ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18o09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete se... 248 2e-62
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
3dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
4dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
5ref|XM_476630.1| Oryza sativa (japonica cultivar-group), mRNA 78 4e-11
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
7dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
8dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
9dbj|AK105239.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
10ref|XM_476629.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.13
11gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome... 46 0.13
12gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.13
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
14dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 46 0.13
15dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.13
17ref|XM_481221.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.53
18ref|XM_463821.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.53
19gb|AY340220.1| Oryza sativa (japonica cultivar-group) hydroperox... 44 0.53
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
22dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.53
23dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
24dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
25dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
26dbj|AK109408.2| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.53
27dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
28dbj|AK105694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.53
29dbj|AK100012.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.53
30ref|XM_473241.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
31gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome ... 42 2.1
32emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 2.1
33emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 42 2.1
34emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 42 2.1
35emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete ... 42 2.1
36emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4,... 42 2.1
37gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 2.1
38dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
39dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
40dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 2.1
41ref|XM_558384.1| Anopheles gambiae str. PEST ENSANGP00000026527 ... 42 2.1
42ref|XM_314268.2| Anopheles gambiae str. PEST ENSANGP00000000964 ... 42 2.1
43emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 2.1
44gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 2.1
45gb|AE010355.1| Methanopyrus kandleri AV19 section 54 of 157 of t... 40 8.2
46gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 8.2
47gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 8.2
48gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic m... 40 8.2
49gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 8.2
50gb|AY281376.1| Hypocrea jecorina strain QM6a Axe2 (axe2) mRNA, c... 40 8.2
51gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 8.2
52dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 8.2
53gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 8.2
54dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.2
55gb|BC083664.1| Rattus norvegicus similar to Hypothetical protein... 40 8.2
56ref|NM_001014052.1| Rattus norvegicus similar to Hypothetical pr... 40 8.2 
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence
          Length = 285444

 Score =  248 bits (125), Expect = 2e-62
 Identities = 275/325 (84%)
 Strand = Plus / Minus

                                                                          
Query: 274    agcttgacgatgtcatggacgacgccggaatcctcctcgatgccggagaaaggtagcccg 333
              |||||||| ||||| |||||||||||||  ||||||||     ||||||| || ||||||
Sbjct: 285438 agcttgacaatgtcgtggacgacgccggcctcctcctctgcatcggagaacggcagcccg 285379

                                                                          
Query: 334    acgaaccgggccagcttcctgacgtgctccgccgggtctcgcagcagctcctcgtaccgc 393
              |||||||| ||||||| |||||| | ||| || ||||  |||||||||||||||||||||
Sbjct: 285378 acgaaccgtgccagctccctgaccttctcggcggggttgcgcagcagctcctcgtaccgc 285319

                                                                          
Query: 394    aggaagagcacactgtccggcctcgccgtgctggcgctccagtagccgaggatgtggtcc 453
              | ||| ||||| |  |||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 285318 aagaatagcacgccatccggcctcgccgtgctggcgcgccagtagccgaggatatggtcc 285259

                                                                          
Query: 454    catactggtccgtaccccacggtgccgctgcacacggactcgaagacgtcggcaaacgcc 513
              || || || ||||||  ||  | |||||||||||||||||||| || ||| || | || |
Sbjct: 285258 cagaccggcccgtacggcattgcgccgctgcacacggactcgaggaggtcagccagcggc 285199

                                                                          
Query: 514    agctccggatgcagccgccggtggaagtgccaccgcgagaccaccatgtccttgggctcc 573
              || || || |||| ||||||| ||||||||||| ||||||  ||||||||||||||||||
Sbjct: 285198 aggtcaggctgcaaccgccggaggaagtgccactgcgagatgaccatgtccttgggctcc 285139

                                       
Query: 574    ctgcagacgtacacgaccttacacc 598
              ||||||| |||||||||||| ||||
Sbjct: 285138 ctgcagatgtacacgaccttgcacc 285114
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 1e-20
 Identities = 118/139 (84%)
 Strand = Plus / Minus

