ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags18o11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK058791.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F06, full insert sequence Length = 1298 Score = 311 bits (157), Expect = 2e-81 Identities = 313/365 (85%) Strand = Plus / Minus Query: 352 gaagtaaggaaatcaatggtagcttttagcccatggatgaaaacatccacctcctctttt 411 ||||||||||||||||| ||| |||| ||| ||| || || ||||||||||||||||| Sbjct: 973 gaagtaaggaaatcaatagtatctttcagcgcatcgacaaagacatccacctcctctttg 914 Query: 412 gtgttgtagaagtgaagactagcacgggcgcttgcattgatgccaagggtgcgatgcaaa 471 || ||||||||||||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct: 913 gtattgtagaagtgaagactagcacgagcacttgcattgataccaagagttcgatgcaat 854 Query: 472 atctgtgcacaatgatgccctgaccgaatcgctatgccatgctggagatcaagaatttct 531 ||||||||||||||||| ||||||||||| || | |||||||||||| ||||||||||| Sbjct: 853 atctgtgcacaatgatggcctgaccgaattgccacgccatgctggaggtcaagaatttcg 794 Query: 532 gcaatatctgttggatgaacattctcaacattgaaagaacataaaggagcacggtgatca 591 ||||||||||||||||||||||| |||||||| ||||||||||| || || |||||| || Sbjct: 793 gcaatatctgttggatgaacattttcaacattaaaagaacataatggggcgcggtgaaca 734 Query: 592 ctctgagaaggcgccggaccatagatacgaacatttggaacggacagaaggctctcataa 651 | || | || || ||||| ||||| |||||||||||||| | | |||||||||||| Sbjct: 733 gtttggcatggagctggaccgtagatccgaacatttggaacagcaataaggctctcatag 674 Query: 652 aggtaagaccccaactctttctcatactcgtggatcctctgcatgccaaagtgtgacaga 711 || || | | ||||||| ||||||||||| |||||| |||||||||||| ||||||| | Sbjct: 673 agataggtcgccaactcattctcatactcatggatcttctgcatgccaatttgtgacaaa 614 Query: 712 taatc 716 ||||| Sbjct: 613 taatc 609
>dbj|AK070909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065F24, full insert sequence Length = 1162 Score = 303 bits (153), Expect = 4e-79 Identities = 312/365 (85%) Strand = Plus / Minus Query: 352 gaagtaaggaaatcaatggtagcttttagcccatggatgaaaacatccacctcctctttt 411 ||||||||||||||||| ||| |||| ||| ||| || || ||||||||||||||||| Sbjct: 786 gaagtaaggaaatcaatagtatctttcagcgcatcgacaaagacatccacctcctctttg 727 Query: 412 gtgttgtagaagtgaagactagcacgggcgcttgcattgatgccaagggtgcgatgcaaa 471 || ||||||||||||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct: 726 gtattgtagaagtgaagactagcacgagcacttgcattgataccaagagttcgatgcaat 667 Query: 472 atctgtgcacaatgatgccctgaccgaatcgctatgccatgctggagatcaagaatttct 531 ||||||||||||||||| ||||||||||| || | |||||||||||| ||||||||||| Sbjct: 666 atctgtgcacaatgatggcctgaccgaattgccacgccatgctggaggtcaagaatttcg 607 Query: 532 gcaatatctgttggatgaacattctcaacattgaaagaacataaaggagcacggtgatca 591 ||||||||||||||||||||||| |||||||| ||||||||||| || || |||||| || Sbjct: 606 gcaatatctgttggatgaacattttcaacattaaaagaacataatggggcgcggtgaaca 547 Query: 592 ctctgagaaggcgccggaccatagatacgaacatttggaacggacagaaggctctcataa 651 | || | || || ||||| ||||| |||||||||||||| | | ||||||||| || Sbjct: 546 gtttggcatggagctggaccgtagatccgaacatttggaacagcaataaggctctcgtag 487 Query: 652 aggtaagaccccaactctttctcatactcgtggatcctctgcatgccaaagtgtgacaga 711 || || | | ||||||| ||||||||||| |||||| |||||||||||| ||||||| | Sbjct: 486 agataggtcgccaactcattctcatactcatggatcttctgcatgccaatttgtgacaaa 427 Query: 712 taatc 716 ||||| Sbjct: 426 taatc 422
