ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19d04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475752.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1173 Score = 347 bits (175), Expect = 3e-92 Identities = 305/347 (87%), Gaps = 6/347 (1%) Strand = Plus / Minus Query: 271 ctgaagcctccacgatccccgcggcccctgccgccacggcctcggccaccatagaacctt 330 ||||| || ||||||||||||||||||||||| ||| || ||||| |||||| |||| Sbjct: 1082 ctgaaaccgccacgatccccgcggcccctgcc---acgaccacggccgccatagtacctc 1026 Query: 331 tctccttcagcaggcttcaggaactcgttgatgctcacagacttcttagcacgctcttca 390 ||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1025 tctccttcagctggttttaggaactcgttgatgctcacagacttcttagcacgctcatca 966 Query: 391 cgttcagcattctctttcttcttcaaagcctccttatcagcacccagtttgatgaaaacc 450 ||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||||| Sbjct: 965 cgttcagcattttctttcttcttcaaagcatccttgtcagatcccagtttgatgaaaact 906 Query: 451 tcatcatttcctttcttggtggaaagtagttgcatagcctgaagatccttatcaatttcg 510 ||||||||| ||||||| |||||||| ||||||||| || | |||||| |||||||| Sbjct: 905 tcatcattttctttcttattggaaagtggttgcatagacttcaaatccttgtcaatttca 846 Query: 511 accttcctctcttcagacttcttcaaagcatcaagtgctttcctcttctcctccattact 570 |||||||||||||||| ||||||||| | |||||||||||||||||||||| ||| | Sbjct: 845 accttcctctcttcag---tcttcaaagaaagaagtgctttcctcttctcctcccttaat 789 Query: 571 ttctcaaattcatcaagagtcatctcattatcctcttccttttcttc 617 |||||||| || ||||||||||| || |||||||||||||||||||| Sbjct: 788 ttctcaaactcctcaagagtcatttccttatcctcttccttttcttc 742
>dbj|AK067806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119G19, full insert sequence Length = 1091 Score = 339 bits (171), Expect = 7e-90 Identities = 304/347 (87%), Gaps = 6/347 (1%) Strand = Plus / Minus Query: 271 ctgaagcctccacgatccccgcggcccctgccgccacggcctcggccaccatagaacctt 330 ||||| || ||||||||||||||||||||||| ||| || ||||| |||||| |||| Sbjct: 773 ctgaaaccgccacgatccccgcggcccctgcc---acgaccacggccgccatagtacctc 717 Query: 331 tctccttcagcaggcttcaggaactcgttgatgctcacagacttcttagcacgctcttca 390 ||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 716 tctccttcagctggttttaggaactcgttgatgctcacagacttcttagcacgctcatca 657 Query: 391 cgttcagcattctctttcttcttcaaagcctccttatcagcacccagtttgatgaaaacc 450 ||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||||| Sbjct: 656 cgttcagcattttctttcttcttcaaagcatccttgtcagatcccagtttgatgaaaact 597 Query: 451 tcatcatttcctttcttggtggaaagtagttgcatagcctgaagatccttatcaatttcg 510 ||||||||| ||||||| |||||||| ||||||||| || | ||| || |||||||| Sbjct: 596 tcatcattttctttcttattggaaagtggttgcatagacttcaaatctttgtcaatttca 537 Query: 511 accttcctctcttcagacttcttcaaagcatcaagtgctttcctcttctcctccattact 570 |||||||||||||||| ||||||||| | |||||||||||||||||||||| ||| | Sbjct: 536 accttcctctcttcag---tcttcaaagaaagaagtgctttcctcttctcctcccttaat 480 Query: 571 ttctcaaattcatcaagagtcatctcattatcctcttccttttcttc 617 |||||||| || ||||||||||| || |||||||||||||||||||| Sbjct: 479 ttctcaaactcctcaagagtcatttccttatcctcttccttttcttc 433
>ref|NM_191814.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1143 Score = 228 bits (115), Expect = 2e-56 Identities = 278/332 (83%), Gaps = 9/332 (2%) Strand = Plus / Minus Query: 304 ccacggcctcggccaccatagaacctttctccttcagcaggcttcaggaactcgttgatg 363 ||||| || ||||| |||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct: 1013 ccacgaccacggccgccatagtacctttctccttccgcaggcttcaggaactcattgatg 954 Query: 364 ctcacagacttcttagcacgctcttcacgttcagcattctctttcttcttcaaagcctcc 423 |||||||||||||| |||||||| || || |||||||| || |||||||| ||| Sbjct: 953 ctcacagacttcttggcacgctcatcgcgctcagcattttccttcttctta------tcc 900 Query: 424 ttatcagcacccagtttgatgaaaacctcatcatttcctttcttggtggaaagtagttgc 483 || |||| |||||| || ||||||| |||||||||||||||||||| |||||| | ||| Sbjct: 899 ttgtcagaacccagcttaatgaaaatttcatcatttcctttcttggtagaaagtggctgc 840 Query: 484 atagcctgaagatccttatcaatttcgaccttcctctcttcagacttcttcaaagcatca 543 |||| ||| || |||||||| | || |||||||||||||||| ||| |||||| | Sbjct: 839 atagactgcaggtccttatcgacctcaaccttcctctcttcagccttg---aaagcaaga 783 Query: 544 agtgctttcctcttctcctccattactttctcaaattcatcaagagtcatctcattatcc 603 || ||||||| ||| |||||| ||| ||||||||| || |||||||||||||| |||||| Sbjct: 782 agagctttccgcttttcctcccttaatttctcaaactcctcaagagtcatctccttatcc 723 Query: 604 tcttccttttcttcttccacaactgcagcacc 635 |||||||| ||||||||| || ||||||||| Sbjct: 722 tcttccttctcttcttcctcatttgcagcacc 691 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 cttcccaccgagggttgggaactg 206 ||||||||| |||||||||||||| Sbjct: 1131 cttcccaccaagggttgggaactg 1108
>gb|BT016648.1| Zea mays clone Contig481 mRNA sequence Length = 1556 Score = 222 bits (112), Expect = 1e-54 Identities = 295/355 (83%), Gaps = 12/355 (3%) Strand = Plus / Minus Query: 263 atccgcctctgaagcctccacgatccccgcggcccctgccgccacggcctcggccaccat 322 |||||||||| || || ||||||||||| |||||||| || |||||| ||||| || | Sbjct: 1236 atccgcctctaaaaccaccacgatccccacggccccttcc---acggccacggccgccgt 1180 Query: 323 agaacctttctccttcagcaggcttcaggaactcgttgatgctcacagacttcttagcac 382 || ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| Sbjct: 1179 agtacctttctccttcagcaggtttcaggaactcgttgatgctcaccgacttcttggcac 1120 Query: 383 gctcttcacgttcagcattctctttcttcttcaaagcctccttatcagcacccagtttga 442 |||| ||||| |||||||| || |||||||| ||||| |||| |||||| || | Sbjct: 1119 gctcatcacgctcagcattttccttcttctt------atccttgtcagaacccagcttaa 1066 Query: 443 tgaaaacctcatcatttcctttcttggtggaaagtagttgcatagcctgaagatccttat 502 ||||||| ||||||||| |||||||| | |||||| | |||| || ||| | |||||| | Sbjct: 1065 tgaaaacttcatcattttctttcttgtttgaaagtggctgcagagactgcaaatccttgt 1006 Query: 503 caatttcgaccttcctctcttcagacttcttcaaagcatcaagtgctttcctcttctcct 562 ||| ||| || |||||||| |||| |||||| ||| ||||||||||||||||||| Sbjct: 1005 caacttcaactttcctctcctcag---ccttcaatgcaagtagtgctttcctcttctcct 949 Query: 563 ccattactttctcaaattcatcaagagtcatctcattatcctcttccttttcttc 617 | ||| |||||||||||| || ||||||||||| || ||||||||||||||||| Sbjct: 948 ctcttattttctcaaattcctccagagtcatctccttgtcctcttccttttcttc 894
>gb|AY103606.1| Zea mays PCO150737 mRNA sequence Length = 1811 Score = 222 bits (112), Expect = 1e-54 Identities = 295/355 (83%), Gaps = 12/355 (3%) Strand = Plus / Minus Query: 263 atccgcctctgaagcctccacgatccccgcggcccctgccgccacggcctcggccaccat 322 |||||||||| || || ||||||||||| |||||||| || |||||| ||||| || | Sbjct: 1473 atccgcctctaaaaccaccacgatccccacggccccttcc---acggccacggccgccgt 1417 Query: 323 agaacctttctccttcagcaggcttcaggaactcgttgatgctcacagacttcttagcac 382 || ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| Sbjct: 1416 agtacctttctccttcagcaggtttcaggaactcgttgatgctcaccgacttcttggcac 1357 Query: 383 gctcttcacgttcagcattctctttcttcttcaaagcctccttatcagcacccagtttga 442 |||| ||||| |||||||| || |||||||| ||||| |||| |||||| || | Sbjct: 1356 gctcatcacgctcagcattttccttcttctt------atccttgtcagaacccagcttaa 1303 Query: 443 tgaaaacctcatcatttcctttcttggtggaaagtagttgcatagcctgaagatccttat 502 ||||||| ||||||||| |||||||| | |||||| | |||| || ||| | |||||| | Sbjct: 1302 tgaaaacttcatcattttctttcttgtttgaaagtggctgcagagactgcaaatccttgt 1243 Query: 503 caatttcgaccttcctctcttcagacttcttcaaagcatcaagtgctttcctcttctcct 562 ||| ||| || |||||||| |||| |||||| ||| ||||||||||||||||||| Sbjct: 1242 caacttcaactttcctctcctcag---ccttcaatgcaagtagtgctttcctcttctcct 1186 Query: 563 ccattactttctcaaattcatcaagagtcatctcattatcctcttccttttcttc 617 | ||| |||||||||||| || ||||||||||| || ||||||||||||||||| Sbjct: 1185 ctcttattttctcaaattcctccagagtcatctccttgtcctcttccttttcttc 1131
>dbj|AK121001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044L15, full insert sequence Length = 1611 Score = 220 bits (111), Expect = 4e-54 Identities = 277/332 (83%), Gaps = 9/332 (2%) Strand = Plus / Minus Query: 304 ccacggcctcggccaccatagaacctttctccttcagcaggcttcaggaactcgttgatg 363 ||||| || ||||| |||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct: 1249 ccacgaccacggccgccatagtacctttctccttccgcaggcttcaggaactcattgatg 1190 Query: 364 ctcacagacttcttagcacgctcttcacgttcagcattctctttcttcttcaaagcctcc 423 |||||||||||||| |||||||| || || |||||||| || ||||||| ||| Sbjct: 1189 ctcacagacttcttggcacgctcatcgcgctcagcattttccctcttctta------tcc 1136 Query: 424 ttatcagcacccagtttgatgaaaacctcatcatttcctttcttggtggaaagtagttgc 483 || |||| |||||| || ||||||| |||||||||||||||||||| |||||| | ||| Sbjct: 1135 ttgtcagaacccagcttaatgaaaatttcatcatttcctttcttggtagaaagtggctgc 1076 Query: 484 atagcctgaagatccttatcaatttcgaccttcctctcttcagacttcttcaaagcatca 543 |||| ||| || |||||||| | || |||||||||||||||| ||| |||||| | Sbjct: 1075 atagactgcaggtccttatcgacctcaaccttcctctcttcagccttg---aaagcaaga 1019 Query: 544 agtgctttcctcttctcctccattactttctcaaattcatcaagagtcatctcattatcc 603 || ||||||| ||| |||||| ||| ||||||||| || |||||||||||||| |||||| Sbjct: 1018 agagctttccgcttttcctcccttaatttctcaaactcctcaagagtcatctccttatcc 959 Query: 604 tcttccttttcttcttccacaactgcagcacc 635 |||||||| ||||||||| || ||||||||| Sbjct: 958 tcttccttctcttcttcctcatttgcagcacc 927 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 cttcccaccgagggttgggaactg 206 ||||||||| |||||||||||||| Sbjct: 1367 cttcccaccaagggttgggaactg 1344