                                                                           
Query: 317     cggagaaaggtagcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgca 376
               ||||||| || |||||||||||||| |||| ||||| ||||| | | || ||||| ||||
Sbjct: 7945680 cggagaacggcagcccgacgaaccgcgccatcttccggacgttcccggcagggtcacgca 7945621

                                                                           
Query: 377     gcagctcctcgtaccgcaggaagagcacactgtccggcctcgccgtgctggcgctccagt 436
               ||| ||||||||||||||||||||||||  ||||||||  | | ||||| |||  |||||
Sbjct: 7945620 gcaactcctcgtaccgcaggaagagcacgttgtccggcacctcggtgctcgcgtgccagt 7945561

                                  
Query: 437     agccgaggatgtggtccca 455
               ||||||||||||| |||||
Sbjct: 7945560 agccgaggatgtgatccca 7945542



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                           
Query: 105     cttgtcggcgacgatctcgtccaggcgccgcgccatgtcgggcgtcatgtggttcaccca 164
               |||||| |||||||| || ||||  || |||||||| || ||||||||||||||||||||
Sbjct: 7945892 cttgtcagcgacgatgtcatccacacggcgcgccatctccggcgtcatgtggttcaccca 7945833

                                   
Query: 165     gtcgccggccacgcccttcc 184
               ||| ||| ||||||||||||
Sbjct: 7945832 gtcaccgaccacgcccttcc 7945813



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 355      acgtgctccgccgggtctcgcagcagctcctcgtaccgcaggaagagcac 404
                |||||| |||||||||| |||  || |||||||||||  |||||||||||
Sbjct: 24908859 acgtgccccgccgggtcccgcttcatctcctcgtacctgaggaagagcac 24908908
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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046H10
          Length = 155544

 Score =  109 bits (55), Expect = 1e-20
 Identities = 118/139 (84%)
 Strand = Plus / Minus

                                                                         
Query: 317   cggagaaaggtagcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgca 376
             ||||||| || |||||||||||||| |||| ||||| ||||| | | || ||||| ||||
Sbjct: 53198 cggagaacggcagcccgacgaaccgcgccatcttccggacgttcccggcagggtcacgca 53139

                                                                         
Query: 377   gcagctcctcgtaccgcaggaagagcacactgtccggcctcgccgtgctggcgctccagt 436
             ||| ||||||||||||||||||||||||  ||||||||  | | ||||| |||  |||||
Sbjct: 53138 gcaactcctcgtaccgcaggaagagcacgttgtccggcacctcggtgctcgcgtgccagt 53079

                                
Query: 437   agccgaggatgtggtccca 455
             ||||||||||||| |||||
Sbjct: 53078 agccgaggatgtgatccca 53060



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                         
Query: 105   cttgtcggcgacgatctcgtccaggcgccgcgccatgtcgggcgtcatgtggttcaccca 164
             |||||| |||||||| || ||||  || |||||||| || ||||||||||||||||||||
Sbjct: 53410 cttgtcagcgacgatgtcatccacacggcgcgccatctccggcgtcatgtggttcaccca 53351

                                 
Query: 165   gtcgccggccacgcccttcc 184
             ||| ||| ||||||||||||
Sbjct: 53350 gtcaccgaccacgcccttcc 53331
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>dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054C04, full
           insert sequence
          Length = 1260

 Score =  101 bits (51), Expect = 3e-18
 Identities = 117/139 (84%)
 Strand = Plus / Minus

                                                                       
Query: 317 cggagaaaggtagcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgca 376
           ||||||| || |||||||||||||| |||| ||||| ||||| | | |  ||||| ||||
Sbjct: 881 cggagaacggcagcccgacgaaccgcgccatcttccggacgttcccggtagggtcacgca 822