>gb|AY104487.1| Zea mays PCO115502 mRNA sequence Length = 803 Score = 232 bits (117), Expect = 1e-57 Identities = 258/305 (84%) Strand = Plus / Minus Query: 396 atccacctcctcttttgtgttgtagaagtgaagactagcacgggcgcttgcattgatgcc 455 ||||||||| |||||||||||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 591 atccacctcgtcttttgtgttgtagaagtgaagactcgcacgagcacttgcgttgatgcc 532 Query: 456 aagggtgcgatgcaaaatctgtgcacaatgatgccctgaccgaatcgctatgccatgctg 515 |||||| | |||||| ||||| || || |||||||| ||||||||||||| || |||||| Sbjct: 531 aagggtcctatgcaagatctgcgcgcagtgatgccccgaccgaatcgctacgctatgctg 472 Query: 516 gagatcaagaatttctgcaatatctgttggatgaacattctcaacattgaaagaacataa 575 ||||||||||| ||||| |||||||| ||||| || ||||| | |||||| || || || Sbjct: 471 cagatcaagaatctctgcgatatctgtaggatggacgttctcgatattgaaggagcacaa 412 Query: 576 aggagcacggtgatcactctgagaaggcgccggaccatagatacgaacatttggaacgga 635 ||||||||||| || |||| ||||||||||| ||||| || | ||||||||||| || Sbjct: 411 cggagcacggtggacagtctgggaaggcgccgggccatatatctggacatttggaacaga 352 Query: 636 cagaaggctctcataaaggtaagaccccaactctttctcatactcgtggatcctctgcat 695 |||||||| || || ||||| | ||||| |||||||||||| ||||||||| || ||| Sbjct: 351 gagaaggctttcgtagaggtatgtccccagctctttctcatattcgtggatctgctccat 292 Query: 696 gccaa 700 ||||| Sbjct: 291 gccaa 287
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 167 bits (84), Expect = 6e-38 Identities = 144/164 (87%) Strand = Plus / Plus Query: 352 gaagtaaggaaatcaatggtagcttttagcccatggatgaaaacatccacctcctctttt 411 ||||||||||||||||| ||| |||| ||| ||| || || ||||||||||||||||| Sbjct: 10962737 gaagtaaggaaatcaatagtatctttcagcgcatcgacaaagacatccacctcctctttg 10962796 Query: 412 gtgttgtagaagtgaagactagcacgggcgcttgcattgatgccaagggtgcgatgcaaa 471 || ||||||||||||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct: 10962797 gtattgtagaagtgaagactagcacgagcacttgcattgataccaagagttcgatgcaat 10962856 Query: 472 atctgtgcacaatgatgccctgaccgaatcgctatgccatgctg 515 ||||||||||||||||| ||||||||||| || | ||||||||| Sbjct: 10962857 atctgtgcacaatgatggcctgaccgaattgccacgccatgctg 10962900 Score = 107 bits (54), Expect = 5e-20 Identities = 117/138 (84%) Strand = Plus / Plus Query: 513 ctggagatcaagaatttctgcaatatctgttggatgaacattctcaacattgaaagaaca 572 |||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct: 10966982 ctggaggtcaagaatttcggcaatatctgttggatgaacattttcaacattaaaagaaca 10967041 Query: 573 taaaggagcacggtgatcactctgagaaggcgccggaccatagatacgaacatttggaac 632 ||| || || |||||| || | || | || || ||||| ||||| |||||||||||||| Sbjct: 10967042 taatggggcgcggtgaacagtttggcatggagctggaccgtagatccgaacatttggaac 10967101 Query: 633 ggacagaaggctctcata 650 | | |||||||||||| Sbjct: 10967102 agcaataaggctctcata 10967119 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Plus Query: 672 ctcatactcgtggatcctctgcatgccaaagtgtgacagataatc 716 ||||||||| |||||| |||||||||||| ||||||| |||||| Sbjct: 10967314 ctcatactcatggatcttctgcatgccaatttgtgacaaataatc 10967358
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 167 bits (84), Expect = 6e-38 Identities = 144/164 (87%) Strand = Plus / Plus Query: 352 gaagtaaggaaatcaatggtagcttttagcccatggatgaaaacatccacctcctctttt 411 ||||||||||||||||| ||| |||| ||| ||| || || ||||||||||||||||| Sbjct: 10962436 gaagtaaggaaatcaatagtatctttcagcgcatcgacaaagacatccacctcctctttg 10962495 Query: 412 gtgttgtagaagtgaagactagcacgggcgcttgcattgatgccaagggtgcgatgcaaa 471 || ||||||||||||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct: 10962496 gtattgtagaagtgaagactagcacgagcacttgcattgataccaagagttcgatgcaat 10962555 Query: 472 atctgtgcacaatgatgccctgaccgaatcgctatgccatgctg 515 ||||||||||||||||| ||||||||||| || | ||||||||| Sbjct: 10962556 atctgtgcacaatgatggcctgaccgaattgccacgccatgctg 10962599 Score = 107 bits (54), Expect = 5e-20 Identities = 117/138 (84%) Strand = Plus / Plus Query: 513 ctggagatcaagaatttctgcaatatctgttggatgaacattctcaacattgaaagaaca 572 |||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct: 10966681 ctggaggtcaagaatttcggcaatatctgttggatgaacattttcaacattaaaagaaca 10966740 Query: 573 taaaggagcacggtgatcactctgagaaggcgccggaccatagatacgaacatttggaac 632 ||| || || |||||| || | || | || || ||||| ||||| |||||||||||||| Sbjct: 10966741 taatggggcgcggtgaacagtttggcatggagctggaccgtagatccgaacatttggaac 10966800 Query: 633 ggacagaaggctctcata 650 | | |||||||||||| Sbjct: 10966801 agcaataaggctctcata 10966818 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Plus Query: 672 ctcatactcgtggatcctctgcatgccaaagtgtgacagataatc 716 ||||||||| |||||| |||||||||||| ||||||| |||||| Sbjct: 10967013 ctcatactcatggatcttctgcatgccaatttgtgacaaataatc 10967057
>emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC OSJNBb0034E16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124204 Score = 167 bits (84), Expect = 6e-38 Identities = 144/164 (87%) Strand = Plus / Plus Query: 352 gaagtaaggaaatcaatggtagcttttagcccatggatgaaaacatccacctcctctttt 411 ||||||||||||||||| ||| |||| ||| ||| || || ||||||||||||||||| Sbjct: 111800 gaagtaaggaaatcaatagtatctttcagcgcatcgacaaagacatccacctcctctttg 111859 Query: 412 gtgttgtagaagtgaagactagcacgggcgcttgcattgatgccaagggtgcgatgcaaa 471 || ||||||||||||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct: 111860 gtattgtagaagtgaagactagcacgagcacttgcattgataccaagagttcgatgcaat 111919 Query: 472 atctgtgcacaatgatgccctgaccgaatcgctatgccatgctg 515 ||||||||||||||||| ||||||||||| || | ||||||||| Sbjct: 111920 atctgtgcacaatgatggcctgaccgaattgccacgccatgctg 111963 Score = 107 bits (54), Expect = 5e-20 Identities = 117/138 (84%) Strand = Plus / Plus Query: 513 ctggagatcaagaatttctgcaatatctgttggatgaacattctcaacattgaaagaaca 572 |||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct: 116045 ctggaggtcaagaatttcggcaatatctgttggatgaacattttcaacattaaaagaaca 116104 Query: 573 taaaggagcacggtgatcactctgagaaggcgccggaccatagatacgaacatttggaac 632 ||| || || |||||| || | || | || || ||||| ||||| |||||||||||||| Sbjct: 116105 taatggggcgcggtgaacagtttggcatggagctggaccgtagatccgaacatttggaac 116164 Query: 633 ggacagaaggctctcata 650 | | |||||||||||| Sbjct: 116165 agcaataaggctctcata 116182 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Plus Query: 672 ctcatactcgtggatcctctgcatgccaaagtgtgacagataatc 716 ||||||||| |||||| |||||||||||| ||||||| |||||| Sbjct: 116377 ctcatactcatggatcttctgcatgccaatttgtgacaaataatc 116421
>dbj|AK060246.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-H10, full insert sequence Length = 1344 Score = 93.7 bits (47), Expect = 8e-16 Identities = 86/99 (86%) Strand = Plus / Minus Query: 352 gaagtaaggaaatcaatggtagcttttagcccatggatgaaaacatccacctcctctttt 411 ||||||||||||||||| ||| |||| ||| ||| || || ||||||||||||||||| Sbjct: 994 gaagtaaggaaatcaatagtatctttcagcgcatcgacaaagacatccacctcctctttg 935 Query: 412 gtgttgtagaagtgaagactagcacgggcgcttgcattg 450 || |||||||||||||||| |||||| || ||||||||| Sbjct: 934 gtattgtagaagtgaagaccagcacgagcacttgcattg 896
>gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete sequence Length = 131133 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Minus Query: 610 ccatagatacgaacatttggaacggacagaaggctctcataaaggta 656 ||||||||||||| |||||| || |||||||| || ||||| ||||| Sbjct: 108614 ccatagatacgaatatttgggactgacagaagcctttcatacaggta 108568 Score = 42.1 bits (21), Expect = 2.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 403 tcctcttttgtgttgtagaagtgaagactagcacgggcgcttgcattga 451 ||||| || ||||||||||| | || |||||||| ||||||||||||| Sbjct: 109362 tcctccttagtgttgtagaaatagaggctagcacgtgcgcttgcattga 109314
>emb|X53828.1|GGLDHA Chicken LDH-A mRNA for lactate dehydrogenase A chain (EC 1.1.1.27) Length = 1575 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 506 tgccatgctggagatcaagaatttct 531 ||||||||||||||||||| |||||| Sbjct: 264 tgccatgctggagatcaagcatttct 239
