ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 226 6e-56
2gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 226 6e-56
3dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 6e-56
4dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 6e-56
5gb|BT016256.1| Zea mays clone Contig89 mRNA sequence 222 9e-55
6gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 155 2e-34
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
8dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
9dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
10gb|AY112472.1| Zea mays CL152_1 mRNA sequence 151 3e-33
11gb|BT009474.1| Triticum aestivum clone wr1.pk0030.f12:fis, full ... 147 4e-32
12dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 46 0.11
13dbj|AB055904.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 46 0.11
14gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Ca... 44 0.45
15emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 i... 44 0.45
16gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 42 1.8
17gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, com... 42 1.8
18emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on ch... 42 1.8
19gb|AC144777.3| Mus musculus BAC clone RP23-370N15 from chromosom... 42 1.8
20gb|AC127286.3| Mus musculus BAC clone RP23-340I4 from chromosome... 42 1.8
21emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence 42 1.8
22emb|BX005471.10| Mouse DNA sequence from clone RP23-18E5 on chro... 42 1.8
23emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chro... 42 1.8
24ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 ... 40 7.0
25gb|AC157087.2| Mus musculus BAC clone RP23-287O24 from chromosom... 40 7.0
26gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, al... 40 7.0
27gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, com... 40 7.0
28gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete se... 40 7.0
29gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complet... 40 7.0
30emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chr... 40 7.0
31gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence 40 7.0
32emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in... 40 7.0
33emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k... 40 7.0
34emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 s... 40 7.0
35gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, compl... 40 7.0
36ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, ... 40 7.0
37gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome ... 40 7.0
38gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12... 40 7.0
39gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, co... 40 7.0
40gb|AF115319.1|AF115319 Mus musculus Ucp2 gene, promoter sequence 40 7.0
41emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in... 40 7.0
42emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Co... 40 7.0
43gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, comple... 40 7.0
44gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 7.0
45gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cance... 40 7.0
46gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, compl... 40 7.0
47emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in ... 40 7.0
48emb|CT573422.5| Mouse DNA sequence from clone RP24-76M8 on chrom... 40 7.0
49emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ... 40 7.0
50dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.0
51dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.0
52gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, comple... 40 7.0
53gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complet... 40 7.0
54gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, co... 40 7.0
55gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, com... 40 7.0
56gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subu... 40 7.0
57gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic s... 40 7.0 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  226 bits (114), Expect = 6e-56
 Identities = 207/238 (86%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 340
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 3153 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3094

                                                                        
Query: 341  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 400
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 3093 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 3034

                                                                        
Query: 401  tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 460
            | |||||||||||||  |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 3033 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2974

                                                                      
Query: 461  tgctggattctgtctctggatcaacaagagtcacaatgagaacaggtccagtgccttg 518
            |||||| |||||||||||  ||||| || || ||||| |||| || ||||||||||||
Sbjct: 2973 tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttg 2916



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 84   ttattgagcttaggggaaaaacaatgtat 112
            ||||| || ||||||||||||||||||||
Sbjct: 3443 ttattaagtttaggggaaaaacaatgtat 3415
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>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            mRNA, complete cds
          Length = 2961

 Score =  226 bits (114), Expect = 6e-56
 Identities = 207/238 (86%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 340
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 2932 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 2873

                                                                        
Query: 341  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 400
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 2872 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 2813

                                                                        
Query: 401  tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 460
            | |||||||||||||  |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 2812 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2753

                                                                      
Query: 461  tgctggattctgtctctggatcaacaagagtcacaatgagaacaggtccagtgccttg 518
            |||||| |||||||||||  ||||| || || ||||| |||| || ||||||||||||
Sbjct: 2752 tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttg 2695
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>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
            insert sequence
          Length = 3547

 Score =  226 bits (114), Expect = 6e-56
 Identities = 207/238 (86%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 340
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 3151 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3092

                                                                        
Query: 341  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 400
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 3091 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 3032

                                                                        
Query: 401  tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 460
            | |||||||||||||  |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 3031 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2972

                                                                      
Query: 461  tgctggattctgtctctggatcaacaagagtcacaatgagaacaggtccagtgccttg 518
            |||||| |||||||||||  ||||| || || ||||| |||| || ||||||||||||
Sbjct: 2971 tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttg 2914



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 84   ttattgagcttaggggaaaaacaatgtat 112
            ||||| || ||||||||||||||||||||
Sbjct: 3441 ttattaagtttaggggaaaaacaatgtat 3413
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>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full
            insert sequence
          Length = 1551