>gb|AF113521.1|AF113521 Zea mays putative transcription factor mRNA sequence Length = 1212 Score = 208 bits (105), Expect = 2e-50 Identities = 295/356 (82%), Gaps = 13/356 (3%) Strand = Plus / Minus Query: 263 atccgcctctgaagcctccacgatccccgcggcccctgccgccacggcctcggccaccat 322 |||||||||| || || ||||||||||| |||||||| || |||||| ||||| || | Sbjct: 943 atccgcctctaaaaccaccacgatccccacggccccttcc---acggccacggccgccgt 887 Query: 323 agaacctttctccttcagcaggcttcaggaactcgttgatgctcacagacttcttagcac 382 || ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| Sbjct: 886 agtacctttctccttcagcaggtttcaggaactcgttgatgctcaccgacttcttggcac 827 Query: 383 gctcttcacgttc-agcattctctttcttcttcaaagcctccttatcagcacccagtttg 441 |||| ||||| || |||||| || |||||||| ||||| |||| |||||| || Sbjct: 826 gctcatcacgctcaagcattttccttcttctt------atccttgtcagaacccagctta 773 Query: 442 atgaaaacctcatcatttcctttcttggtggaaagtagttgcatagcctgaagatcctta 501 |||||||| ||||||||| |||||||| | |||||| | |||| || ||| | |||||| Sbjct: 772 atgaaaacttcatcattttctttcttgtttgaaagtggctgcagagactgcaaatccttg 713 Query: 502 tcaatttcgaccttcctctcttcagacttcttcaaagcatcaagtgctttcctcttctcc 561 |||| ||| || |||||||| |||| |||||| ||| |||||||||||||||||| Sbjct: 712 tcaacttcaactttcctctcctcag---ccttcaatgcaagtagtgctttcctcttctcc 656 Query: 562 tccattactttctcaaattcatcaagagtcatctcattatcctcttccttttcttc 617 || ||| |||||||||||| || ||||||||||| || ||||||||||||||||| Sbjct: 655 tctcttattttctcaaattcctccagagtcatctccttgtcctcttccttttcttc 600
>gb|BT019307.1| Zea mays clone Contig980.F mRNA sequence Length = 869 Score = 206 bits (104), Expect = 7e-50 Identities = 293/355 (82%), Gaps = 12/355 (3%) Strand = Plus / Minus Query: 263 atccgcctctgaagcctccacgatccccgcggcccctgccgccacggcctcggccaccat 322 |||||||||| || || ||||||||||| |||||||| || |||||| ||||| || | Sbjct: 572 atccgcctctaaaaccaccacgatccccacggccccttcc---acggccacggccgccgt 516 Query: 323 agaacctttctccttcagcaggcttcaggaactcgttgatgctcacagacttcttagcac 382 || ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| Sbjct: 515 agtacctttctccttcagcaggtttcaggaactcgttgatgctcaccgacttcttggcac 456 Query: 383 gctcttcacgttcagcattctctttcttcttcaaagcctccttatcagcacccagtttga 442 |||| ||||| |||||||| || |||||||| ||||| |||| |||||| || | Sbjct: 455 gctcatcacgctcagcattttccttcttctt------atccttgtcagaacccagcttaa 402 Query: 443 tgaaaacctcatcatttcctttcttggtggaaagtagttgcatagcctgaagatccttat 502 ||||||| ||||||||| |||||||| | |||||| | |||| || | |||||||| | Sbjct: 401 tgaaaacttcatcattttctttcttgtttgaaagtggctgcagagaacgcagatccttgt 342 Query: 503 caatttcgaccttcctctcttcagacttcttcaaagcatcaagtgctttcctcttctcct 562 ||| ||| || |||||||| |||| |||||| ||| ||||||||||||||||||| Sbjct: 341 caacttcaactttcctctcctcag---ccttcaacgcaagtagtgctttcctcttctcct 285 Query: 563 ccattactttctcaaattcatcaagagtcatctcattatcctcttccttttcttc 617 | ||| |||||||||||| || |||| |||||| || ||||||||||||||||| Sbjct: 284 ctcttattttctcaaattcctccagaggcatctccttgtcctcttccttttcttc 230
>dbj|AK059581.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-B03, full insert sequence Length = 501 Score = 167 bits (84), Expect = 6e-38 Identities = 188/223 (84%), Gaps = 6/223 (2%) Strand = Plus / Minus Query: 304 ccacggcctcggccaccatagaacctttctccttcagcaggcttcaggaactcgttgatg 363 ||||| || ||||| |||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct: 229 ccacgaccacggccgccatagtacctttctccttccgcaggcttcaggaactcattgatg 170 Query: 364 ctcacagacttcttagcacgctcttcacgttcagcattctctttcttcttcaaagcctcc 423 |||||||||||||| |||||||| || || |||||||| || |||||||| ||| Sbjct: 169 ctcacagacttcttggcacgctcatcgcgctcagcattttccttcttctt------atcc 116 Query: 424 ttatcagcacccagtttgatgaaaacctcatcatttcctttcttggtggaaagtagttgc 483 || |||| |||||| || ||||||| |||||||||||||||||||| |||||| | ||| Sbjct: 115 ttgtcagaacccagcttaatgaaaatttcatcatttcctttcttggtagaaagtggctgc 56 Query: 484 atagcctgaagatccttatcaatttcgaccttcctctcttcag 526 |||| ||| || |||||||| | || |||||||||||||||| Sbjct: 55 atagactgcaggtccttatcgacctcaaccttcctctcttcag 13 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 cttcccaccgagggttgggaactg 206 ||||||||| |||||||||||||| Sbjct: 347 cttcccaccaagggttgggaactg 324
>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05, complete sequence Length = 196284 Score = 147 bits (74), Expect = 5e-32 Identities = 139/160 (86%), Gaps = 3/160 (1%) Strand = Plus / Minus Query: 434 ccagtttgatgaaaacctcatcatttcctttcttggtggaaagtagttgcatagcctgaa 493 |||||||||||||||| ||||||||| ||||||| |||||||| ||||||||| || | Sbjct: 110563 ccagtttgatgaaaacttcatcattttctttcttattggaaagtggttgcatagacttca 110504 Query: 494 gatccttatcaatttcgaccttcctctcttcagacttcttcaaagcatcaagtgctttcc 553 |||||| |||||||| |||||||||||||||| ||||||||| | ||||||||||| Sbjct: 110503 aatccttgtcaatttcaaccttcctctcttcag---tcttcaaagaaagaagtgctttcc 110447 Query: 554 tcttctcctccattactttctcaaattcatcaagagtcat 593 ||||||||||| ||| ||||||||| || ||||||||||| Sbjct: 110446 tcttctcctcccttaatttctcaaactcctcaagagtcat 110407 Score = 97.6 bits (49), Expect = 4e-17 Identities = 90/103 (87%), Gaps = 3/103 (2%) Strand = Plus / Minus Query: 271 ctgaagcctccacgatccccgcggcccctgccgccacggcctcggccaccatagaacctt 330 ||||| || ||||||||||||||||||||||| ||| || ||||| |||||| |||| Sbjct: 111137 ctgaaaccgccacgatccccgcggcccctgcc---acgaccacggccgccatagtacctc 111081 Query: 331 tctccttcagcaggcttcaggaactcgttgatgctcacagact 373 ||||||||||| || || ||||||||||||||||||||||||| Sbjct: 111080 tctccttcagctggttttaggaactcgttgatgctcacagact 111038 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 372 cttcttagcacgctcttcacgttcagcattctctttcttcttcaaagcctccttatcag 430 ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||| Sbjct: 110709 cttcttagcacgctcatcacgttcagcattttctttcttcttcaaagcatccttgtcag 110651 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttc 617 |||||||||||||||||||| Sbjct: 109703 ttatcctcttccttttcttc 109684
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 147 bits (74), Expect = 5e-32 Identities = 139/160 (86%), Gaps = 3/160 (1%) Strand = Plus / Minus Query: 434 ccagtttgatgaaaacctcatcatttcctttcttggtggaaagtagttgcatagcctgaa 493 |||||||||||||||| ||||||||| ||||||| |||||||| ||||||||| || | Sbjct: 26259515 ccagtttgatgaaaacttcatcattttctttcttattggaaagtggttgcatagacttca 26259456 Query: 494 gatccttatcaatttcgaccttcctctcttcagacttcttcaaagcatcaagtgctttcc 553 |||||| |||||||| |||||||||||||||| ||||||||| | ||||||||||| Sbjct: 26259455 aatccttgtcaatttcaaccttcctctcttcag---tcttcaaagaaagaagtgctttcc 26259399 Query: 554 tcttctcctccattactttctcaaattcatcaagagtcat 593 ||||||||||| ||| ||||||||| || ||||||||||| Sbjct: 26259398 tcttctcctcccttaatttctcaaactcctcaagagtcat 26259359 Score = 97.6 bits (49), Expect = 4e-17 Identities = 90/103 (87%), Gaps = 3/103 (2%) Strand = Plus / Minus Query: 271 ctgaagcctccacgatccccgcggcccctgccgccacggcctcggccaccatagaacctt 330 ||||| || ||||||||||||||||||||||| ||| || ||||| |||||| |||| Sbjct: 26260089 ctgaaaccgccacgatccccgcggcccctgcc---acgaccacggccgccatagtacctc 26260033 Query: 331 tctccttcagcaggcttcaggaactcgttgatgctcacagact 373 ||||||||||| || || ||||||||||||||||||||||||| Sbjct: 26260032 tctccttcagctggttttaggaactcgttgatgctcacagact 26259990 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 372 cttcttagcacgctcttcacgttcagcattctctttcttcttcaaagcctccttatcag 430 ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||| Sbjct: 26259661 cttcttagcacgctcatcacgttcagcattttctttcttcttcaaagcatccttgtcag 26259603 Score = 44.1 bits (22), Expect = 0.56 Identities = 37/42 (88%) Strand = Plus / Minus Query: 326 acctttctccttcagcaggcttcaggaactcgttgatgctca 367 |||| ||||||||||| ||||||| ||| || |||||||||| Sbjct: 29138394 acctctctccttcagccggcttcaagaattcattgatgctca 29138353 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Minus Query: 547 gctttcctcttctcctccattactttctcaaattcatcaagagtcatctc 596 ||||||| ||||||||||| ||||||||| |||| || | ||||||||| Sbjct: 29137993 gctttccgcttctcctccagcactttctcatattcctccaaagtcatctc 29137944 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttc 617 |||||||||||||||||||| Sbjct: 26258655 ttatcctcttccttttcttc 26258636