>ref|NM_205284.1| Gallus gallus lactate dehydrogenase A (LDHA), mRNA Length = 1575 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 506 tgccatgctggagatcaagaatttct 531 ||||||||||||||||||| |||||| Sbjct: 264 tgccatgctggagatcaagcatttct 239
>ref|NM_153800.2| Mus musculus Rho GTPase activating protein 22 (Arhgap22), mRNA Length = 2597 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 tatgccatgctggagatcaag 524 ||||||||||||||||||||| Sbjct: 2090 tatgccatgctggagatcaag 2110
>gb|AY541447.1| Mus musculus GTPase-activating protein p68RacGAP mRNA, complete cds Length = 2429 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 tatgccatgctggagatcaag 524 ||||||||||||||||||||| Sbjct: 1921 tatgccatgctggagatcaag 1941
>gb|BC038272.1| Mus musculus Rho GTPase activating protein 22, mRNA (cDNA clone MGC:47316 IMAGE:4237331), complete cds Length = 2108 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 tatgccatgctggagatcaag 524 ||||||||||||||||||||| Sbjct: 1586 tatgccatgctggagatcaag 1606
>ref|XM_740960.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000162.02.0) partial mRNA Length = 642 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 tttatatataggaaatataaa 149 ||||||||||||||||||||| Sbjct: 525 tttatatataggaaatataaa 505
>dbj|AK144277.1| Mus musculus 16 days neonate male diencephalon cDNA, RIKEN full-length enriched library, clone:G630005M02 product:unclassifiable, full insert sequence Length = 2258 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 tatgccatgctggagatcaag 524 ||||||||||||||||||||| Sbjct: 719 tatgccatgctggagatcaag 699
>dbj|AK078218.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430517K22 product:hypothetical RhoGAP domain/Pleckstrin homology (PH) domain containing protein, full insert sequence Length = 2485 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 tatgccatgctggagatcaag 524 ||||||||||||||||||||| Sbjct: 1977 tatgccatgctggagatcaag 1997
>dbj|AK052541.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430047E06 product:Rho GTPase activating protein 22, full insert sequence Length = 2243 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 tatgccatgctggagatcaag 524 ||||||||||||||||||||| Sbjct: 1734 tatgccatgctggagatcaag 1754
>dbj|AK046097.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230341L19 product:hypothetical RhoGAP domain/Pleckstrin homology (PH) domain containing protein, full insert sequence Length = 2597 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 tatgccatgctggagatcaag 524 ||||||||||||||||||||| Sbjct: 2090 tatgccatgctggagatcaag 2110
>ref|XM_224637.3| PREDICTED: Rattus norvegicus Rho GTPase activating protein 22 (predicted) (Arhgap22_predicted), mRNA Length = 4215 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 tatgccatgctggagatcaag 524 ||||||||||||||||||||| Sbjct: 3715 tatgccatgctggagatcaag 3735
>gb|AC154649.3| Mus musculus BAC clone RP23-156O5 from chromosome 14, complete sequence Length = 227676 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 tatgccatgctggagatcaag 524 ||||||||||||||||||||| Sbjct: 81269 tatgccatgctggagatcaag 81289 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,960,455 Number of Sequences: 3902068 Number of extensions: 6960455 Number of successful extensions: 123800 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123695 Number of HSP's gapped (non-prelim): 100 length of query: 734 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 711 effective length of database: 17,143,297,704 effective search space: 12188884667544 effective search space used: 12188884667544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