 Score =  226 bits (114), Expect = 6e-56
 Identities = 207/238 (86%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 340
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 1169 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 1110

                                                                        
Query: 341  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 400
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 1109 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 1050

                                                                        
Query: 401  tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 460
            | |||||||||||||  |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 1049 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 990

                                                                      
Query: 461  tgctggattctgtctctggatcaacaagagtcacaatgagaacaggtccagtgccttg 518
            |||||| |||||||||||  ||||| || || ||||| |||| || ||||||||||||
Sbjct: 989  tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttg 932



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 84   ttattgagcttaggggaaaaacaatgtat 112
            ||||| || ||||||||||||||||||||
Sbjct: 1459 ttattaagtttaggggaaaaacaatgtat 1431
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>gb|BT016256.1| Zea mays clone Contig89 mRNA sequence
          Length = 1657

 Score =  222 bits (112), Expect = 9e-55
 Identities = 190/216 (87%)
 Strand = Plus / Minus

                                                                        
Query: 289  tgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagcctttccttcttc 348
            ||||| |||||||| |||||||| ||||| |||||||| |  ||||||||||||||||| 
Sbjct: 1350 tgctcgtcctcgtccgattcaacatctccgtactgccaaatccgcagcctttccttcttt 1291

                                                                        
Query: 349  gccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttgtgtcccat 408
            ||||| |||||||||||||||||||||| |||||| |||||||||||| | |||||||||
Sbjct: 1290 gccttgtcctggaactgttccaggttctggagagccgtcttcctctccctagtgtcccat 1231

                                                                        
Query: 409  ctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattgatgctggat 468
            |||||||  ||||| || ||||||||||||||||||||||||| ||| || |||||   |
Sbjct: 1230 ctcttgcttctttcgagccgggcaagcccttcctcaagcatggtagcgtttatgctactt 1171

                                                
Query: 469  tctgtctctggatcaacaagagtcacaatgagaaca 504
            |||||||| | |||||||||||| ||||||||||||
Sbjct: 1170 tctgtctccgcatcaacaagagtaacaatgagaaca 1135
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>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            gene, complete cds
          Length = 5478

 Score =  155 bits (78), Expect = 2e-34
 Identities = 141/162 (87%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 340
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 5271 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 5212

                                                                        
Query: 341  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 400
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 5211 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 5152

                                                      
Query: 401  tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 442
            | |||||||||||||  |||||||| || |||||||||||||
Sbjct: 5151 tatcccatctcttgcttctttcaagccgagcaagcccttcct 5110



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                        
Query: 440  cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 499
            |||||||||||| |||||||||||||| |||||||||||  ||||| || || ||||| |
Sbjct: 4915 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 4856

                               
Query: 500  gaacaggtccagtgccttg 518
            ||| || ||||||||||||
Sbjct: 4855 gaatagttccagtgccttg 4837
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  155 bits (78), Expect = 2e-34
 Identities = 141/162 (87%)
 Strand = Plus / Plus

                                                                            
Query: 281      ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 340
                |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 19118661 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 19118720

                                                                            
Query: 341      ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 400
                ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 19118721 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 19118780

                                                          
Query: 401      tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 442
                | |||||||||||||  |||||||| || |||||||||||||
Sbjct: 19118781 tatcccatctcttgcttctttcaagccgagcaagcccttcct 19118822



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                            
Query: 440      cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 499
                |||||||||||| |||||||||||||| |||||||||||  ||||| || || ||||| |
Sbjct: 19119017 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 19119076

                                   
Query: 500      gaacaggtccagtgccttg 518
                ||| || ||||||||||||
Sbjct: 19119077 gaatagttccagtgccttg 19119095



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 84       ttattgagcttaggggaaaaacaatgtat 112
                ||||| || ||||||||||||||||||||
Sbjct: 19118371 ttattaagtttaggggaaaaacaatgtat 19118399
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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  155 bits (78), Expect = 2e-34
 Identities = 141/162 (87%)
 Strand = Plus / Plus

                                                                         
Query: 281   ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 340
             |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 16910 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 16969

                                                                         
Query: 341   ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 400
             ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 16970 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 17029

                                                       
Query: 401   tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 442
             | |||||||||||||  |||||||| || |||||||||||||
Sbjct: 17030 tatcccatctcttgcttctttcaagccgagcaagcccttcct 17071



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                         
Query: 440   cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 499
             |||||||||||| |||||||||||||| |||||||||||  ||||| || || ||||| |
Sbjct: 17266 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 17325

