IK  F  SQFI+VSL
Sbjct: 1087 SGGQRSLVALALIMSLLKYKPAPMYILDEIDAALDLSHTQNIGRLIKTKFKGSQFIIVSL 1146

Query: 320  KEGMFNNANVIFRTKFVDGVSTV 252
            KEGMF NAN +F  +F+DG S V
Sbjct: 1147 KEGMFTNANRLFHVRFMDGSSVV 1169

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>SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-box protein SMC2)|
          Length = 1170

 Score =  174 bits (441), Expect = 2e-43
 Identities = 89/144 (61%), Positives = 101/144 (70%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQSLSEL 501
            K+ETL  TW KV  DFG+IF  LLP + AKL P EG     GLEV+V  G +WK+SL EL
Sbjct: 1025 KRETLVKTWEKVTLDFGNIFADLLPNSFAKLVPCEGKDVTQGLEVKVKLGNIWKESLIEL 1084

Query: 500  SGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSL 321
            SGGQR             F+PAP+YILDEVDAALDLSHTQNIG +IK  F  SQFIVVSL
Sbjct: 1085 SGGQRSLIALSLIMALLQFRPAPMYILDEVDAALDLSHTQNIGHLIKTRFKGSQFIVVSL 1144

Query: 320  KEGMFNNANVIFRTKFVDGVSTVT 249
            KEGMF NAN +FRT+F DG S V+
Sbjct: 1145 KEGMFANANRVFRTRFQDGTSVVS 1168

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>MIX1_CAEEL (Q09591) Mitotic chromosome and X-chromosome-associated protein mix-1|
            (Structural maintenance of chromosome 2) (Lethal protein
            29)
          Length = 1244

 Score =  170 bits (430), Expect = 4e-42
 Identities = 87/134 (64%), Positives = 98/134 (73%)
 Frame = -3

Query: 647  VNKDFGSIFGTLLPGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXX 468
            VNKDFG IF  LLP   A L PPEG T  +GLEV+V+FG V K SL ELSGGQR      
Sbjct: 1052 VNKDFGQIFNCLLPDAHASLVPPEGKTVCEGLEVKVSFGGVVKDSLHELSGGQRSLVALS 1111

Query: 467  XXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVI 288
                   FKPAPLYILDEVDAALDLSHT NIG MIK HF  +QFI+VSLK+GMF+NA+V+
Sbjct: 1112 LILAMLKFKPAPLYILDEVDAALDLSHTANIGMMIKTHFHHNQFIIVSLKQGMFSNADVL 1171

Query: 287  FRTKFVDGVSTVTR 246
            F+T+F DG ST TR
Sbjct: 1172 FQTRFADGHSTCTR 1185

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>SMC_METJA (Q59037) Chromosome partition protein smc homolog|
          Length = 1169

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKL------DPPEGGTFLDGLEVRVAFGTVWK 519
            KKE     + KV K+F  ++  +  G + KL      +P EGG  +D             
Sbjct: 1023 KKEVFMEVFNKVAKNFEEVYKEI--GGIGKLSLENEKNPFEGGILIDASPRGKKL----- 1075

Query: 518  QSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQ 339
             SL  +SGG++               P+P Y+LDEVDAALD+ +   I  MIK     SQ
Sbjct: 1076 LSLDAMSGGEKSLTALAFLFAIQRLNPSPFYVLDEVDAALDVKNVSLIADMIKNASKDSQ 1135

Query: 338  FIVVSLKEGMFNNANVIFRTKFVDGVSTV 252
            FIV+S +E M + A+V++     +G+S V
Sbjct: 1136 FIVISHREQMVSKADVVYGVYMENGLSKV 1164

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>SMC4_CAEEL (Q20060) Structural maintenance of chromosome 4 (Protein smc-4)|
          Length = 1549

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
 Frame = -3

Query: 647  VNKDFGSIFGTLLPGTMAKLDP-PEGGTFLDGLEVRVAFGT-VWKQSLSELSGGQRXXXX 474
            + K   ++F  L  G  AKL+   +   F  G+   V      WKQ +  LSGG++    
Sbjct: 1229 IGKHLVAVFKMLTDGGDAKLEYIDKDDPFRQGISFMVRPAKKAWKQ-IQFLSGGEKTLSS 1287

Query: 473  XXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNAN 294
                    +F+P P Y++DE+DAALD  +   I + ++     +QFI++SL+  MF  AN
Sbjct: 1288 LALIFALHMFRPTPFYVMDEIDAALDYRNVSIIAQYVRQKTENAQFIIISLRNNMFELAN 1347

Query: 293  VIFRTKFVDG 264
             +     VDG
Sbjct: 1348 RLVGIYKVDG 1357

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>SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chromosome|
            segregation protein cut3) (Cell untimely torn protein 3)
          Length = 1324

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 29/73 (39%), Positives = 42/73 (57%)
 Frame = -3

Query: 524  WKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQ 345
            WK ++S LSGG++             +KP PLY++DE+DAALD  +   +   IK     
Sbjct: 1224 WK-NISNLSGGEKTLSSLALVFALHNYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKN 1282

Query: 344  SQFIVVSLKEGMF 306
            +QFIV+SL+  MF
Sbjct: 1283 AQFIVISLRSNMF 1295

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>SMC1_YEAST (P32908) Structural maintenance of chromosome 1 (DA-box protein SMC1)|
          Length = 1225

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
 Frame = -3

Query: 518  QSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAH-FPQS 342
            + +  LSGG++             ++P+P ++LDEVDAALD+++ Q I   I+ H  P  
Sbjct: 1124 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDL 1183

Query: 341  QFIVVSLKEGMFNNANVI 288
            QFIV+SLK  MF  ++ +
Sbjct: 1184 QFIVISLKNTMFEKSDAL 1201

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>SMC3_PONPY (Q5R4K5) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6)
          Length = 1217

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 33/176 (18%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKL-------------DPPEGGTFLD------ 558
            K E +++T+ +V+K+F  +F  L+PG  A L             D  EG    +      
Sbjct: 1025 KYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQ 1084