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 97.6 bits (49), Expect = 4e-17 Identities = 129/155 (83%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 442 atgaaaacctcatcatttcctttcttggtggaaagtagttgcatagcctgaagatcctta 501 ||||||| |||||||||||||||||||| |||||| | ||||||| ||| || |||||| Sbjct: 30089570 atgaaaatttcatcatttcctttcttggtagaaagtggctgcatagactgcaggtcctta 30089629 Query: 502 tcaatttcgaccttcctctcttcagacttcttcaaagcatcaagtgctttcctcttctcc 561 || | || |||||||||||||||| ||| |||||| ||| ||||||| ||| ||| Sbjct: 30089630 tcgacctcaaccttcctctcttcag---ccttgaaagcaagaagagctttccgcttttcc 30089686 Query: 562 tccattactttctcaaattcatcaagagtcatctc 596 ||| ||| ||||||||| || |||||||||||||| Sbjct: 30089687 tcccttaatttctcaaactcctcaagagtcatctc 30089721 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 304 ccacggcctcggccaccatagaacctttctccttcagcaggcttcaggaactcgttgatg 363 ||||| || ||||| |||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct: 30089040 ccacgaccacggccgccatagtacctttctccttccgcaggcttcaggaactcattgatg 30089099 Query: 364 ctcacagact 373 |||||||||| Sbjct: 30089100 ctcacagact 30089109 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 547 gctttcctcttctcctccattactttctcaaattcatcaagagtcatctc 596 ||||||||||||||||||| |||||||||| |||| || | ||||||||| Sbjct: 23737706 gctttcctcttctcctccagtactttctcatattcctccaaagtcatctc 23737755 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Plus Query: 598 ttatcctcttccttttcttcttccacaactgcagcacc 635 |||||||||||||| ||||||||| || ||||||||| Sbjct: 30090640 ttatcctcttccttctcttcttcctcatttgcagcacc 30090677 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Plus Query: 328 ctttctccttcagcaggcttcaggaactcgttgatgct 365 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 23737335 ctttcaccttcagccggcttcaggaattcattgatgct 23737372 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttcttcc 621 ||||||||||||| |||||||||| Sbjct: 34410232 ttatcctcttcctcttcttcttcc 34410209 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 cttcccaccgagggttgggaactg 206 ||||||||| |||||||||||||| Sbjct: 30088922 cttcccaccaagggttgggaactg 30088945
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 97.6 bits (49), Expect = 4e-17 Identities = 129/155 (83%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 442 atgaaaacctcatcatttcctttcttggtggaaagtagttgcatagcctgaagatcctta 501 ||||||| |||||||||||||||||||| |||||| | ||||||| ||| || |||||| Sbjct: 85560 atgaaaatttcatcatttcctttcttggtagaaagtggctgcatagactgcaggtcctta 85619 Query: 502 tcaatttcgaccttcctctcttcagacttcttcaaagcatcaagtgctttcctcttctcc 561 || | || |||||||||||||||| ||| |||||| ||| ||||||| ||| ||| Sbjct: 85620 tcgacctcaaccttcctctcttcag---ccttgaaagcaagaagagctttccgcttttcc 85676 Query: 562 tccattactttctcaaattcatcaagagtcatctc 596 ||| ||| ||||||||| || |||||||||||||| Sbjct: 85677 tcccttaatttctcaaactcctcaagagtcatctc 85711 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 304 ccacggcctcggccaccatagaacctttctccttcagcaggcttcaggaactcgttgatg 363 ||||| || ||||| |||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct: 85030 ccacgaccacggccgccatagtacctttctccttccgcaggcttcaggaactcattgatg 85089 Query: 364 ctcacagact 373 |||||||||| Sbjct: 85090 ctcacagact 85099 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Plus Query: 598 ttatcctcttccttttcttcttccacaactgcagcacc 635 |||||||||||||| ||||||||| || ||||||||| Sbjct: 86630 ttatcctcttccttctcttcttcctcatttgcagcacc 86667 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 cttcccaccgagggttgggaactg 206 ||||||||| |||||||||||||| Sbjct: 84912 cttcccaccaagggttgggaactg 84935
>gb|AY104818.1| Zea mays PCO063451 mRNA sequence Length = 1163 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 321 atagaacctttctccttcagcaggcttcaggaactcgttgatgctcacagacttcttagc 380 |||| ||||||| |||||||| ||||||| ||||||||||||||||| |||||||| | Sbjct: 665 atagtacctttcgccttcagctggcttcaagaactcgttgatgctcagggacttcttgcc 606 Query: 381 acgctcttcacgttcagcattctctttcttcttcaa 416 || ||||| | ||||||| | |||||||| ||||| Sbjct: 605 ccgttcttctctttcagcactttctttctttttcaa 570
>dbj|AB236828.1| Trifolium pratense RNA for putative nuclear antigen homolog, complete cds, clone: C2403 Length = 1546 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Minus Query: 334 ccttcagcaggcttcaggaactcgttgatgctcacagacttcttagc 380 |||||||| |||||||| ||||| ||||||||||||||||||||||| Sbjct: 1146 ccttcagctggcttcagaaactcattgatgctcacagacttcttagc 1100
>dbj|AB236752.1| Trifolium pratense RNA for putative nuclear antigen homolog, complete cds, clone: C1477 Length = 1535 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Minus Query: 334 ccttcagcaggcttcaggaactcgttgatgctcacagacttcttagc 380 |||||||| |||||||| ||||| ||||||||||||||||||||||| Sbjct: 1125 ccttcagctggcttcagaaactcattgatgctcacagacttcttagc 1079
>ref|NM_192656.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1068 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 547 gctttcctcttctcctccattactttctcaaattcatcaagagtcatctc 596 ||||||||||||||||||| |||||||||| |||| || | ||||||||| Sbjct: 701 gctttcctcttctcctccagtactttctcatattcctccaaagtcatctc 652 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggcttcaggaactcgttgatgctcacagacttc 375 ||||| |||||||| ||||||||||| || |||||||| | ||||||| Sbjct: 911 ctttcaccttcagccggcttcaggaattcattgatgctaagagacttc 864
>dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F01 Length = 163671 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 547 gctttcctcttctcctccattactttctcaaattcatcaagagtcatctc 596 ||||||||||||||||||| |||||||||| |||| || | ||||||||| Sbjct: 115410 gctttcctcttctcctccagtactttctcatattcctccaaagtcatctc 115459 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Plus Query: 328 ctttctccttcagcaggcttcaggaactcgttgatgct 365 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 115039 ctttcaccttcagccggcttcaggaattcattgatgct 115076
>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0681B11 Length = 144091 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 547 gctttcctcttctcctccattactttctcaaattcatcaagagtcatctc 596 ||||||||||||||||||| |||||||||| |||| || | ||||||||| Sbjct: 18291 gctttcctcttctcctccagtactttctcatattcctccaaagtcatctc 18340 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Plus Query: 328 ctttctccttcagcaggcttcaggaactcgttgatgct 365 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 17920 ctttcaccttcagccggcttcaggaattcattgatgct 17957
>dbj|AK065107.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N19, full insert sequence Length = 1556 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 547 gctttcctcttctcctccattactttctcaaattcatcaagagtcatctc 596 ||||||||||||||||||| |||||||||| |||| || | ||||||||| Sbjct: 1001 gctttcctcttctcctccagtactttctcatattcctccaaagtcatctc 952 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggcttcaggaactcgttgatgctcacagacttc 375 ||||| |||||||| ||||||||||| || |||||||| | ||||||| Sbjct: 1211 ctttcaccttcagccggcttcaggaattcattgatgctaagagacttc 1164
>gb|AF110226.1| Nicotiana tabacum nuclear RNA binding protein (RggA) mRNA, partial cds Length = 1150 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 329 tttctccttcagcaggcttcaggaactcgttgatgct 365 |||||||||| |||||||||||||||||||| ||||| Sbjct: 761 tttctccttctgcaggcttcaggaactcgtttatgct 725 Score = 40.1 bits (20), Expect = 8.8 Identities = 47/56 (83%) Strand = Plus / Minus Query: 550 ttcctcttctcctccattactttctcaaattcatcaagagtcatctcattatcctc 605 ||||||||||| ||||||| |||||| | || ||||| |||||||| || ||||| Sbjct: 558 ttcctcttctcttccattagcttctcatactcttcaagggtcatctccttctcctc 503
>gb|AF110230.1| Spinacia oleracea nuclear RNA binding protein C (RggC) mRNA, partial cds Length = 890 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 334 ccttcagcaggcttcaggaactcgttgatgctcacagacttctt 377 |||||||| |||||||| |||||||| ||||| ||||||||||| Sbjct: 608 ccttcagcgggcttcagaaactcgttaatgctgacagacttctt 565
>gb|AF110229.1| Spinacia oleracea nuclear RNA binding protein B (RggB) mRNA, partial cds Length = 925 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 334 ccttcagcaggcttcaggaactcgttgatgctcacagacttctt 377 |||||||| |||||||| |||||||| ||||| ||||||||||| Sbjct: 576 ccttcagcgggcttcagaaactcgttaatgctgacagacttctt 533