                                
Query: 500   gaacaggtccagtgccttg 518
             ||| || ||||||||||||
Sbjct: 17326 gaatagttccagtgccttg 17344



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 84    ttattgagcttaggggaaaaacaatgtat 112
             ||||| || ||||||||||||||||||||
Sbjct: 16620 ttattaagtttaggggaaaaacaatgtat 16648
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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  155 bits (78), Expect = 2e-34
 Identities = 141/162 (87%)
 Strand = Plus / Plus

                                                                          
Query: 281    ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 340
              |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 124182 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 124241

                                                                          
Query: 341    ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 400
              ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 124242 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 124301

                                                        
Query: 401    tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 442
              | |||||||||||||  |||||||| || |||||||||||||
Sbjct: 124302 tatcccatctcttgcttctttcaagccgagcaagcccttcct 124343



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                          
Query: 440    cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 499
              |||||||||||| |||||||||||||| |||||||||||  ||||| || || ||||| |
Sbjct: 124538 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 124597

                                 
Query: 500    gaacaggtccagtgccttg 518
              ||| || ||||||||||||
Sbjct: 124598 gaatagttccagtgccttg 124616



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 84     ttattgagcttaggggaaaaacaatgtat 112
              ||||| || ||||||||||||||||||||
Sbjct: 123892 ttattaagtttaggggaaaaacaatgtat 123920
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>gb|AY112472.1| Zea mays CL152_1 mRNA sequence
          Length = 1436

 Score =  151 bits (76), Expect = 3e-33
 Identities = 127/144 (88%)
 Strand = Plus / Minus

                                                                       
Query: 361 aactgttccaggttctcgagagctgtcttcctctcctttgtgtcccatctcttgcccctt 420
           |||||||||||||||| |||||| |||||||||||| | ||||||||||||||||  |||
Sbjct: 976 aactgttccaggttctggagagccgtcttcctctccctagtgtcccatctcttgcttctt 917

                                                                       
Query: 421 tcaagtcgggcaagcccttcctcaagcatggcagcattgatgctggattctgtctctgga 480
           || || ||||||||||||||||||||||||| ||| || |||||   ||||||||| | |
Sbjct: 916 tcgagccgggcaagcccttcctcaagcatggtagcgtttatgctactttctgtctccgca 857

                                   
Query: 481 tcaacaagagtcacaatgagaaca 504
           ||||||||||| ||||||||||||
Sbjct: 856 tcaacaagagtaacaatgagaaca 833
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>gb|BT009474.1| Triticum aestivum clone wr1.pk0030.f12:fis, full insert mRNA sequence
          Length = 1394

 Score =  147 bits (74), Expect = 4e-32
 Identities = 74/74 (100%)
 Strand = Plus / Minus

                                                                        
Query: 445  agcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatgagaaca 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 agcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatgagaaca 1330

                          
Query: 505  ggtccagtgccttg 518
            ||||||||||||||
Sbjct: 1329 ggtccagtgccttg 1316
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>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
            complete cds
          Length = 3379

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 430  gcaagcccttcctcaagcatggcagcattga 460
            ||||| ||||||| |||||||||||||||||
Sbjct: 2986 gcaagtccttcctgaagcatggcagcattga 2956
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>dbj|AB055904.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
            partial cds
          Length = 2343

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 430  gcaagcccttcctcaagcatggcagcattga 460
            ||||| ||||||| |||||||||||||||||
Sbjct: 1922 gcaagtccttcctgaagcatggcagcattga 1892
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>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 117636

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 101   aaaacaatgtatatagttctct 122
             ||||||||||||||||||||||
Sbjct: 97578 aaaacaatgtatatagttctct 97599
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>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13,
              complete sequence
          Length = 165993

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 165    ttcatataagctctcgactgagtttc 190
              |||||||| |||||||||||||||||
Sbjct: 151331 ttcatatatgctctcgactgagtttc 151306
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>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     ttattgagcttaggggaaaaa 104
              |||||||||||||||||||||
Sbjct: 246866 ttattgagcttaggggaaaaa 246886
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>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence
          Length = 257203

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    ttattgagcttaggggaaaaa 104
             |||||||||||||||||||||
Sbjct: 88447 ttattgagcttaggggaaaaa 88467
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>emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on chromosome 6 Contains one or
              two novel genes, a repressor of protein-kinase
              (interferon-inducible double stranded RNA dependent
              inhibitor) (P58 repressor) (PRKRIR) pseudogene and a CpG
              island, complete sequence
          Length = 127862