Query: 557  ----------GLEVRVAFGTVWKQS----LSELSGGQRXXXXXXXXXXXXLFKPAPLYIL 420
                      G+ +RV+F    KQ     + +LSGGQ+               PAP Y+ 
Sbjct: 1085 SSVPSVDQFTGVGIRVSF--TGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLF 1142

Query: 419  DEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVIFRTKFVDGVSTV 252
            DE+D ALD  H + +  MI      +QFI  + +  +  +A+  +  KF + VS +
Sbjct: 1143 DEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHI 1198

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>SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6) (Chromosome segregation protein SmcD)
            (Bamacan) (Basement membrane-associated chondroitin
            proteoglycan) (Mad member-interacting protein 1)
          Length = 1217

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 33/176 (18%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKL-------------DPPEGGTFLD------ 558
            K E +++T+ +V+K+F  +F  L+PG  A L             D  EG    +      
Sbjct: 1025 KYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQ 1084

Query: 557  ----------GLEVRVAFGTVWKQS----LSELSGGQRXXXXXXXXXXXXLFKPAPLYIL 420
                      G+ +RV+F    KQ     + +LSGGQ+               PAP Y+ 
Sbjct: 1085 SSVPSVDQFTGVGIRVSF--TGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLF 1142

Query: 419  DEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVIFRTKFVDGVSTV 252
            DE+D ALD  H + +  MI      +QFI  + +  +  +A+  +  KF + VS +
Sbjct: 1143 DEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHI 1198

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>SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6) (Chromosome-associated polypeptide)
            (hCAP) (Bamacan) (Basement membrane-associated
            chondroitin proteoglycan)
          Length = 1217

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 33/176 (18%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKL-------------DPPEGGTFLD------ 558
            K E +++T+ +V+K+F  +F  L+PG  A L             D  EG    +      
Sbjct: 1025 KYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQ 1084

Query: 557  ----------GLEVRVAFGTVWKQS----LSELSGGQRXXXXXXXXXXXXLFKPAPLYIL 420
                      G+ +RV+F    KQ     + +LSGGQ+               PAP Y+ 
Sbjct: 1085 SSVPSVDQFTGVGIRVSF--TGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLF 1142

Query: 419  DEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVIFRTKFVDGVSTV 252
            DE+D ALD  H + +  MI      +QFI  + +  +  +A+  +  KF + VS +
Sbjct: 1143 DEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHI 1198

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>SMC3_XENLA (O93309) Structural maintenance of chromosome 3 (Fragment)|
          Length = 234

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 23/166 (13%)
 Frame = -3

Query: 680 KKETLKVTWLKVNKDFGSIFGTLLPG----TMAKLDPPEGGTFLD--------------- 558
           K E +++T+ +V+K+F  +F  L+PG     + K    EG    D               
Sbjct: 50  KYEAIQLTFKQVSKNFSEVFQKLVPGGRPLLVMKKGDVEGSQSQDEGEGSAQSSVPSFDQ 109

Query: 557 --GLEVRVAFG--TVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLS 390
             G+ +RV+F       + + +LS GQ+               PAP Y+ DE+D ALD  
Sbjct: 110 FTGVGIRVSFTGKQAEMREMQQLSRGQKSLVALRLIFAIQKCDPAPFYLFDEIDQALDAQ 169

Query: 389 HTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVIFRTKFVDGVSTV 252
           H + +  MI      +QFI  + +  +  +A+  +  KF + VS +
Sbjct: 170 HRKAVSDMIMELASHAQFITTTFRPELLESADKFYGVKFRNKVSHI 215

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>SMC_BACSU (P51834) Chromosome partition protein smc|
          Length = 1186

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
 Frame = -3

Query: 659  TWLKVNKDFGSIFGTLLPGTMAKLDPPEGGTFL-DGLEVRVAFGTVWKQSLSELSGGQRX 483
            T++++   F  +F +L  G  A+L   +    L  G+E+         Q+L+ LSGG+R 
Sbjct: 1036 TFVQIRSHFDQVFRSLFGGGRAELRLTDPNDLLHSGVEIIAQPPGKKLQNLNLLSGGERA 1095

Query: 482  XXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFN 303
                         +P P  +LDEV+AALD ++     + +K +   +QFIV++ ++G   
Sbjct: 1096 LTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVITHRKGTME 1155

Query: 302  NANVIFR-TKFVDGVSTV 252
             A+V++  T    GVS V
Sbjct: 1156 EADVLYGVTMQESGVSKV 1173

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>SMC4_YEAST (Q12267) Structural maintenance of chromosome 4|
          Length = 1418

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 27/74 (36%), Positives = 42/74 (56%)
 Frame = -3

Query: 518  QSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQ 339
            ++++ LSGG++             +KP PLY++DE+DAALD  +   +   IK     +Q
Sbjct: 1318 RNITNLSGGEKTLSSLALVFALHKYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQ 1377

Query: 338  FIVVSLKEGMFNNA 297
            FIV+SL+  MF  A
Sbjct: 1378 FIVISLRNNMFELA 1391

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>SMC3_SCHPO (O42649) Structural maintenance of chromosome 3 (Cohesin complex Psm3|
            subunit)
          Length = 1194

 Score = 60.5 bits (145), Expect = 5e-09
 Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 25/168 (14%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKL--------------------DPPEGGTFL 561
            K E ++ T+ +V K F  IF  L+P    +L                    D P   + +
Sbjct: 1013 KDEAIERTFKQVAKSFSEIFVKLVPAGRGELVMNRRSELSQSIEQDISMDIDTPSQKSSI 1072

Query: 560  D---GLEVRVAFGTVWKQSLS--ELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALD 396
            D   G+ +RV+F +   + L+  +LSGGQ+               PAP  ILDE DA LD
Sbjct: 1073 DNYTGISIRVSFNSKDDEQLNINQLSGGQKSLCALTLIFAIQRCDPAPFNILDECDANLD 1132