                                                                       
Query: 377 gcagctcctcgtaccgcaggaagagcacactgtccggcctcgccgtgctggcgctccagt 436
           ||| ||||||||||||||||||||||||  ||||||||  | | ||||| |||  |||||
Sbjct: 821 gcaactcctcgtaccgcaggaagagcacgttgtccggcacctcggtgctcgcgtgccagt 762

                              
Query: 437 agccgaggatgtggtccca 455
           ||||||||||||| |||||
Sbjct: 761 agccgaggatgtgatccca 743



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                        
Query: 105  cttgtcggcgacgatctcgtccaggcgccgcgccatgtcgggcgtcatgtggttcaccca 164
            |||||| |||||||| || ||||  || |||||||| || ||||||||||||||||||||
Sbjct: 1093 cttgtcagcgacgatgtcatccacacggcgcgccatctccggcgtcatgtggttcaccca 1034

                                
Query: 165  gtcgccggccacgcccttcc 184
            ||| ||| ||||||||||||
Sbjct: 1033 gtcaccgaccacgcccttcc 1014
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>ref|XM_476630.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1644

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 105/127 (82%)
 Strand = Plus / Minus

                                                                       
Query: 329 gcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgcagcagctcctcgt 388
           ||||||||||||| |||||||||||||||   || ||||||||  | |||||||| ||||
Sbjct: 811 gcccgacgaaccgagccagcttcctgacgctatcagccgggtcatgtagcagctcttcgt 752

                                                                       
Query: 389 accgcaggaagagcacactgtccggcctcgccgtgctggcgctccagtagccgaggatgt 448
           ||| |||||| | |||  | || ||||||| | |||| ||  |||||||||||||||| |
Sbjct: 751 acctcaggaacaacaccgtctctggcctcgtcttgctcgcattccagtagccgaggatat 692

                  
Query: 449 ggtccca 455
           |||||||
Sbjct: 691 ggtccca 685
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                           
Query: 329     gcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgcagcagctcctcgt 388
               ||||||||||||| |||||||||||||||   || ||||||||  | |||||||| ||||
Sbjct: 2549747 gcccgacgaaccgagccagcttcctgacgctatcagccgggtcatgtagcagctcttcgt 2549806

                                                                           
Query: 389     accgcaggaagagcacactgtccggcctcgccgtgctggcgctccagtagccgaggatgt 448
               ||| |||||| | |||  | || ||||||| | |||| ||  |||||||||||||||| |
Sbjct: 2549807 acctcaggaacaacaccgtctctggcctcgtcttgctcgcattccagtagccgaggatat 2549866

                      
Query: 449     ggtccca 455
               |||||||
Sbjct: 2549867 ggtccca 2549873



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 145      ggcgtcatgtggttcacccagtcgccggccacgcccttcctgaatagcgcgtcgcgcgg 203
                |||| |||||||||| ||||||||||||| |||||||||||||| |  |||||||||||
Sbjct: 24792546 ggcgacatgtggttcgcccagtcgccggcgacgcccttcctgaagaaggcgtcgcgcgg 24792488



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 556      accatgtccttgggctccctgcagacgtacacgacctt 593
                |||||||||||||| |||||||||| ||| ||||||||
Sbjct: 24792129 accatgtccttggggtccctgcagatgtagacgacctt 24792092



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 432      ccagtagccgaggatgtggtccca 455
                ||||||||||||||||||||||||
Sbjct: 24792253 ccagtagccgaggatgtggtccca 24792230



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 409     tccggcctcgccgtgctggcgctccagtagccgaggatgtggt 451
               |||||||||||| |||| ||| ||||||| |||| ||||||||
Sbjct: 2541795 tccggcctcgccttgctcgcgttccagtaaccgacgatgtggt 2541837
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0022E03
          Length = 163032