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 463    ctggattctgtctctggatca 483
              |||||||||||||||||||||
Sbjct: 103799 ctggattctgtctctggatca 103819
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>gb|AC144777.3| Mus musculus BAC clone RP23-370N15 from chromosome unknown, complete
             sequence
          Length = 201349

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 471   tgtctctggatcaacaagagtcaca 495
             |||||||||||||| ||||||||||
Sbjct: 27654 tgtctctggatcaaaaagagtcaca 27630
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>gb|AC127286.3| Mus musculus BAC clone RP23-340I4 from chromosome unknown, complete
             sequence
          Length = 190953

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 471   tgtctctggatcaacaagagtcaca 495
             |||||||||||||| ||||||||||
Sbjct: 13965 tgtctctggatcaaaaagagtcaca 13989
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>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence
          Length = 168910

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 152    ttcttactaagttttcatata 172
              |||||||||||||||||||||
Sbjct: 141218 ttcttactaagttttcatata 141198
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>emb|BX005471.10| Mouse DNA sequence from clone RP23-18E5 on chromosome X, complete
             sequence
          Length = 141331

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 471   tgtctctggatcaacaagagtcaca 495
             |||||||||||||| ||||||||||
Sbjct: 51152 tgtctctggatcaaaaagagtcaca 51128
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>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete
              sequence
          Length = 195413

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 64     gtccacaaaggacacagacct 84
              |||||||||||||||||||||
Sbjct: 152418 gtccacaaaggacacagacct 152438
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>ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 mRNA, complete cds
          Length = 3295

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 292 tcttcctcgtcggattcaacgtctccat 319
           ||||| ||||||| ||||||||||||||
Sbjct: 755 tcttcttcgtcggcttcaacgtctccat 728
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>gb|AC157087.2| Mus musculus BAC clone RP23-287O24 from chromosome 9, complete sequence
          Length = 226149

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    ccatctcttgcccctttcaa 424
              ||||||||||||||||||||
Sbjct: 223814 ccatctcttgcccctttcaa 223833
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>gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide,
           mRNA (cDNA clone MGC:72546 IMAGE:5598014), complete cds
          Length = 3700

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctttccttcttcgccttct 355
           ||||||||||||||||||||
Sbjct: 338 cctttccttcttcgccttct 319
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>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence
          Length = 157629

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   cagcattgatgctggattct 471
             ||||||||||||||||||||
Sbjct: 92820 cagcattgatgctggattct 92801
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>gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete sequence
          Length = 51685

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    gaaaaacaatgtatatagttctct 122
             |||||||||| |||||||||||||
Sbjct: 28326 gaaaaacaatatatatagttctct 28303
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>gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complete sequence
          Length = 192092

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   atatagttctcttcttctaatggc 134
             |||| |||||||||||||||||||
Sbjct: 99542 atatggttctcttcttctaatggc 99565
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>emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chromosome Xq13.2-21.2
             Contains the 5' end of a novel gene, complete sequence
          Length = 94056

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   ctctcctttgtgtcccatct 410
             ||||||||||||||||||||
Sbjct: 81672 ctctcctttgtgtcccatct 81691
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>gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence
          Length = 1920

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 292 tcttcctcgtcggattcaacgtctccat 319
           ||||| ||||||| ||||||||||||||
Sbjct: 746 tcttcttcgtcggcttcaacgtctccat 719
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>emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in linkage group 5, complete
              sequence
          Length = 185915

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    ataaatatagtctctctttc 154
              ||||||||||||||||||||
Sbjct: 181778 ataaatatagtctctctttc 181797
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>emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE
          Length = 123977

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 345   cttcgccttctcctggaactgttccaggttct 376
             |||| |||||||||||||||  ||||||||||
Sbjct: 51074 cttcaccttctcctggaactcctccaggttct 51105
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>emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 subunit exon 2
          Length = 1813

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  cctttccttcttcgccttct 355
            ||||||||||||||||||||
Sbjct: 1771 cctttccttcttcgccttct 1752
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>gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, complete sequence
          Length = 125123

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   tgtatatagttctcttcttc 127
             ||||||||||||||||||||
Sbjct: 87138 tgtatatagttctcttcttc 87157
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>ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide
           (Atp1a1), mRNA
          Length = 3636

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctttccttcttcgccttct 355
           ||||||||||||||||||||
Sbjct: 327 cctttccttcttcgccttct 308
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>gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome 6 clone RP31-263K14,
             complete sequence
          Length = 151836