Query: 395  LSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVIFRTKFVDGVSTV 252
              +   I  M+K     SQFI  + +  M   A+  +   F   VSTV
Sbjct: 1133 AQYRSAIAAMVKEMSKTSQFICTTFRPEMVKVADNFYGVMFNHKVSTV 1180

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>SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6)
          Length = 1218

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 34/177 (19%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKL---------------------------DP 582
            K E +++T+ +V+K+F  +F  L+PG  A L                            P
Sbjct: 1025 KYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKRRXERQSGLRMKEKGVVKGERGSGP 1084

Query: 581  PEGGTFLD---GLEVRVAFGTVWKQS----LSELSGGQRXXXXXXXXXXXXLFKPAPLYI 423
                  +D   G+ +RV+F    KQ     + +LSGGQ+               PAP Y+
Sbjct: 1085 QSSVPSVDQFTGVGIRVSF--TGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYL 1142

Query: 422  LDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVIFRTKFVDGVSTV 252
             DE+D ALD  H + +  MI      +QFI  + +  +  +A+  +  KF + VS +
Sbjct: 1143 FDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHI 1199

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>SMC3_YEAST (P47037) Structural maintenance of chromosome 3 (DA-box protein SMC3)|
          Length = 1230

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 30/173 (17%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKL----------------------------D 585
            K   +  T+ KV+++F ++F  L+P   AKL                            +
Sbjct: 1037 KVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAESNESQN 1096

Query: 584  PPEGGTFLDGLEVRVAFGTVWKQSL--SELSGGQRXXXXXXXXXXXXLFKPAPLYILDEV 411
              +      G+ + V+F +   + L   +LSGGQ+            +  PA  Y+ DE+
Sbjct: 1097 GKDSEIMYTGVSISVSFNSKQNEQLHVEQLSGGQKTVCAIALILAIQMVDPASFYLFDEI 1156

Query: 410  DAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVIFRTKFVDGVSTV 252
            DAALD  +   +  ++K     +QFI  + +  M   A+  FR K+ + +STV
Sbjct: 1157 DAALDKQYRTAVATLLKELSKNAQFICTTFRTDMLQVADKFFRVKYENKISTV 1209

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>DPY27_CAEEL (P48996) Chromosome condensation protein dpy-27 (Protein dumpty-27)|
          Length = 1469

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
 Frame = -3

Query: 587  DPPEGGTFLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVD 408
            DP +GG       VR A  + WK  +  LSGG++             ++P PLY++DE+D
Sbjct: 1222 DPFDGGI---KFSVRPAKKS-WKL-IENLSGGEKTLASLCFVFAMHHYRPTPLYVMDEID 1276

Query: 407  AALDLSHTQNIGRMIK--AHFPQSQFIVVSLKEGMFNNANVIFRTKFVDG 264
            AALDL++   I   IK       +QFI++SL+  MF   N +     +DG
Sbjct: 1277 AALDLNNVSLIANYIKHSERTRNAQFIIISLRNQMFEVGNRLLGIYKIDG 1326

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>SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohesin complex|
            subunit psm1) (Chromosome segregation protein smc1)
          Length = 1233

 Score = 57.0 bits (136), Expect = 5e-08
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
 Frame = -3

Query: 602  TMAKLDPPEGGTFLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYI 423
            T+  LD P    +L G++          + + +LSGG++             ++P+P ++
Sbjct: 1103 TLDDLDEP----YLGGIKFHAMPPMKRFRDMDQLSGGEKTMAALALLFAIHSYQPSPFFV 1158

Query: 422  LDEVDAALDLSHTQNIGRMIKAHFPQS-QFIVVSLKEGMFNNANVI 288
            LDE+DAALD ++   I   I+ H     QF+V+SLK  +F+ +  +
Sbjct: 1159 LDEIDAALDQTNVTKIANYIRQHASSGFQFVVISLKNQLFSKSEAL 1204

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>SMC3_RAT (P97690) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6) (Chromosome segregation protein SmcD)
            (Bamacan) (Basement membrane-associated chondroitin
            proteoglycan)
          Length = 1191

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 33/162 (20%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKL-------------DPPEGGTFLD------ 558
            K E +++T+ +V+K+F  +F  L+PG  A L             D  EG    +      
Sbjct: 1025 KYEAIQLTFKQVSKNFSEVFQKLVPGAKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQ 1084

Query: 557  ----------GLEVRVAFGTVWKQS----LSELSGGQRXXXXXXXXXXXXLFKPAPLYIL 420
                      G+ +RV+F    KQ     + +LSGGQ+               PAP Y+ 
Sbjct: 1085 SSVPSVDQFTGVGIRVSF--TGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLF 1142

Query: 419  DEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNAN 294
            DE+D ALD  H + +  MI      +QFI  + +  +  +A+
Sbjct: 1143 DEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESAD 1184

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>SMC4_XENLA (P50532) Structural maintenance of chromosome 4|
            (Chromosome-associated protein C) (Chromosome assembly
            protein XCAP-C)
          Length = 1290

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 27/77 (35%), Positives = 41/77 (53%)
 Frame = -3

Query: 524  WKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQ 345
            WK+ +  LSGG++             +KP PLY +DE+DAALD  +   +   I      
Sbjct: 1179 WKK-IFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDFKNVSIVAFYIYEQTKN 1237

Query: 344  SQFIVVSLKEGMFNNAN 294
            +QFI++SL+  MF  A+
Sbjct: 1238 AQFIIISLRNNMFEIAD 1254

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>SMC4_MICAR (Q9ERA5) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (XCAP-C homolog)
            (Fragment)
          Length = 1243

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 26/73 (35%), Positives = 39/73 (53%)
 Frame = -3

Query: 524  WKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQ 345
            WK+ +  LSGG++             +KP PLY +DE+DAALD  +   +   I      
Sbjct: 1140 WKK-IFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDFKNVSIVAFYIYEQTKN 1198