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                          
Query: 329    gcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgcagcagctcctcgt 388
              ||||||||||||| |||||||||||||||   || ||||||||  | |||||||| ||||
Sbjct: 114727 gcccgacgaaccgagccagcttcctgacgctatcagccgggtcatgtagcagctcttcgt 114786

                                                                          
Query: 389    accgcaggaagagcacactgtccggcctcgccgtgctggcgctccagtagccgaggatgt 448
              ||| |||||| | |||  | || ||||||| | |||| ||  |||||||||||||||| |
Sbjct: 114787 acctcaggaacaacaccgtctctggcctcgtcttgctcgcattccagtagccgaggatat 114846

                     
Query: 449    ggtccca 455
              |||||||
Sbjct: 114847 ggtccca 114853



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 409    tccggcctcgccgtgctggcgctccagtagccgaggatgtggt 451
              |||||||||||| |||| ||| ||||||| |||| ||||||||
Sbjct: 106775 tccggcctcgccttgctcgcgttccagtaaccgacgatgtggt 106817
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>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0493C06
          Length = 158923

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 145   ggcgtcatgtggttcacccagtcgccggccacgcccttcctgaatagcgcgtcgcgcgg 203
             |||| |||||||||| ||||||||||||| |||||||||||||| |  |||||||||||
Sbjct: 26997 ggcgacatgtggttcgcccagtcgccggcgacgcccttcctgaagaaggcgtcgcgcgg 26939



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 556   accatgtccttgggctccctgcagacgtacacgacctt 593
             |||||||||||||| |||||||||| ||| ||||||||
Sbjct: 26580 accatgtccttggggtccctgcagatgtagacgacctt 26543



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 432   ccagtagccgaggatgtggtccca 455
             ||||||||||||||||||||||||
Sbjct: 26704 ccagtagccgaggatgtggtccca 26681
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>dbj|AK105239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B04, full
            insert sequence
          Length = 1369

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 145  ggcgtcatgtggttcacccagtcgccggccacgcccttcctgaatagcgcgtcgcgcgg 203
            |||| |||||||||| ||||||||||||| |||||||||||||| |  |||||||||||
Sbjct: 1019 ggcgacatgtggttcgcccagtcgccggcgacgcccttcctgaagaaggcgtcgcgcgg 961



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 556 accatgtccttgggctccctgcagacgtacacgacctt 593
           |||||||||||||| |||||||||| ||| ||||||||
Sbjct: 602 accatgtccttggggtccctgcagatgtagacgacctt 565



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 432 ccagtagccgaggatgtggtccca 455
           ||||||||||||||||||||||||
Sbjct: 726 ccagtagccgaggatgtggtccca 703
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>ref|XM_476629.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 576

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 409 tccggcctcgccgtgctggcgctccagtagccgaggatgtggt 451
           |||||||||||| |||| ||| ||||||| |||| ||||||||
Sbjct: 335 tccggcctcgccttgctcgcgttccagtaaccgacgatgtggt 293
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>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21,
              complete sequence
          Length = 146539

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 363    cgccgggtctcgcagcagctcctcgtaccgcaggaagag 401
              |||||| || ||||||| |||||||||||| ||||||||
Sbjct: 116415 cgccggctcgcgcagcatctcctcgtaccggaggaagag 116377



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 561    gtccttgggctccctgcagacgtacacga 589
              ||||||||| |||| ||||||||||||||
Sbjct: 116166 gtccttggggtcccggcagacgtacacga 116138
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>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10,
              complete sequence
          Length = 157609

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 363    cgccgggtctcgcagcagctcctcgtaccgcaggaagag 401
              |||||| || ||||||| |||||||||||| ||||||||
Sbjct: 142408 cgccggctcgcgcagcatctcctcgtaccggaggaagag 142370



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 561    gtccttgggctccctgcagacgtacacga 589
              ||||||||| |||| ||||||||||||||
Sbjct: 142159 gtccttggggtcccggcagacgtacacga 142131
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 363      cgccgggtctcgcagcagctcctcgtaccgcaggaagag 401
                |||||| || ||||||| |||||||||||| ||||||||
Sbjct: 17387633 cgccggctcgcgcagcatctcctcgtaccggaggaagag 17387595