>ref|XM_476001.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1152 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 547 gctttcctcttctcctccattactttctcaaattcatcaagagtcatctcattatcctc 605 ||||||| ||||||||||| ||||||||| |||| || | ||||||||| |||||||| Sbjct: 785 gctttccgcttctcctccagcactttctcatattcctccaaagtcatctccttatcctc 727 Score = 48.1 bits (24), Expect = 0.036 Identities = 45/52 (86%) Strand = Plus / Minus Query: 326 acctttctccttcagcaggcttcaggaactcgttgatgctcacagacttctt 377 |||| ||||||||||| ||||||| ||| || |||||||||| |||||||| Sbjct: 1000 acctctctccttcagccggcttcaagaattcattgatgctcagggacttctt 949
>dbj|AK073438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046L01, full insert sequence Length = 1699 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 547 gctttcctcttctcctccattactttctcaaattcatcaagagtcatctcattatcctc 605 ||||||| ||||||||||| ||||||||| |||| || | ||||||||| |||||||| Sbjct: 1009 gctttccgcttctcctccagcactttctcatattcctccaaagtcatctccttatcctc 951 Score = 48.1 bits (24), Expect = 0.036 Identities = 45/52 (86%) Strand = Plus / Minus Query: 326 acctttctccttcagcaggcttcaggaactcgttgatgctcacagacttctt 377 |||| ||||||||||| ||||||| ||| || |||||||||| |||||||| Sbjct: 1224 acctctctccttcagccggcttcaagaattcattgatgctcagggacttctt 1173
>ref|NM_117785.2| Arabidopsis thaliana RNA binding AT4G16830 mRNA, complete cds Length = 1536 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 343 ggcttcaggaactcgttgatgctcacagacttcttagc 380 |||||||| ||||| ||||||||||||| ||||||||| Sbjct: 1090 ggcttcagaaactcattgatgctcacagccttcttagc 1053 Score = 48.1 bits (24), Expect = 0.036 Identities = 45/52 (86%) Strand = Plus / Minus Query: 554 tcttctcctccattactttctcaaattcatcaagagtcatctcattatcctc 605 |||||||||| | || ||||||| | |||||||||||||| || |||||||| Sbjct: 897 tcttctcctcgagtattttctcatactcatcaagagtcatttccttatcctc 846
>gb|DQ207876.1| Solanum tuberosum clone 092B12 nuclear RNA binding protein-like mRNA, complete cds Length = 1480 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggcttcaggaactcgttgatgct 365 |||||||| |||||||||||||| |||||||| ||||| Sbjct: 1137 ctttctccctcagcaggcttcagaaactcgtttatgct 1100
>gb|BT000559.1| Arabidopsis thaliana nuclear antigen homolog (At4g16830/dl4440w) mRNA, complete cds Length = 1068 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 343 ggcttcaggaactcgttgatgctcacagacttcttagc 380 |||||||| ||||| ||||||||||||| ||||||||| Sbjct: 908 ggcttcagaaactcattgatgctcacagccttcttagc 871 Score = 48.1 bits (24), Expect = 0.036 Identities = 45/52 (86%) Strand = Plus / Minus Query: 554 tcttctcctccattactttctcaaattcatcaagagtcatctcattatcctc 605 |||||||||| | || ||||||| | |||||||||||||| || |||||||| Sbjct: 715 tcttctcctcgagtattttctcatactcatcaagagtcatttccttatcctc 664
>gb|AY096500.1| Arabidopsis thaliana putative nuclear antigen-like protein (At4g16830) mRNA, complete cds Length = 1099 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 343 ggcttcaggaactcgttgatgctcacagacttcttagc 380 |||||||| ||||| ||||||||||||| ||||||||| Sbjct: 908 ggcttcagaaactcattgatgctcacagccttcttagc 871 Score = 48.1 bits (24), Expect = 0.036 Identities = 45/52 (86%) Strand = Plus / Minus Query: 554 tcttctcctccattactttctcaaattcatcaagagtcatctcattatcctc 605 |||||||||| | || ||||||| | |||||||||||||| || |||||||| Sbjct: 715 tcttctcctcgagtattttctcatactcatcaagagtcatttccttatcctc 664
>gb|AY063896.1| Arabidopsis thaliana putative nuclear antigen homolog (At4g16830) mRNA, complete cds Length = 1443 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 343 ggcttcaggaactcgttgatgctcacagacttcttagc 380 |||||||| ||||| ||||||||||||| ||||||||| Sbjct: 1064 ggcttcagaaactcattgatgctcacagccttcttagc 1027 Score = 48.1 bits (24), Expect = 0.036 Identities = 45/52 (86%) Strand = Plus / Minus Query: 554 tcttctcctccattactttctcaaattcatcaagagtcatctcattatcctc 605 |||||||||| | || ||||||| | |||||||||||||| || |||||||| Sbjct: 871 tcttctcctcgagtattttctcatactcatcaagagtcatttccttatcctc 820
>gb|AY127018.1| Arabidopsis thaliana AT4g16830/dl4440w mRNA, complete cds Length = 1431 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 343 ggcttcaggaactcgttgatgctcacagacttcttagc 380 |||||||| ||||| ||||||||||||| ||||||||| Sbjct: 1071 ggcttcagaaactcattgatgctcacagccttcttagc 1034 Score = 48.1 bits (24), Expect = 0.036 Identities = 45/52 (86%) Strand = Plus / Minus Query: 554 tcttctcctccattactttctcaaattcatcaagagtcatctcattatcctc 605 |||||||||| | || ||||||| | |||||||||||||| || |||||||| Sbjct: 878 tcttctcctcgagtattttctcatactcatcaagagtcatttccttatcctc 827
>emb|BX827515.1|CNS0A2VZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS68ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1287 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 343 ggcttcaggaactcgttgatgctcacagacttcttagc 380 |||||||| ||||| ||||||||||||| ||||||||| Sbjct: 906 ggcttcagaaactcattgatgctcacagccttcttagc 869 Score = 48.1 bits (24), Expect = 0.036 Identities = 45/52 (86%) Strand = Plus / Minus Query: 554 tcttctcctccattactttctcaaattcatcaagagtcatctcattatcctc 605 |||||||||| | || ||||||| | |||||||||||||| || |||||||| Sbjct: 713 tcttctcctcgagtattttctcatactcatcaagagtcatttccttatcctc 662
>dbj|AB236845.1| Trifolium pratense RNA for hypothetical protein, complete cds, clone: C461 Length = 1552 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 331 tctccttcagcaggcttcaggaactcgttgatgctca 367 |||||||||||||||||||| ||||| || ||||||| Sbjct: 1145 tctccttcagcaggcttcagaaactcattaatgctca 1109
>emb|AJ313093.1|BVU313093 Beta vulgaris mRNA for salt tolerance protein 2 (sato2 gene) Length = 1071 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 421 tccttatcagcacccagtttgatgaaaacctcatcat 457 |||||||||| |||||| || |||||||||||||||| Sbjct: 854 tccttatcagaacccagctttatgaaaacctcatcat 818 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Minus Query: 550 ttcctcttctcctccattactttctcaaattcatcaagagtcat 593 |||||||||||||||| ||| |||||| | || ||||||||||| Sbjct: 728 ttcctcttctcctccaataccttctcatactcctcaagagtcat 685 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 340 gcaggcttcaggaactcgttgatgctcacagacttctt 377 |||||||| || || || |||||||||||||||||||| Sbjct: 929 gcaggcttaagaaattcattgatgctcacagacttctt 892
>gb|AY084828.1| Arabidopsis thaliana clone 118826 mRNA, complete sequence Length = 1474 Score = 48.1 bits (24), Expect = 0.036 Identities = 45/52 (86%) Strand = Plus / Minus Query: 554 tcttctcctccattactttctcaaattcatcaagagtcatctcattatcctc 605 |||||||||| | || ||||||| | |||||||||||||| || |||||||| Sbjct: 874 tcttctcctcaagtattttctcatactcatcaagagtcatttccttatcctc 823 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 346 ttcaggaactcgttgatgctcacagacttcttagc 380 ||||| ||||| ||||||||||||| ||||||||| Sbjct: 1064 ttcagaaactcattgatgctcacagccttcttagc 1030
>emb|AJ313092.1|BVU313092 Beta vulgaris mRNA for salt tolerance protein 1 (sato1 gene) Length = 1300 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Minus Query: 334 ccttcagcaggcttcaggaactcgttgatgctcacagacttctt 377 ||||||||||||||||| || || || ||||| ||||||||||| Sbjct: 982 ccttcagcaggcttcagaaattcattaatgctgacagacttctt 939
>ref|NM_178949.1| Arabidopsis thaliana unknown protein AT4G01450 transcript variant AT4G01450.1 mRNA, complete cds Length = 1359 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttccac 623 ||||||||||||||||||||||| Sbjct: 1107 tcctcttccttttcttcttccac 1085
>ref|NM_202766.1| Arabidopsis thaliana unknown protein AT4G01450 transcript variant AT4G01450.3 mRNA, complete cds Length = 1336 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttccac 623 ||||||||||||||||||||||| Sbjct: 1063 tcctcttccttttcttcttccac 1041
>ref|NM_116375.3| Arabidopsis thaliana unknown protein AT4G01450 transcript variant AT4G01450.2 mRNA, complete cds Length = 1453 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttccac 623 ||||||||||||||||||||||| Sbjct: 1161 tcctcttccttttcttcttccac 1139
>emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4 Length = 198697 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttccac 623 ||||||||||||||||||||||| Sbjct: 32997 tcctcttccttttcttcttccac 32975
>emb|BX826492.1|CNS0A3BQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB30ZF03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1257 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttccac 623 ||||||||||||||||||||||| Sbjct: 1149 tcctcttccttttcttcttccac 1127