Query: 344  SQFIVVSLKEGMF 306
            +QFI++SL+  MF
Sbjct: 1199 AQFIIISLRNNMF 1211

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>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
            homolog)
          Length = 1288

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 26/73 (35%), Positives = 39/73 (53%)
 Frame = -3

Query: 524  WKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQ 345
            WK+ +  LSGG++             +KP PLY +DE+DAALD  +   +   I      
Sbjct: 1185 WKK-IFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDFKNVSIVAFYIYEQTKN 1243

Query: 344  SQFIVVSLKEGMF 306
            +QFI++SL+  MF
Sbjct: 1244 AQFIIISLRNNMF 1256

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>SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (XCAP-C homolog)
          Length = 1286

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 26/73 (35%), Positives = 39/73 (53%)
 Frame = -3

Query: 524  WKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQ 345
            WK+ +  LSGG++             +KP PLY +DE+DAALD  +   +   I      
Sbjct: 1183 WKK-IFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDFKNVSIVAFYIYEQTKN 1241

Query: 344  SQFIVVSLKEGMF 306
            +QFI++SL+  MF
Sbjct: 1242 AQFIIISLRNNMF 1254

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>SM1L2_MOUSE (Q920F6) Structural maintenance of chromosomes 1-like 2 protein|
            (SMC1beta protein)
          Length = 1248

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = -3

Query: 566  FLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSH 387
            +LDG+             +  LSGG++             F+PAP ++LDEVDAALD ++
Sbjct: 1102 YLDGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAVHSFRPAPFFVLDEVDAALDNTN 1161

Query: 386  TQNIGRMIKAHF-PQSQFIVVSLKEGMFNNANVI 288
               +   IK     Q Q I++SLKE  ++ A+ +
Sbjct: 1162 IGKVSSYIKEQSQEQFQMIIISLKEEFYSKADAL 1195

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>SM1L2_HUMAN (Q8NDV3) Structural maintenance of chromosome 1-like 2 protein|
            (SMC1beta protein)
          Length = 1235

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = -3

Query: 512  LSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHF-PQSQF 336
            +  LSGG++             F+PAP ++LDEVDAALD ++   +   IK     Q Q 
Sbjct: 1121 MDNLSGGEKCVAALALLFAVHSFRPAPFFVLDEVDAALDNTNIGKVSSYIKEQTQDQFQM 1180

Query: 335  IVVSLKEGMFNNANVI 288
            IV+SLKE  ++ A+ +
Sbjct: 1181 IVISLKEEFYSRADAL 1196

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>SMC_MYCTU (Q10970) Chromosome partition protein smc|
          Length = 1205

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
 Frame = -3

Query: 656  WLKVNKDFGSIFGTLLPGTMAKLDPPEGGTFLD-GLEVRVAFGTVWKQSLSELSGGQRXX 480
            ++ V ++F  +F  L PG   +L   E    L  G+EV           LS LSGG++  
Sbjct: 1051 FVDVEREFRGVFTALFPGGEGRLRLTEPDDMLTTGIEVEARPPGKKITRLSLLSGGEKAL 1110

Query: 479  XXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNN 300
                        +P+P YI+DEV+AALD  + + +  + +    QSQ I+++ ++     
Sbjct: 1111 TAVAMLVAIFRARPSPFYIMDEVEAALDDVNLRRLLSLFEQLREQSQIIIITHQKPTMEV 1170

Query: 299  ANVIFR-TKFVDGVSTV 252
            A+ ++  T   DG++ V
Sbjct: 1171 ADALYGVTMQNDGITAV 1187

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>SUDA_EMENI (Q00737) Chromosome segregation protein sudA (DA-box protein sudA)|
          Length = 1211

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
 Frame = -3

Query: 680  KKETLKVTWLKVNKDFGSIFGTLLPGTMAKL------------------DPPEGGTFLD- 558
            K E ++ T+ +V+++F +IF  L+P    +L                  +  E    ++ 
Sbjct: 1027 KDEAIERTFKQVSREFATIFEKLVPAGRGRLIIQRKTDRTQRAEDDLESEDEEAKHSVEN 1086

Query: 557  --GLEVRVAFGTVW--KQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLS 390
              G+ + V+F +    +Q + +LSGGQ+               PAP Y+ DE+DA LD  
Sbjct: 1087 YVGVGISVSFNSKHDDQQRIQQLSGGQKSLCALALVFAIQACDPAPFYLFDEIDANLDAQ 1146

Query: 389  HTQNIGRMIK--AHFPQSQFIVVSLKEGMFNNANVIFRTKFVDGVSTV 252
            +   + +M+K  +     QFI  + +  M + A   +   F    ST+
Sbjct: 1147 YRTAVAQMLKTISDSTNGQFICTTFRPEMLHVAEKCYGVSFRQKASTI 1194

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>SMC1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1 protein|
            (SMC-protein)
          Length = 1233

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = -3

Query: 566  FLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSH 387
            +LDG+           + +  LSGG++             +KPAP ++LDE+DAALD ++
Sbjct: 1107 YLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTN 1166

Query: 386  TQNIGRMIKAHFP-QSQFIVVSLKEGMFNNA 297
               +   IK       Q IV+SLKE  +  A
Sbjct: 1167 IGKVANYIKEQSTCNFQAIVISLKEEFYTKA 1197

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>SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like 1 protein|
            (SMC1alpha protein) (Chromosome segregation protein SmcB)
            (Sb1.8)
          Length = 1233

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = -3

Query: 566  FLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSH 387
            +LDG+           + +  LSGG++             +KPAP ++LDE+DAALD ++
Sbjct: 1107 YLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTN 1166

Query: 386  TQNIGRMIKAHFP-QSQFIVVSLKEGMFNNA 297
               +   IK       Q IV+SLKE  +  A
Sbjct: 1167 IGKVANYIKEQSTCNFQAIVISLKEEFYTKA 1197

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>SMC1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like 1 protein|
            (SMC1alpha protein) (DXS423E protein) (Sb1.8)
          Length = 1233