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 561      gtccttgggctccctgcagacgtacacga 589
                ||||||||| |||| ||||||||||||||
Sbjct: 17387384 gtccttggggtcccggcagacgtacacga 17387356
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 410     ccggcctcgccgtgctggcgctc 432
               |||||||||||||||||||||||
Sbjct: 6107712 ccggcctcgccgtgctggcgctc 6107734
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>dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H02, full
           insert sequence
          Length = 1222

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 363 cgccgggtctcgcagcagctcctcgtaccgcaggaagag 401
           |||||| || ||||||| |||||||||||| ||||||||
Sbjct: 859 cgccggctcgcgcagcatctcctcgtaccggaggaagag 821



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 561 gtccttgggctccctgcagacgtacacga 589
           ||||||||| |||| ||||||||||||||
Sbjct: 610 gtccttggggtcccggcagacgtacacga 582
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 363      cgccgggtctcgcagcagctcctcgtaccgcaggaagag 401
                |||||| || ||||||| |||||||||||| ||||||||
Sbjct: 17481343 cgccggctcgcgcagcatctcctcgtaccggaggaagag 17481305



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 561      gtccttgggctccctgcagacgtacacga 589
                ||||||||| |||| ||||||||||||||
Sbjct: 17481094 gtccttggggtcccggcagacgtacacga 17481066
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>ref|XM_481221.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1065

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 422 tgctggcgctccagtagccgaggatgtggtccca 455
           |||| ||| ||||||||||||||||||| |||||
Sbjct: 721 tgcttgcgttccagtagccgaggatgtgatccca 688
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>ref|XM_463821.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1742

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 515  gctccggatgcagccgccggtg 536
            ||||||||||||||||||||||
Sbjct: 1118 gctccggatgcagccgccggtg 1139
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>gb|AY340220.1| Oryza sativa (japonica cultivar-group) hydroperoxide lyase (HPL1)
            gene, complete cds
          Length = 1731

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 515  gctccggatgcagccgccggtg 536
            ||||||||||||||||||||||
Sbjct: 1131 gctccggatgcagccgccggtg 1152
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 422      tgctggcgctccagtagccgaggatgtggtccca 455
                |||| ||| ||||||||||||||||||| |||||
Sbjct: 10717314 tgcttgcgttccagtagccgaggatgtgatccca 10717347
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 515    gctccggatgcagccgccggtg 536
              ||||||||||||||||||||||
Sbjct: 555696 gctccggatgcagccgccggtg 555717
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 240     ggcctccaggttcttgaggtgg 261
               ||||||||||||||||||||||
Sbjct: 2290645 ggcctccaggttcttgaggtgg 2290624
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>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0501G04
          Length = 156603

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 515   gctccggatgcagccgccggtg 536
             ||||||||||||||||||||||
Sbjct: 33749 gctccggatgcagccgccggtg 33770
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>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0530H05
          Length = 145952

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                              
Query: 355  acgtgctccgccgggtctcgcagcagctcctcgtaccgcaggaagagcac 404
            |||||| |||||||||| |||  || |||||||||||  |||||||||||
Sbjct: 3414 acgtgccccgccgggtcccgcttcatctcctcgtacctgaggaagagcac 3463
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>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0072A21
          Length = 158287

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 355    acgtgctccgccgggtctcgcagcagctcctcgtaccgcaggaagagcac 404
              |||||| |||||||||| |||  || |||||||||||  |||||||||||
Sbjct: 119942 acgtgccccgccgggtcccgcttcatctcctcgtacctgaggaagagcac 119991
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>dbj|AK109408.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D04, full
           insert sequence
          Length = 1274