>emb|BX827878.1|CNS0A328 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZC06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1441 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttccac 623 ||||||||||||||||||||||| Sbjct: 1150 tcctcttccttttcttcttccac 1128
>gb|BT005510.1| Arabidopsis thaliana clone U50500 unknown protein (At4g01450) mRNA, complete cds Length = 1063 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttccac 623 ||||||||||||||||||||||| Sbjct: 977 tcctcttccttttcttcttccac 955
>gb|AF096370.1|F11O4 Arabidopsis thaliana BAC F11O4 Length = 72872 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttccac 623 ||||||||||||||||||||||| Sbjct: 70580 tcctcttccttttcttcttccac 70602
>dbj|AK117409.1| Arabidopsis thaliana At4g01450 mRNA for unknown protein, complete cds, clone: RAFL17-01-J10 Length = 1386 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttccac 623 ||||||||||||||||||||||| Sbjct: 1130 tcctcttccttttcttcttccac 1108
>emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chromosome 4, complete sequence Length = 230614 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 599 tatcctcttccttttcttcttcc 621 ||||||||||||||||||||||| Sbjct: 151870 tatcctcttccttttcttcttcc 151848
>ref|XM_458392.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C17446g) partial mRNA Length = 1638 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 597 attatcctcttccttttcttct 618 |||||||||||||||||||||| Sbjct: 1302 attatcctcttccttttcttct 1281
>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022J22, complete sequence Length = 142854 Score = 44.1 bits (22), Expect = 0.56 Identities = 37/42 (88%) Strand = Plus / Minus Query: 326 acctttctccttcagcaggcttcaggaactcgttgatgctca 367 |||| ||||||||||| ||||||| ||| || |||||||||| Sbjct: 21853 acctctctccttcagccggcttcaagaattcattgatgctca 21812 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Minus Query: 547 gctttcctcttctcctccattactttctcaaattcatcaagagtcatctc 596 ||||||| ||||||||||| ||||||||| |||| || | ||||||||| Sbjct: 21452 gctttccgcttctcctccagcactttctcatattcctccaaagtcatctc 21403
>gb|AC105260.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_D04, complete sequence Length = 100800 Score = 44.1 bits (22), Expect = 0.56 Identities = 37/42 (88%) Strand = Plus / Minus Query: 326 acctttctccttcagcaggcttcaggaactcgttgatgctca 367 |||| ||||||||||| ||||||| ||| || |||||||||| Sbjct: 64618 acctctctccttcagccggcttcaagaattcattgatgctca 64577 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Minus Query: 547 gctttcctcttctcctccattactttctcaaattcatcaagagtcatctc 596 ||||||| ||||||||||| ||||||||| |||| || | ||||||||| Sbjct: 64217 gctttccgcttctcctccagcactttctcatattcctccaaagtcatctc 64168
>emb|CT026474.3| Macaca mulatta chromosome 9 BAC CH250-270M9, complete sequence Length = 168693 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttccacaac 626 ||||||||||||||||||||| |||| Sbjct: 77635 tcctcttccttttcttcttccccaac 77660
>ref|XM_822401.1| Trypanosoma brucei TREU927 ATP-dependent DEAD/H RNA helicase (Tb09.211.3510) partial mRNA Length = 2208 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 289 ccgcggcccctgccgccacggcctcg 314 ||||| |||||||||||||||||||| Sbjct: 260 ccgcgacccctgccgccacggcctcg 235
>emb|AL359922.10| Human DNA sequence from clone RP11-70L8 on chromosome 9 Contains a pseudogene similar to part of beta tubulin, the MTAP gene for methylthioadenosine phosphorylase (MSAP), a novel gene and a CpG island, complete sequence Length = 168656 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttccacaac 626 ||||||||||||||||||||| |||| Sbjct: 22875 tcctcttccttttcttcttccccaac 22850
>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii Length = 1592360 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 597 attatcctcttccttttcttct 618 |||||||||||||||||||||| Sbjct: 1435442 attatcctcttccttttcttct 1435421
>ref|XM_213983.3| PREDICTED: Rattus norvegicus similar to KIAA1078 protein (predicted) (LOC289400), mRNA Length = 6845 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 546 tgctttcctcttctcctccatt 567 |||||||||||||||||||||| Sbjct: 1505 tgctttcctcttctcctccatt 1484
>gb|AC140111.3| Mus musculus BAC clone RP23-16F4 from 12, complete sequence Length = 175729 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 400 ttctctttcttcttcaaagcctcctt 425 ||||||||||||||||| |||||||| Sbjct: 153024 ttctctttcttcttcaacgcctcctt 153049
>gb|AC126269.3| Mus musculus BAC clone RP23-230D6 from 12, complete sequence Length = 184181 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 400 ttctctttcttcttcaaagcctcctt 425 ||||||||||||||||| |||||||| Sbjct: 15113 ttctctttcttcttcaacgcctcctt 15138
>gb|AC161382.4| Mus musculus BAC clone RP23-25A17 from chromosome 9, complete sequence Length = 169123 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 593 tctcattatcctcttccttttcttcttcc 621 |||| ||||||||||||||||| |||||| Sbjct: 35727 tctctttatcctcttccttttcctcttcc 35699
>ref|NM_001003232.1| Canis familiaris calnexin (CANX), mRNA Length = 3302 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 1705 tcctcttccttttcttcttcc 1685
>gb|AY752997.1| Penaeus monodon clone ct108 microsatellite sequence Length = 679 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 442 tcctcttccttttcttcttcc 462
>gb|AF469174.1| Cryptosporidium parvum strain cpa16 microsatellite sequence Length = 238 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 102 tcctcttccttttcttcttcc 82
>gb|AC124981.25| Mus musculus chromosome 5, clone RP24-170P20, complete sequence Length = 153767 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 137888 tcctcttccttttcttcttcc 137868
>gb|AC166079.2| Mus musculus BAC clone RP23-51L15 from chromosome 7, complete sequence Length = 193749 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 81959 tcctcttccttttcttcttcc 81939
>gb|AC111143.10| Mus musculus chromosome 3, clone RP23-372C7, complete sequence Length = 147125 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 76422 tcctcttccttttcttcttcc 76442
>ref|XM_878987.1| PREDICTED: Bos taurus similar to nuclear receptor co-repressor 1, transcript variant 12 (LOC507663), mRNA Length = 8561 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1632 ttatcctcttccttttcttct 1612
>ref|XM_866711.1| PREDICTED: Bos taurus similar to nuclear receptor co-repressor 1, transcript variant 3 (LOC507663), mRNA Length = 8609 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1632 ttatcctcttccttttcttct 1612
>ref|XM_584318.2| PREDICTED: Bos taurus similar to nuclear receptor co-repressor 1, transcript variant 1 (LOC507663), mRNA Length = 8822 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1635 ttatcctcttccttttcttct 1615
>ref|XM_878906.1| PREDICTED: Bos taurus similar to nuclear receptor co-repressor 1, transcript variant 11 (LOC507663), mRNA Length = 8206 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1235 ttatcctcttccttttcttct 1215
>ref|XM_878879.1| PREDICTED: Bos taurus similar to nuclear receptor co-repressor 1, transcript variant 10 (LOC507663), mRNA Length = 8252 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1632 ttatcctcttccttttcttct 1612
>ref|XM_878850.1| PREDICTED: Bos taurus similar to nuclear receptor co-repressor 1, transcript variant 9 (LOC507663), mRNA Length = 7547 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1632 ttatcctcttccttttcttct 1612
>ref|XM_878817.1| PREDICTED: Bos taurus similar to nuclear receptor co-repressor 1, transcript variant 8 (LOC507663), mRNA Length = 2962 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1634 ttatcctcttccttttcttct 1614
>ref|XM_878787.1| PREDICTED: Bos taurus similar to nuclear receptor co-repressor 1, transcript variant 7 (LOC507663), mRNA Length = 2878 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1550 ttatcctcttccttttcttct 1530
>ref|XM_878726.1| PREDICTED: Bos taurus similar to nuclear receptor co-repressor 1, transcript variant 5 (LOC507663), mRNA Length = 2963 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1635 ttatcctcttccttttcttct 1615
>ref|XM_878695.1| PREDICTED: Bos taurus similar to nuclear receptor co-repressor 1, transcript variant 4 (LOC507663), mRNA Length = 7459 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1632 ttatcctcttccttttcttct 1612
>gb|AC161509.8| Mus musculus chromosome 7, clone RP23-53O17, complete sequence Length = 196638 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 129541 tcctcttccttttcttcttcc 129521