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = -3

Query: 566  FLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSH 387
            +LDG+           + +  LSGG++             +KPAP ++LDE+DAALD ++
Sbjct: 1107 YLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTN 1166

Query: 386  TQNIGRMIKAHFP-QSQFIVVSLKEGMFNNA 297
               +   IK       Q IV+SLKE  +  A
Sbjct: 1167 IGKVANYIKEQSTCNFQAIVISLKEEFYTKA 1197

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>SMC1A_BOVIN (O97593) Structural maintenance of chromosome 1-like 1 protein|
            (SMC-protein)
          Length = 1233

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = -3

Query: 566  FLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSH 387
            +LDG+           + +  LSGG++             +KPAP ++LDE+DAALD ++
Sbjct: 1107 YLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTN 1166

Query: 386  TQNIGRMIKAHFP-QSQFIVVSLKEGMFNNA 297
               +   IK       Q IV+SLKE  +  A
Sbjct: 1167 IGKVANYIKEQSTCNFQAIVISLKEEFYTKA 1197

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>SMC1A_XENLA (O93308) Structural maintenance of chromosome 1 protein (xSMC1)|
          Length = 1232

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = -3

Query: 566  FLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSH 387
            +LDG+           + +  LSGG++             +KP+P ++LDE+DAALD ++
Sbjct: 1107 YLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPSPFFVLDEIDAALDNTN 1166

Query: 386  TQNIGRMIKAH-FPQSQFIVVSLKEGMFNNA 297
               +   IK       Q IV+SLKE  +  A
Sbjct: 1167 IGKVANYIKEQSMSNFQAIVISLKEEFYTKA 1197

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>SMC_MYCLE (Q9CBT5) Chromosome partition protein smc|
          Length = 1203

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
 Frame = -3

Query: 656  WLKVNKDFGSIFGTLLPGTMAKL---DPPEGGTFLDGLEVRVAFGTVWKQSLSELSGGQR 486
            ++ V ++F  +F +L PG   +L   DP +  T   G+EV           LS LSGG++
Sbjct: 1049 FVDVEREFRGVFTSLFPGGEGRLRLTDPDDMLT--TGIEVEARPSGKKVSRLSLLSGGEK 1106

Query: 485  XXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMF 306
                          +P+P YI+DEV+AALD  +   +  + +    QSQ I+++ ++   
Sbjct: 1107 SLIAVAMLVAIFKARPSPFYIMDEVEAALDDVNLCRLIGVFEQLRGQSQLIIITHQKPTM 1166

Query: 305  NNANVIFR-TKFVDGVSTV 252
              A+ ++  T   DG++ V
Sbjct: 1167 EVADTLYGVTMQGDGITAV 1185

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>P115_MYCHR (P41508) Protein P115|
          Length = 979

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
 Frame = -3

Query: 647  VNKDFGSIFGTLLPGTMAKLDPPEGGTFLD-GLEVRVAFGTVWKQSLSELSGGQRXXXXX 471
            VN +F  +F  +  G  A++   +    L+ G+E+         ++L   SGG++     
Sbjct: 829  VNNEFNMVFQKMFGGGKAEIHFTDKNDILNSGVEISAQPPGKTIKNLRLFSGGEKAIIAI 888

Query: 470  XXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANV 291
                     +P PL ILDEV+AALD S+       +K     +QF++++ + G  +  + 
Sbjct: 889  SLLFAILKARPIPLCILDEVEAALDESNVIRYVEFLKLLKENTQFLIITHRSGTMSRVDQ 948

Query: 290  IFR-TKFVDGVSTVTRTVPSKQK 225
            +   T    GV+++     SK K
Sbjct: 949  LLGVTMQKRGVTSIFSVELSKAK 971

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>YAT3_RHORU (P15016) Hypothetical protein in ATPase CF(0) subunits 3'region|
           (URF3) (Fragment)
          Length = 173

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
 Frame = -3

Query: 677 KETLKVTWLKVNKDFGSIFGTLLPGTMAKLDPPEGGTFLD-GLEVRVAFGTVWKQSLSEL 501
           +  L  ++ +V+  F ++F  L  G  A L   E    L+ GLE+  +      QSL  L
Sbjct: 6   RSRLLESFQRVDGHFRTLFLKLFGGGRAHLTLIESDDPLEAGLEIMASPPGKRLQSLGLL 65

Query: 500 SGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIK 360
           SGG++            L  PAP+ +LDEVDA LD ++      M++
Sbjct: 66  SGGEQALTATALLFAVFLTNPAPICVLDEVDAPLDDANVDRFCAMLR 112

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>P115_MYCGE (P47540) Protein P115 homolog|
          Length = 982

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = -3

Query: 515  SLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQF 336
            +L  LSGG++                 PL ILDE ++ALD ++ +    +IK     +QF
Sbjct: 876  NLMLLSGGEKTLVALSVLFSILKVSAFPLVILDEAESALDPANVERFANIIKTASKNTQF 935

Query: 335  IVVSLKEGMFNNANVI 288
            ++++ ++G     +++
Sbjct: 936  LIITHRQGTMMKCDML 951

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>P115_MYCPN (P75361) Protein P115 homolog|
          Length = 982

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
 Frame = -3

Query: 650  KVNKDFGSIFGTLLPGTMAKLDPPE-GGTFLDGLEVRVAFGTVWKQSLSELSGGQRXXXX 474
            KVN +    F  L  G   ++   +     L G+EV          +L  LSGG++    
Sbjct: 830  KVNAELPKTFNYLFGGGSCQIRYTDTDNVLLSGIEVFANPPGKNVANLMLLSGGEKTLVA 889

Query: 473  XXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNAN 294
                         PL ILDE ++ALD ++ +    +I      +QF++++ ++G     +
Sbjct: 890  LSVLFSILRVSAFPLVILDEAESALDPANVERFANIIGNSSNNTQFLIITHRQGTMMKCD 949

Query: 293  VI 288
            ++
Sbjct: 950  ML 951

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>YBBL_ECOLI (P77279) Hypothetical ABC transporter ATP-binding protein ybbL|
          Length = 225