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 355 acgtgctccgccgggtctcgcagcagctcctcgtaccgcaggaagagcac 404
           |||||| |||||||||| |||  || |||||||||||  |||||||||||
Sbjct: 823 acgtgccccgccgggtcccgcttcatctcctcgtacctgaggaagagcac 774
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>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091M20
          Length = 132976

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 422   tgctggcgctccagtagccgaggatgtggtccca 455
             |||| ||| ||||||||||||||||||| |||||
Sbjct: 14446 tgcttgcgttccagtagccgaggatgtgatccca 14479
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>dbj|AK105694.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C08, full
            insert sequence
          Length = 1742

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 515  gctccggatgcagccgccggtg 536
            ||||||||||||||||||||||
Sbjct: 1118 gctccggatgcagccgccggtg 1139
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>dbj|AK100012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140G07, full
            insert sequence
          Length = 1646

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 515  gctccggatgcagccgccggtg 536
            ||||||||||||||||||||||
Sbjct: 1061 gctccggatgcagccgccggtg 1082
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>ref|XM_473241.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 427 gcgctccagtagccgaggatgtggtccca 455
           |||| |||||||||||||| |||||||||
Sbjct: 677 gcgccccagtagccgaggacgtggtccca 649
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>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
             OSJNBa0043I04, complete sequence
          Length = 145191

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                         
Query: 108   gtcggcgacgatctcgtccaggcgccgcgccatgtcgggcgtcatgtggttcacccagtc 167
             |||| ||||||||| |||||| | |  ||||||  | ||||||||||||||   ||||||
Sbjct: 59492 gtcgtcgacgatcttgtccagcctcgccgccatcgccggcgtcatgtggttgcgccagtc 59433

                                  
Query: 168   gccggccacgcccttcctgaa 188
             |||||| || || ||||||||
Sbjct: 59432 gccggcgacacctttcctgaa 59412
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 281    cgatgtcatggacgacgccgg 301
              |||||||||||||||||||||
Sbjct: 328126 cgatgtcatggacgacgccgg 328146
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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 119    tctcgtccaggcgccgcgcca 139
              |||||||||||||||||||||
Sbjct: 166415 tctcgtccaggcgccgcgcca 166395
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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   tctcgtccaggcgccgcgcca 139
             |||||||||||||||||||||
Sbjct: 79221 tctcgtccaggcgccgcgcca 79201
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>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29
          Length = 299050

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 104    gcttgtcggcgacgatctcgtccag 128
              |||||||||||| ||||||||||||
Sbjct: 202192 gcttgtcggcgaggatctcgtccag 202216
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>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
             complete sequence
          Length = 141545

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 427   gcgctccagtagccgaggatgtggtccca 455
             |||| |||||||||||||| |||||||||
Sbjct: 71144 gcgccccagtagccgaggacgtggtccca 71116
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 411     cggcctcgccgtgctggcgct 431
               |||||||||||||||||||||
Sbjct: 2063940 cggcctcgccgtgctggcgct 2063920
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 427      gcgctccagtagccgaggatgtggtccca 455
                |||| |||||||||||||| |||||||||
Sbjct: 26294567 gcgccccagtagccgaggacgtggtccca 26294539
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                            
Query: 108      gtcggcgacgatctcgtccaggcgccgcgccatgtcgggcgtcatgtggttcacccagtc 167
                |||| ||||||||| |||||| | |  ||||||  | ||||||||||||||   ||||||
Sbjct: 21713472 gtcgtcgacgatcttgtccagcctcgccgccatcgccggcgtcatgtggttgcgccagtc 21713413

                                     
Query: 168      gccggccacgcccttcctgaa 188
                |||||| || || ||||||||
Sbjct: 21713412 gccggcgacacctttcctgaa 21713392
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 108     gtcggcgacgatctcgtccag 128
               |||||||||||||||||||||
Sbjct: 3999960 gtcggcgacgatctcgtccag 3999940
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>ref|XM_558384.1| Anopheles gambiae str. PEST ENSANGP00000026527
           (ENSANGG00000000841), partial mRNA
          Length = 3093