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aaaacaatgtatatagttct 120
             ||||||||||||||||||||
Sbjct: 34730 aaaacaatgtatatagttct 34711
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>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
             sequence
          Length = 107200

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 292   tcttcctcgtcggattcaacgtctccat 319
             ||||| ||||||| ||||||||||||||
Sbjct: 12990 tcttcttcgtcggcttcaacgtctccat 13017
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>gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, complete sequence
          Length = 195979

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   tgctggattctgtctctgga 480
             ||||||||||||||||||||
Sbjct: 69007 tgctggattctgtctctgga 69026
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>gb|AF115319.1|AF115319 Mus musculus Ucp2 gene, promoter sequence
          Length = 7342

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 111  atatagttctcttcttctaatggc 134
            |||| |||||||||||||||||||
Sbjct: 3933 atatggttctcttcttctaatggc 3910
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>emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in linkage group 5,
             complete sequence
          Length = 160041

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   ataaatatagtctctctttc 154
             ||||||||||||||||||||
Sbjct: 88307 ataaatatagtctctctttc 88326
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>emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS70ZB10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2808

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 292 tcttcctcgtcggattcaacgtctccat 319
           ||||| ||||||| ||||||||||||||
Sbjct: 687 tcttcttcgtcggcttcaacgtctccat 660
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>gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, complete sequence
          Length = 111857

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   tcttctaatggcataaatat 142
             ||||||||||||||||||||
Sbjct: 84384 tcttctaatggcataaatat 84403
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>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   ccaaaactttcatatctaaa 219
             ||||||||||||||||||||
Sbjct: 29599 ccaaaactttcatatctaaa 29580
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>gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 185470

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   gtgtccaaaactttcatatc 215
             ||||||||||||||||||||
Sbjct: 41312 gtgtccaaaactttcatatc 41293
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>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence
          Length = 195874

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 452    cagcattgatgctggattct 471
              ||||||||||||||||||||
Sbjct: 137517 cagcattgatgctggattct 137536
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>emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in linkage group 22,
             complete sequence
          Length = 180599

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   gagctgtcttcctctccttt 399
             ||||||||||||||||||||
Sbjct: 92306 gagctgtcttcctctccttt 92287
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>emb|CT573422.5| Mouse DNA sequence from clone RP24-76M8 on chromosome 9, complete
              sequence
          Length = 193236

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    ccatctcttgcccctttcaa 424
              ||||||||||||||||||||
Sbjct: 168125 ccatctcttgcccctttcaa 168144
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>emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ATPase alpha-1 chain
           precursor (atp1a1 gene)
          Length = 3407

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctttccttcttcgccttct 355
           ||||||||||||||||||||
Sbjct: 104 cctttccttcttcgccttct 85
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>dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-99C10, complete
              sequences
          Length = 175110

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    aaactttcatatctaaacca 222
              ||||||||||||||||||||
Sbjct: 139050 aaactttcatatctaaacca 139031
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>dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-752D5, complete
             sequences
          Length = 170973

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   aaactttcatatctaaacca 222
             ||||||||||||||||||||
Sbjct: 31136 aaactttcatatctaaacca 31117
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>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence
          Length = 182415

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   tttccttcttcgccttctcc 357
             ||||||||||||||||||||
Sbjct: 98222 tttccttcttcgccttctcc 98203
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>gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complete sequence
          Length = 232568

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   atatagttctcttcttctaatggc 134
             |||| |||||||||||||||||||
Sbjct: 42584 atatggttctcttcttctaatggc 42607
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>gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, complete sequence
          Length = 194167

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   atatagttctcttcttctaatggc 134
             |||| |||||||||||||||||||
Sbjct: 78320 atatggttctcttcttctaatggc 78343
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>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence
          Length = 226189

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    cagcattgatgctggattct 471
              ||||||||||||||||||||
Sbjct: 148645 cagcattgatgctggattct 148626
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>gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subunit mRNA, complete cds
          Length = 3599

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctttccttcttcgccttct 355
           ||||||||||||||||||||
Sbjct: 350 cctttccttcttcgccttct 331
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>gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic subunit mRNA, complete
           cds
          Length = 3636

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctttccttcttcgccttct 355
           ||||||||||||||||||||
Sbjct: 327 cctttccttcttcgccttct 308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,517,289
Number of Sequences: 3902068
Number of extensions: 5517289
Number of successful extensions: 103645
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103475
Number of HSP's gapped (non-prelim): 170
length of query: 521
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 498
effective length of database: 17,143,297,704
effective search space: 8537362256592
effective search space used: 8537362256592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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