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 25/85 (29%), Positives = 42/85 (49%)
 Frame = -3

Query: 581 PEGGTFLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAA 402
           P+   FLD LE      ++  ++++ELSGG++             F P  L +LDE+ +A
Sbjct: 112 PDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQ---FMPKVL-LLDEITSA 167

Query: 401 LDLSHTQNIGRMIKAHFPQSQFIVV 327
           LD S+  N+  MI  +  +    V+
Sbjct: 168 LDESNKHNVNEMIHRYVREQNIAVL 192

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>CCMA_XANCP (Q8P8M1) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 214

 Score = 37.0 bits (84), Expect = 0.056
 Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
 Frame = -3

Query: 611 LPGTMAKLDPPEGGTFLDGLEVR------------VAFGTVWKQSLSELSGGQRXXXXXX 468
           LPG  A L   E   FL GL  R            V         + +LS GQR      
Sbjct: 90  LPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDALVRQLSAGQRKRLALA 149

Query: 467 XXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAH 354
                    PAPL++LDE  A LDL     + RMI AH
Sbjct: 150 RLW----LSPAPLWLLDEPYANLDLEGITLVNRMISAH 183

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>CCMA_XANAC (Q8PK53) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 214

 Score = 37.0 bits (84), Expect = 0.056
 Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
 Frame = -3

Query: 611 LPGTMAKLDPPEGGTFLDGLEVR------------VAFGTVWKQSLSELSGGQRXXXXXX 468
           LPG  A L   E   FL GL  R            V         + +LS GQR      
Sbjct: 90  LPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDALVRQLSAGQRKRLALA 149

Query: 467 XXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAH 354
                    PAPL++LDE  A LDL     + RMI AH
Sbjct: 150 RLW----LSPAPLWLLDEPYANLDLDGITLVNRMISAH 183

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>MSBA_RALSO (Q8XXB6) Lipid A export ATP-binding/permease protein msbA|
          Length = 592

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = -3

Query: 509 SELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIV 330
           S+LSGGQR             +K AP+ ILDE  +ALD    + +   ++A       +V
Sbjct: 488 SKLSGGQRQRLAIARAV----YKDAPILILDEATSALDSESERQVQAALEALMQGRTTLV 543

Query: 329 VSLKEGMFNNANVI 288
           ++ +     NA+ I
Sbjct: 544 IAHRLSTIENADRI 557

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>COBQ_STRCO (Q9RJ20) Cobyric acid synthase|
          Length = 502

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 25/74 (33%), Positives = 30/74 (40%)
 Frame = -3

Query: 575 GGTFLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALD 396
           G  FLDG  V   +GT W  SL E  G +R             F PAP    D   AAL 
Sbjct: 407 GAPFLDGCRVGRTWGTHWHGSL-ESDGFRRAFLREVAAAAGRRFVPAP----DTSFAALR 461

Query: 395 LSHTQNIGRMIKAH 354
                 +G +I+ H
Sbjct: 462 EEQLDRLGDLIEHH 475

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>MSBA_CHRVO (Q7NZU6) Lipid A export ATP-binding/permease protein msbA|
          Length = 584

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 28/91 (30%), Positives = 40/91 (43%)
 Frame = -3

Query: 560 DGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQ 381
           DGLE      TV  ++ + LSGGQR              K APL ILDE  +ALD    +
Sbjct: 466 DGLE------TVIGENGARLSGGQRQRLAIARAL----LKNAPLLILDEATSALDTQSER 515

Query: 380 NIGRMIKAHFPQSQFIVVSLKEGMFNNANVI 288
            +   ++        IV++ +     NA+ I
Sbjct: 516 LVQAALENLMKNRTTIVIAHRLSTIENADRI 546

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>CCMA_RHIME (Q92L55) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 207

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 434 PLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGM-FNNANVIFRTKFV 270
           P+++LDE  AALDLS  +    ++ AH  +   +V +  + + F  A  +  T FV
Sbjct: 151 PIWLLDEPTAALDLSADRLFAGLVAAHLDRGGIVVAATHQPLGFAGAKSLEMTGFV 206

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>MSBA_BORPE (Q7VWD8) Lipid A export ATP-binding/permease protein msbA|
          Length = 623

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/93 (27%), Positives = 42/93 (45%)
 Frame = -3

Query: 566 FLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSH 387
           F+DGL + +   T   Q+ + LSGGQR              K AP+ ILDE  +ALD   
Sbjct: 502 FVDGLPLGIH--TPVGQNAARLSGGQRQRLAIARAL----IKNAPVLILDEATSALDNES 555

Query: 386 TQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVI 288
            + +   ++        +V++ +     NA+ I
Sbjct: 556 ERQVQASLERLMRGRTTLVIAHRLSTVQNADRI 588

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>MSBA_BORPA (Q7W9N7) Lipid A export ATP-binding/permease protein msbA|
          Length = 623

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/93 (27%), Positives = 42/93 (45%)
 Frame = -3

Query: 566 FLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSH 387
           F+DGL + +   T   Q+ + LSGGQR              K AP+ ILDE  +ALD   
Sbjct: 502 FVDGLPLGIH--TPVGQNAARLSGGQRQRLAIARAL----IKNAPVLILDEATSALDNES 555

Query: 386 TQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVI 288
            + +   ++        +V++ +     NA+ I
Sbjct: 556 ERQVQASLERLMRGRTTLVIAHRLSTVQNADRI 588

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>MSBA_BORBR (Q7WH20) Lipid A export ATP-binding/permease protein msbA|
          Length = 623

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/93 (27%), Positives = 42/93 (45%)
 Frame = -3

Query: 566 FLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSH 387
           F+DGL + +   T   Q+ + LSGGQR              K AP+ ILDE  +ALD   
Sbjct: 502 FVDGLPLGIH--TPVGQNAARLSGGQRQRLAIARAL----IKNAPVLILDEATSALDNES 555