>gb|AC144902.2| Mus musculus BAC clone RP23-400D9 from chromosome 5, complete sequence Length = 204858 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 184163 tcctcttccttttcttcttcc 184183
>gb|AC126426.3| Mus musculus BAC clone RP24-291G13 from chromosome 13, complete sequence Length = 201051 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 atcctcttccttttcttcttc 620 ||||||||||||||||||||| Sbjct: 186379 atcctcttccttttcttcttc 186399
>gb|AC120837.6| Mus musculus Strain C57BL6/J chromosome 11 BAC, RP23-439E2, Complete Sequence, complete sequence Length = 211996 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 206489 tcctcttccttttcttcttcc 206509
>gb|AC129015.4| Mus musculus BAC clone RP24-364A8 from chromosome 5, complete sequence Length = 165259 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 47121 tcctcttccttttcttcttcc 47141
>gb|AC122540.4| Mus musculus BAC clone RP24-555K13 from chromosome 17, complete sequence Length = 149770 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 92961 tcctcttccttttcttcttcc 92981
>ref|XM_642900.1| Entamoeba histolytica HM-1:IMSS protein kinase (650.t00003) partial mRNA Length = 2400 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 569 ctttctcaaattcatcaagag 589 ||||||||||||||||||||| Sbjct: 1741 ctttctcaaattcatcaagag 1721
>gb|AC093582.3| Homo sapiens BAC clone RP13-254B10 from 7, complete sequence Length = 91224 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 76910 tcctcttccttttcttcttcc 76930
>gb|AC110236.8| Mus musculus chromosome 15, clone RP23-104L4, complete sequence Length = 233499 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 66756 tcctcttccttttcttcttcc 66776
>emb|AJ007041.1|HSA7041 Homo sapiens mRNA for trithorax homologue 2 Length = 8469 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 ccgcggcccctgccgccacggcctc 313 |||||||||||||| |||||||||| Sbjct: 887 ccgcggcccctgcctccacggcctc 863
>emb|AL603650.10| Human DNA sequence from clone RP11-263F14 on chromosome 9 Contains the 3'end of COL5A1 for collagen (type V) alpha 1,a pseudogene similar to part of a ficolin family protein and the FCN2 gene for ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin), complete sequence Length = 131466 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 ttgataaaggggtggtactcg 163 ||||||||||||||||||||| Sbjct: 98201 ttgataaaggggtggtactcg 98181
>emb|AL391419.13| Human DNA sequence from clone RP11-54I5 on chromosome X Contains a glutamic-oxaloacetic transaminase 2 (GOT2) pseudogene, complete sequence Length = 34547 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 351 tcctcttccttttcttcttcc 331
>emb|AL445929.5| Human DNA sequence from clone RP11-408M7 on chromosome 13 Contains a CpG island, complete sequence Length = 169403 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 140874 tcctcttccttttcttcttcc 140894
>emb|AL160398.27| Human DNA sequence from clone RP11-15N12 on chromosome 6 Contains the 5' end of the gene for the possible ortholog of R. norvegicus ion transporter protein (NRITP), complete sequence Length = 134995 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 26865 tcctcttccttttcttcttcc 26845
>gb|AC129292.4| Mus musculus chromosome 5 clone RP24-507A8, complete sequence Length = 186200 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 51495 tcctcttccttttcttcttcc 51475
>emb|AL139139.9| Human DNA sequence from clone RP5-1052I5 on chromosome 1p22.1-31.1 Contains gene LOC339524 and the 3' end of a variant of the HS2ST1 gene for heparan sulfate 2-O-sulfotransferase 1 (FLJ11317), complete sequence Length = 82299 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 16908 tcctcttccttttcttcttcc 16928
>emb|AL117332.16|HSJ198K11 Human DNA sequence from clone RP1-198K11 on chromosome 20 Contains the 3' end of the C20orf19 gene for hypothalamus protein HT013, the 5' end of the XRN2 gene for 5'-3' exoribonuclease 2, a novel zinc finger pseudogene and a CpG island, complete sequence Length = 134132 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 44279 tcctcttccttttcttcttcc 44259
>emb|AL713870.26| Mouse DNA sequence from clone RP24-239D8 on chromosome 11 Contains the 5' end of the Slc36a3 gene for solute carrier family 36 (proton/amino acid symporter) member 3, two novel genes, the Tramd1 gene for tramdorin 1 (transmembrane domain rich protein), the Slc36a1 gene for solute carrier family 36 (proton/amino acid symporter) member 1 and the gene for the ortholog of human and rat FAT tumor suppressor homolog 2 (Drosophila) FAT2, complete sequence Length = 188782 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 50179 tcctcttccttttcttcttcc 50159
>emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on chromosome 11 Contains the 3' end of a variant of the gene for a novel protein similar to human sperm antigen HCMOGT-1 (B230396K10Rik), the Adora2b gene for adenosine A2b receptor, the gene for a novel protein (2410012H22Rik), a somatic cytochrome c (Cycs) pseudogene, a novel gene, a novel pseudogene, the gene for a novel protein (2810460C24Rik), the 3' end of the Ncor1 gene for nuclear receptor co-repressor 1 and two CpG islands, complete sequence Length = 214834 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 3700 ttatcctcttccttttcttct 3680
>emb|AL645594.9| Mouse DNA sequence from clone RP23-316C11 on chromosome 11 Contains the Cct6b gene for chaperonin subunit 6b (zeta), a barrier to autointegration factor 1 (Banf1) pseudogene, a GTP binding protein 3 (Gtpbp3) pseudogene, a ribosomal protein S20 (Rps20) pseudogene, three novel genes, the Lig3 gene for ATP-dependent DNA ligase III,, complete sequence Length = 178364 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 93747 tcctcttccttttcttcttcc 93727
>gb|BC062162.1| Mus musculus nuclear receptor co-repressor 1, mRNA (cDNA clone IMAGE:30240594), containing frame-shift errors Length = 1819 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1799 ttatcctcttccttttcttct 1779
>gb|BC029627.1| Mus musculus nuclear receptor co-repressor 1, mRNA (cDNA clone IMAGE:4501757), containing frame-shift errors Length = 1835 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1798 ttatcctcttccttttcttct 1778
>gb|AC090647.6| Genomic sequence for Mus musculus, clone RP23-252I12, complete sequence Length = 139891 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 15059 tcctcttccttttcttcttcc 15079
>ref|NM_011308.2| Mus musculus nuclear receptor co-repressor 1 (Ncor1), mRNA Length = 8740 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1820 ttatcctcttccttttcttct 1800
>gb|AC183380.3| Pan troglodytes BAC clone CH251-605G19 from chromosome 7, complete sequence Length = 223844 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 60445 tcctcttccttttcttcttcc 60465
>gb|AF042797.2| Takifugu rubripes FRG1 (FRG1), N-acylsphingosine amidohydrolase (ASAH), PCM1 (PCM1), squamous cell carcinoma antigen recognised by cytotoxic T lymphocytes (SART1), oxysterol binding protein 1 (OSBP1), and caspase 3 (CASP3) genes, complete cds Length = 42616 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 cgccacggcctcggccaccat 322 ||||||||||||||||||||| Sbjct: 30130 cgccacggcctcggccaccat 30150
>gb|AC006429.4| Arabidopsis thaliana chromosome 2 clone F15K19 map mi421, complete sequence Length = 94875 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 64588 tcctcttccttttcttcttcc 64608
>dbj|AK137695.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930037N14 product:nuclear receptor co-repressor 1, full insert sequence Length = 2981 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 367 ttatcctcttccttttcttct 347
>gb|AC093425.2| Homo sapiens chromosome 1 clone RP11-470E16, complete sequence Length = 179499 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 28423 tcctcttccttttcttcttcc 28403
>gb|AD000671.1| Homo sapiens DNA from chromosome 19-cosmid f24109 containing HRX2, genomic sequence Length = 46251 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 ccgcggcccctgccgccacggcctc 313 |||||||||||||| |||||||||| Sbjct: 15745 ccgcggcccctgcctccacggcctc 15721
>gb|AF292120.1|AF292120 Takifugu rubripes clone 16-k18 squamous-cell carcinoma T-cell-recognized antigen (SART1) mRNA, partial cds Length = 1583 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 cgccacggcctcggccaccat 322 ||||||||||||||||||||| Sbjct: 900 cgccacggcctcggccaccat 920