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 508 aacgccagctccggatgcagc 528
           |||||||||||||||||||||
Sbjct: 926 aacgccagctccggatgcagc 906
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>ref|XM_314268.2| Anopheles gambiae str. PEST ENSANGP00000000964 (ENSANGG00000000841),
            partial mRNA
          Length = 5937

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 508  aacgccagctccggatgcagc 528
            |||||||||||||||||||||
Sbjct: 1061 aacgccagctccggatgcagc 1041
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 103     agcttgtcggcgacgatctcg 123
               |||||||||||||||||||||
Sbjct: 2405809 agcttgtcggcgacgatctcg 2405829
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 166     tcgccggccacgcccttcctg 186
               |||||||||||||||||||||
Sbjct: 6058047 tcgccggccacgcccttcctg 6058027
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>gb|AE010355.1| Methanopyrus kandleri AV19 section 54 of 157 of the complete genome
          Length = 11133

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 110  cggcgacgatctcgtccagg 129
            ||||||||||||||||||||
Sbjct: 6705 cggcgacgatctcgtccagg 6724
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 94      gcggcatggagcttgtcggcgacg 117
               |||||||||||| |||||||||||
Sbjct: 1594629 gcggcatggagcctgtcggcgacg 1594606
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 496     aagacgtcggcaaacgccag 515
               ||||||||||||||||||||
Sbjct: 1747742 aagacgtcggcaaacgccag 1747761
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>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis
             gene cluster, partial sequence
          Length = 103450

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 107   tgtcggcgacgatctcgtccaggcgccgcgcc 138
             ||||||| |||| |||| ||||||||||||||
Sbjct: 56117 tgtcggccacgaactcgcccaggcgccgcgcc 56086
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 272     agagcttgacgatgtcatgg 291
               ||||||||||||||||||||
Sbjct: 3985606 agagcttgacgatgtcatgg 3985587
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>gb|AY281376.1| Hypocrea jecorina strain QM6a Axe2 (axe2) mRNA, complete cds
          Length = 900

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 278 tgacgatgtcatggacgacg 297
           ||||||||||||||||||||
Sbjct: 396 tgacgatgtcatggacgacg 415
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 113     cgacgatctcgtccaggcgccgcg 136
               |||||||||| |||||||||||||
Sbjct: 3047077 cgacgatctcttccaggcgccgcg 3047054
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    ctcgtccaggcgccgcgcca 139
              ||||||||||||||||||||
Sbjct: 898788 ctcgtccaggcgccgcgcca 898769
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    ccggcctcgccgtgctggcg 429
              ||||||||||||||||||||
Sbjct: 557416 ccggcctcgccgtgctggcg 557397
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 100     tggagcttgtcggcgacgat 119
               ||||||||||||||||||||
Sbjct: 1353175 tggagcttgtcggcgacgat 1353156
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>gb|BC083664.1| Rattus norvegicus similar to Hypothetical protein C20orf135, mRNA
            (cDNA clone MGC:94505 IMAGE:7135476), complete cds
          Length = 1925

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  gcctccaggttcttgaggtg 260
            ||||||||||||||||||||
Sbjct: 1602 gcctccaggttcttgaggtg 1583
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>ref|NM_001014052.1| Rattus norvegicus similar to Hypothetical protein C20orf135
            (RGD1309726), mRNA
          Length = 1925

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  gcctccaggttcttgaggtg 260
            ||||||||||||||||||||
Sbjct: 1602 gcctccaggttcttgaggtg 1583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,340,888
Number of Sequences: 3902068
Number of extensions: 3340888
Number of successful extensions: 61961
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60201
Number of HSP's gapped (non-prelim): 1754
length of query: 603
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 580
effective length of database: 17,143,297,704
effective search space: 9943112668320
effective search space used: 9943112668320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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