Query: 386 TQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVI 288
            + +   ++        +V++ +     NA+ I
Sbjct: 556 ERQVQASLERLMRGRTTLVIAHRLSTVQNADRI 588

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>MSBA_METCA (Q60AA3) Lipid A export ATP-binding/permease protein msbA|
          Length = 601

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -3

Query: 536 FGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKA 357
           F T+  Q    LSGGQR              K AP+ ILDE  +ALD    + + + ++ 
Sbjct: 475 FDTLVGQQGIVLSGGQRQRIAIARAL----LKNAPILILDEATSALDAESERYVQQALEV 530

Query: 356 HFPQSQFIVVSLKEGMFNNANVI 288
                  +V++ +     NA+ I
Sbjct: 531 LMQNRTTLVIAHRLSTIQNADQI 553

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>ABCX_GALSU (P35020) Probable ATP-dependent transporter ycf16|
          Length = 257

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 437 APLYILDEVDAALDLSHTQNIGRMIKAHFPQSQF 336
           A L ILDE D+ LD+   Q+I   IK+    SQF
Sbjct: 171 AKLAILDETDSGLDIDALQDISNAIKSILKMSQF 204

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>MSBA_DESPS (Q6AJW3) Lipid A export ATP-binding/permease protein msbA|
          Length = 572

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 25/98 (25%), Positives = 42/98 (42%)
 Frame = -3

Query: 569 TFLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLS 390
           TF++  E+   F T   +  ++LSGGQR                AP+ ILDE  +ALD  
Sbjct: 454 TFIE--ELPNGFDTALGEGGAKLSGGQRQRISIARALLAD----APILILDEATSALDTE 507

Query: 389 HTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVIFRTK 276
             + + + ++         V++ +     NA+ I   K
Sbjct: 508 SEREVQKALENLMQNRTTFVIAHRLSTIKNASRIVVVK 545

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>FECE_ECOLI (P15031) Iron(III) dicitrate transport ATP-binding protein fecE|
          Length = 255

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 27/105 (25%), Positives = 47/105 (44%)
 Frame = -3

Query: 629 SIFGTLLPGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXX 450
           S++G L     A+++     T ++ L VR          L+ELSGGQR            
Sbjct: 106 SLWGRLSAEDNARVNVAMNQTRINHLAVR---------RLTELSGGQRQRAFLAMVLA-- 154

Query: 449 LFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKE 315
             +  P+ +LDE    LD++H  ++ R++     Q + +V  L +
Sbjct: 155 --QNTPVVLLDEPTTYLDINHQVDLMRLMGELRTQGKTVVAVLHD 197

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>NIST_LACLA (Q03203) Nisin transport ATP-binding protein nisT|
          Length = 600

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 19/43 (44%), Positives = 21/43 (48%)
 Frame = -3

Query: 524 WKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALD 396
           W Q   +LSGGQ              FK A +YILDE  AALD
Sbjct: 488 WFQEGHQLSGGQ----WQKIALARTFFKKASIYILDEPSAALD 526

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>MSBA_COXBU (Q83D84) Lipid A export ATP-binding/permease protein msbA|
          Length = 589

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = -3

Query: 530 TVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHF 351
           TV  ++   LSGGQR             FK AP++ILDE  ++LD    ++I   +    
Sbjct: 469 TVIGENGVRLSGGQRQRIAIARAL----FKNAPIHILDEATSSLDTHSERHIQAALDNLM 524

Query: 350 PQSQFIVVSLKEGMFNNANVI 288
            Q   +V++ +      A+ I
Sbjct: 525 DQCTTLVIAHRLSTIERADWI 545

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>Y131_METJA (Q57595) Hypothetical protein MJ0131|
          Length = 103

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -1

Query: 610 YLVQWQSLILLKVVPSWMVLKFGWHLEQSGSN 515
           ++V+W  L++   VPSW+ L FG  L+ SG+N
Sbjct: 68  FVVEWSYLVVQTTVPSWIGLLFG--LKLSGNN 97

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>MSBA_XYLFT (Q87EF0) Lipid A export ATP-binding/permease protein msbA|
          Length = 589

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -3

Query: 503 LSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVS 324
           LSGGQR              K AP+ ILDE  AALD    + +   ++   P+   +V++
Sbjct: 485 LSGGQRQRLAIARAM----LKDAPILILDEATAALDNESERLVQDALQRLMPERTTLVIA 540

Query: 323 LKEGMFNNANVI 288
            +     +A+ +
Sbjct: 541 HRLSTIKHADQV 552

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>MSBA_XYLFA (Q9PEE7) Lipid A export ATP-binding/permease protein msbA|
          Length = 589

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -3

Query: 503 LSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVS 324
           LSGGQR              K AP+ ILDE  AALD    + +   ++   P+   +V++
Sbjct: 485 LSGGQRQRLAIARAM----LKDAPILILDEATAALDNESERLVQDALQRLMPERTTLVIA 540

Query: 323 LKEGMFNNANVI 288
            +     +A+ +
Sbjct: 541 HRLSTIKHADQV 552

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>Y065_MYCGE (P47311) Hypothetical ABC transporter ATP-binding protein MG065|
          Length = 466

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
 Frame = -3

Query: 596 AKLDP-PEGGTFLDGLEVRVAFGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYIL 420
           A L P P     +D L   V   ++ K+  +ELSGGQ+             F   PL I 
Sbjct: 339 ANLQPDPSKRISIDALLEAVGMDSLQKKLPNELSGGQQ-----QRVSIARAFAKNPLLIF 393

Query: 419 -DEVDAALDLSHTQNIGRM---IKAHFPQSQFIVVSLKEGMFNNANVIFRTKFVDG-VST 255
            DE   ALDL  TQ + +    IK  + Q+  I+V+    + N A+++      DG + +
Sbjct: 394 GDEPTGALDLEMTQIVLKQFLAIKKRY-QTTMIIVTHNNLIANLADLVIYV--ADGKIKS 450