>gb|AF292119.1|AF292119 Takifugu rubripes clone 16-i12 squamous-cell carcinoma T-cell-recognized antigen (SART1) mRNA, partial cds Length = 1318 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 cgccacggcctcggccaccat 322 ||||||||||||||||||||| Sbjct: 635 cgccacggcctcggccaccat 655
>ref|NM_058707.3| Caenorhabditis elegans LiPid Depleted family member (lpd-6) (lpd-6) mRNA, complete cds Length = 1824 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 268 cctctgaagcctccacgatccccgc 292 |||||||||||||||||||| |||| Sbjct: 1430 cctctgaagcctccacgatctccgc 1406
>gb|BC086657.1| Mus musculus nuclear receptor co-repressor 1, mRNA (cDNA clone MGC:96258 IMAGE:30545994), complete cds Length = 7264 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1601 ttatcctcttccttttcttct 1581
>ref|NM_014727.1| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia 4 (MLL4), mRNA Length = 8469 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 ccgcggcccctgccgccacggcctc 313 |||||||||||||| |||||||||| Sbjct: 887 ccgcggcccctgcctccacggcctc 863
>gb|AC156283.6| Mus musculus 6 BAC RP24-327I4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172188 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 164415 tcctcttccttttcttcttcc 164435
>gb|AC154733.2| Mus musculus BAC clone RP24-380I6 from chromosome 13, complete sequence Length = 209751 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 atcctcttccttttcttcttc 620 ||||||||||||||||||||| Sbjct: 34149 atcctcttccttttcttcttc 34169
>gb|AF186605.1|AF186605 Homo sapiens MLL2 protein mRNA, partial cds Length = 8140 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 ccgcggcccctgccgccacggcctc 313 |||||||||||||| |||||||||| Sbjct: 559 ccgcggcccctgcctccacggcctc 535
>gb|AC084594.1|CBRG42E21 Caenorhabditis briggsae cosmid G42E21, complete sequence Length = 39130 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 37401 tcctcttccttttcttcttcc 37381
>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence Length = 155710 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 596 cattatcctcttccttttcttcttc 620 ||||||||||||| ||||||||||| Sbjct: 27523 cattatcctcttctttttcttcttc 27499
>gb|AF043700.1| Caenorhabditis elegans cosmid K09H9, complete sequence Length = 37881 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 cctctgaagcctccacgatccccgc 292 |||||||||||||||||||| |||| Sbjct: 22913 cctctgaagcctccacgatctccgc 22937
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 493677 tcctcttccttttcttcttcc 493657
>gb|AC140442.4| Mus musculus BAC clone RP24-106P1 from 12, complete sequence Length = 153574 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 27742 tcctcttccttttcttcttcc 27762
>gb|BC083571.1| Rattus norvegicus progesterone receptor membrane component 2, mRNA (cDNA clone MGC:93874 IMAGE:7112203), complete cds Length = 1974 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 970 tcctcttccttttcttcttcc 990
>emb|AL831741.16| Mouse DNA sequence from clone RP23-337N2 on chromosome 4, complete sequence Length = 213347 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 130193 tcctcttccttttcttcttcc 130213
>ref|NM_001008374.1| Rattus norvegicus progesterone receptor membrane component 2 (Pgrmc2), mRNA Length = 1974 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 970 tcctcttccttttcttcttcc 990
>gb|AC135017.3| Mus musculus BAC clone RP24-254D14 from 1, complete sequence Length = 190598 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 106717 tcctcttccttttcttcttcc 106737
>gb|AC132230.3| Mus musculus BAC clone RP24-484C13 from 1, complete sequence Length = 177845 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 119705 tcctcttccttttcttcttcc 119725
>gb|AC132431.3| Mus musculus BAC clone RP23-211M23 from 6, complete sequence Length = 207155 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 126789 tcctcttccttttcttcttcc 126769
>gb|AC131693.5| Mus musculus BAC clone RP23-391D10 from 14, complete sequence Length = 220202 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 85761 tcctcttccttttcttcttcc 85741
>gb|U35312.1|MMU35312 Mus musculus nuclear receptor co-repressor mRNA, complete cds Length = 7780 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttct 618 ||||||||||||||||||||| Sbjct: 1678 ttatcctcttccttttcttct 1658
>gb|AC163040.5| Mus musculus BAC clone RP23-71C23 from chromosome 12, complete sequence Length = 235086 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 196539 tcctcttccttttcttcttcc 196559
>emb|AL611924.14| Mouse DNA sequence from clone RP23-106K5 on chromosome 4, complete sequence Length = 164958 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 53878 tcctcttccttttcttcttcc 53858
>emb|AL713881.1|CNS07YOX Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 527G2 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 143241 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 89537 tcctcttccttttcttcttcc 89517
>emb|AL590968.8| Mouse DNA sequence from clone RP23-392I3 on chromosome 11, complete sequence Length = 217092 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 200130 tcctcttccttttcttcttcc 200110
>emb|X53616.1|CDPP90 C.domesticus calnexin (pp90) mRNA Length = 3302 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 1705 tcctcttccttttcttcttcc 1685
>emb|AL824705.5| Mouse DNA sequence from clone RP23-102G9 on chromosome 4, complete sequence Length = 144458 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 551 tcctcttctcctccattactt 571 ||||||||||||||||||||| Sbjct: 79813 tcctcttctcctccattactt 79793
>emb|AL713886.1|CNS07YOY Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 247A17 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 126128 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttcc 621 ||||||||||||||||||||| Sbjct: 22958 tcctcttccttttcttcttcc 22938
>gb|BC011812.2| Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 12, mRNA (cDNA clone IMAGE:3051349), partial cds Length = 2079 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cccgcggcccctgccgccac 307 |||||||||||||||||||| Sbjct: 1364 cccgcggcccctgccgccac 1345
>gb|AC108429.11| Mus musculus chromosome 7, clone RP23-161B5, complete sequence Length = 186903 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 tcttccttttcttcttccac 623 |||||||||||||||||||| Sbjct: 45073 tcttccttttcttcttccac 45092
>ref|NM_121946.1| Arabidopsis thaliana ATPase, coupled to transmembrane movement of substances AT5G19410 mRNA, complete cds Length = 1875 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 106 tcctcttccttttcttcttc 125
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 282 acgatccccgcggcccctgccgccacggcctc 313 |||||| ||||||||||||| ||||| ||||| Sbjct: 1967929 acgatctccgcggcccctgcggccactgcctc 1967960
>ref|XM_519350.1| PREDICTED: Pan troglodytes similar to GRIP and coiled-coil domain-containing protein 1 (Golgi coiled coil protein 1) (LOC463697), mRNA Length = 2130 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 148 ctttctccttcagcaggctt 129
>ref|XM_527071.1| PREDICTED: Pan troglodytes similar to Homeobox protein CDX-1 (Caudal-type homeobox protein 1) (LOC471693), mRNA Length = 798 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccccgcggcccctgccgcca 306 |||||||||||||||||||| Sbjct: 237 ccccgcggcccctgccgcca 256
>ref|NM_028900.2| Mus musculus golgi coiled coil 1 (Gcc1), mRNA Length = 4051 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 556 ctttctccttcagcaggctt 537
>gb|U89573.1|RNU89573 Rattus norvegicus microsatellite sequence D0Mco44 Length = 305 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 attcatcaagagtcatctca 597 |||||||||||||||||||| Sbjct: 170 attcatcaagagtcatctca 189
>gb|AY016021.1| Mus musculus clone 03245 alpha globin gene cluster, complete sequence Length = 183192 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cctccacgatccccgcggcc 296 |||||||||||||||||||| Sbjct: 24852 cctccacgatccccgcggcc 24833
>ref|XM_594166.2| PREDICTED: Bos taurus calnexin (canx), partial mRNA Length = 4099 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 1155 tcctcttccttttcttcttc 1136
>gb|BC066807.1| Mus musculus golgi coiled coil 1, mRNA (cDNA clone MGC:76506 IMAGE:30101518), complete cds Length = 4048 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 525 ctttctccttcagcaggctt 506