Query: 254 VTRTVPSKQ 228
           + R +  KQ
Sbjct: 451 LHRNLNPKQ 459

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>KPST5_ECOLI (P24586) Polysialic acid transport ATP-binding protein kpsT|
          Length = 224

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -3

Query: 428 YILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVV-----SLKEGMFNNANVIFRTKFVDG 264
           YI+DEV A  D    +   ++ K    +S F++V     SLKE  F +  ++F+  ++ G
Sbjct: 146 YIVDEVTAVGDARFKEKCAQLFKERHKESSFLMVSHSLNSLKE--FCDVAIVFKNSYIIG 203

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>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC|
           1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose
           synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose
           synthase MUM4)
          Length = 667

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 147 LTAMTKEFFTVVFPESGTSSDKARLSFL 230
           +++ T + FTVV P++G S DKA L FL
Sbjct: 359 VSSNTVQTFTVVTPKNGDSGDKASLKFL 386

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>MCJD_ECOLI (Q9X2W0) Microcin J25 export ATP-binding/permease protein mcjD|
           (Microcin J25 secretion ATP-binding protein mcjD)
           (Microcin J25 immunity protein)
          Length = 580

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -3

Query: 443 KPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGMFNNANVIF 285
           KPA + I+DE  +ALD  +   I   I+ HFP +  I +S +  +   ++ ++
Sbjct: 498 KPA-IIIIDEATSALDYINESEILSSIRTHFPDALIINISHRINLLECSDCVY 549

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>MSBA_HAEIN (P44407) Lipid A export ATP-binding/permease protein msbA|
          Length = 587

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = -3

Query: 536 FGTVWKQSLSELSGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKA 357
           F TV  ++ + LSGGQR              + +P+ ILDE  +ALD    + I   ++ 
Sbjct: 475 FDTVIGENGTSLSGGQRQRLAIARAL----LRNSPVLILDEATSALDTESERAIQSALEE 530

Query: 356 HFPQSQFIVVSLKEGMFNNANVI 288
                  +V++ +     NA+ I
Sbjct: 531 LKKDRTVVVIAHRLSTIENADEI 553

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>RECN_STRCO (Q9S220) DNA repair protein recN (Recombination protein N)|
          Length = 572

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -3

Query: 500 SGGQRXXXXXXXXXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVS 324
           SGG+                P P Y+ DEVDA +       IGR +      +Q +VV+
Sbjct: 446 SGGELSRVMLAVEVVFAGTDPVPTYLFDEVDAGVGGKAAVEIGRRLARLARSAQVVVVT 504

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>YKC7_YEAST (P36101) Protein YKL027W|
          Length = 447

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 118 LDSLRSLKPLTCRLLASLYVCKPMY*LNITTWVMYNV 8
           +D L +LK    R+L  L     ++ L ITTW++ N+
Sbjct: 281 VDELSALKDFRVRILPVLGTMPSLFGLTITTWILSNI 317

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>XYNB_THESJ (O30360) Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan|
           xylohydrolase) (Xylan 1,4-beta-xylosidase)
          Length = 500

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 350 ENAPLSFYQCFGYGSDQGQHQPHLI 424
           EN P+ F     Y S QG++ PHLI
Sbjct: 218 ENVPVDFVSRHAYTSKQGEYTPHLI 242

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>CCMA_RHIET (Q52733) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 215

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 434 PLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGM-FNNANVIFRTKF 273
           P++ILDE  AALD S  +    +I+AH  +   ++ +  + +   NA  +  T F
Sbjct: 152 PVWILDEPTAALDASADRLFAGLIEAHLAKGGIVLAATHQPLGLKNAQELKMTGF 206

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>RAD50_PYRKO (Q5JHN1) DNA double-strand break repair rad50 ATPase|
          Length = 883

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
 Frame = -3

Query: 572  GTFLDGLEVRVAFGTVW---KQSLSELSGGQRXXXXXXXXXXXXLFKPAP--LYILDEVD 408
            G  +   E +V  G V+   +  L  LSGG+R            L+      L ILDE  
Sbjct: 765  GVTVKAEENKVRLGVVYNGKEYGLGFLSGGERIALGLAFRLALSLYLAGEISLLILDEPT 824

Query: 407  AALDLSHTQNIGRMIKAHFPQ-SQFIVVSLKEGMFNNANVIFRTKFVDGVSTV 252
              LD    + +  +++ +  +  Q IVVS  E + + A+ + R    +GVS V
Sbjct: 825  PYLDEERRRRLVDIMQRYLRKIPQVIVVSHDEELKDAADRVIRVSLENGVSVV 877

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>CCMA_YERPS (Q668T8) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 218

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
 Frame = -3

Query: 608 PGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQ------------SLSELSGGQRXXXXXXX 465
           PG  + L P E   F   +  +V    +W+              +S+LS GQ+       
Sbjct: 83  PGIKSVLTPFENLLFYQSVFQKVDSAAIWQALAQVGLVGYEDLPVSQLSAGQQRRVALAR 142

Query: 464 XXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGM 309
                   PAPL+ILDE   A+D      +  +   H  +   ++++  + +
Sbjct: 143 LW----LSPAPLWILDEPLTAIDKQGVSTLLALFVQHAAKGGMVLLTTHQDL 190

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>CCMA_YERPE (Q8ZD58) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 218

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
 Frame = -3

Query: 608 PGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQ------------SLSELSGGQRXXXXXXX 465
           PG  + L P E   F   +  +V    +W+              +S+LS GQ+       
Sbjct: 83  PGIKSVLTPFENLLFYQSVFQKVDSAAIWQALAQVGLVGYEDLPVSQLSAGQQRRVALAR 142

Query: 464 XXXXXLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPQSQFIVVSLKEGM 309
                   PAPL+ILDE   A+D      +  +   H  +   ++++  + +
Sbjct: 143 LW----LSPAPLWILDEPLTAIDKQGVSTLLALFVQHAAKGGMVLLTTHQDL 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,430,670
Number of Sequences: 219361
Number of extensions: 1934668
Number of successful extensions: 5162
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 4984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5157
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result