>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBb0061I18, complete sequence Length = 143163 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 594 ctcattatcctcttcctttt 613 |||||||||||||||||||| Sbjct: 142839 ctcattatcctcttcctttt 142858
>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09, complete sequence Length = 168192 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 ctcattatcctcttcctttt 613 |||||||||||||||||||| Sbjct: 160492 ctcattatcctcttcctttt 160473
>gb|BC081184.1| Xenopus laevis MGC84407 protein, mRNA (cDNA clone MGC:84407 IMAGE:7019024), complete cds Length = 3852 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 tgctttcctcttctcctcca 565 |||||||||||||||||||| Sbjct: 1189 tgctttcctcttctcctcca 1170
>gb|AC123658.9| Mus musculus chromosome 15, clone RP23-192C13, complete sequence Length = 211158 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 13274 tcctcttccttttcttcttc 13255 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 13181 tcctcttccttttcttcttc 13162
>gb|AC114459.6| Rattus norvegicus 4 BAC CH230-388N23 (Children's Hospital Oakland Research Institute) complete sequence Length = 190345 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 6525 tcctcttccttttcttcttc 6544
>ref|XM_416732.1| PREDICTED: Gallus gallus similar to SH3 domain-binding glutamic acid-rich protein (SH3BGR protein) (21-glutamic acid-rich protein) (21-GARP) (LOC418523), mRNA Length = 1217 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 cctcttccttttcttcttcc 621 |||||||||||||||||||| Sbjct: 648 cctcttccttttcttcttcc 629
>gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromosome unknown, complete sequence Length = 185010 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 141074 tcctcttccttttcttcttc 141093
>gb|AC182400.3| Pan troglodytes BAC clone CH251-86D19 from chromosome 8, complete sequence Length = 150420 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 128937 tcctcttccttttcttcttc 128918
>ref|XM_953913.1| Neurospora crassa OR74A hypothetical protein (NCU08978.1) partial mRNA Length = 2367 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 ccgccaccgaatccgcctct 272 |||||||||||||||||||| Sbjct: 1703 ccgccaccgaatccgcctct 1722
>ref|XM_331369.1| Neurospora crassa OR74A hypothetical protein (NCU08978.1) partial mRNA Length = 2367 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 ccgccaccgaatccgcctct 272 |||||||||||||||||||| Sbjct: 1703 ccgccaccgaatccgcctct 1722
>gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-434O14, complete sequence Length = 191358 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 56571 ctttctccttcagcaggctt 56590
>gb|AC100378.10| Mus musculus chromosome 10, clone RP23-130O4, complete sequence Length = 218363 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 24421 tcctcttccttttcttcttc 24440
>ref|XM_711792.1| Candida albicans SC5314 putative protein disulfide isomerase (CaO19_12595), mRNA Length = 1683 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 tcttccttttcttcttccac 623 |||||||||||||||||||| Sbjct: 1622 tcttccttttcttcttccac 1603
>gb|AC146249.2| Pan troglodytes BAC clone CH251-140O11 from Y, complete sequence Length = 173078 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 125271 tcctcttccttttcttcttc 125290
>gb|AC122895.5| Mus musculus BAC clone RP23-69K14 from chromosome 18, complete sequence Length = 215539 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 114229 tcctcttccttttcttcttc 114210 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 113511 tcctcttccttttcttcttc 113492
>ref|XM_451299.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A06710g predicted mRNA Length = 1272 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 500 tcctcttccttttcttcttc 481
>gb|AC132844.7| Mus musculus chromosome 17, clone RP24-481P13, complete sequence Length = 225183 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 aaacctcatcatttcctttcttgg 469 |||||||||||||||||| ||||| Sbjct: 3296 aaacctcatcatttccttccttgg 3273
>gb|AC107531.8| Rattus norvegicus 1 BAC CH230-158N3 (Children's Hospital Oakland Research Institute) complete sequence Length = 173190 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 595 tcattatcctcttccttttcttct 618 ||||| |||||||||||||||||| Sbjct: 56326 tcattttcctcttccttttcttct 56349
>gb|AY560385.1| Tagetes minuta thermoinhibition-associated THB-4 protein mRNA, partial cds Length = 345 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 578 attcatcaagagtcatctcattatcctc 605 |||| |||||||||||||| |||||||| Sbjct: 64 attcttcaagagtcatctccttatcctc 37
>gb|AC167229.4| Mus musculus BAC RP24-337D17 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 197711 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 49306 tcctcttccttttcttcttc 49325
>gb|BC059616.1| Danio rerio hypothetical protein LOC402878, mRNA (cDNA clone IMAGE:4786972), partial cds Length = 1217 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 tgctttcctcttctcctcca 565 |||||||||||||||||||| Sbjct: 1145 tgctttcctcttctcctcca 1126
>gb|AC147243.2| Mus musculus BAC clone RP23-444P22 from chromosome 6, complete sequence Length = 181025 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 ctttcctcttctcctccatt 567 |||||||||||||||||||| Sbjct: 131192 ctttcctcttctcctccatt 131173
>gb|AC139940.5| Mus musculus chromosome 15, clone RP23-468K16, complete sequence Length = 212183 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 163853 tcctcttccttttcttcttc 163834 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 163760 tcctcttccttttcttcttc 163741
>gb|AC133950.4| Mus musculus BAC clone RP24-243C16 from chromosome 7, complete sequence Length = 176244 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 tcttccttttcttcttccac 623 |||||||||||||||||||| Sbjct: 161678 tcttccttttcttcttccac 161697
>gb|AC121833.3| Mus musculus BAC clone RP24-69C16 from chromosome 3, complete sequence Length = 224456 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 38187 tcctcttccttttcttcttc 38206
>gb|AC129012.4| Mus musculus BAC clone RP24-545L10 from chromosome 10, complete sequence Length = 143029 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 41874 tcctcttccttttcttcttc 41855
>ref|XM_804721.1| Trypanosoma cruzi strain CL Brener cytoskeleton-associated protein CAP5.5 (Tc00.1047053508555.60) partial mRNA Length = 2421 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 2204 tcctcttccttttcttcttc 2185
>ref|XM_807409.1| Trypanosoma cruzi strain CL Brener glycosyl hydrolase-like protein (Tc00.1047053510283.70) partial mRNA Length = 3168 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 602 cctcttccttttcttcttccacaa 625 ||||||||||||| |||||||||| Sbjct: 628 cctcttccttttcctcttccacaa 605
>gb|AC125175.4| Mus musculus BAC clone RP24-572I8 from chromosome 6, complete sequence Length = 167991 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 ctttcctcttctcctccatt 567 |||||||||||||||||||| Sbjct: 2047 ctttcctcttctcctccatt 2028
>gb|AC121979.3| Mus musculus BAC clone RP24-289L14 from chromosome 9, complete sequence Length = 155274 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 123159 tcctcttccttttcttcttc 123140
>gb|AC122837.4| Mus musculus BAC clone RP23-189N3 from 16, complete sequence Length = 199988 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 133659 tcctcttccttttcttcttc 133678
>ref|XM_883840.1| Candida albicans SC5314 hypothetical protein (CaJ7.0374) partial mRNA Length = 1683 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 tcttccttttcttcttccac 623 |||||||||||||||||||| Sbjct: 1622 tcttccttttcttcttccac 1603
>ref|XM_711860.1| Candida albicans SC5314 protein disulfide isomerase (PDI1) partial mRNA Length = 1683 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 tcttccttttcttcttccac 623 |||||||||||||||||||| Sbjct: 1622 tcttccttttcttcttccac 1603
>gb|AC102567.8| Mus musculus chromosome 9, clone RP23-224F1, complete sequence Length = 198097 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 127973 tcctcttccttttcttcttc 127954
>gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete sequence Length = 151183 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 ctttcctcttctcctccatt 567 |||||||||||||||||||| Sbjct: 119102 ctttcctcttctcctccatt 119121
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 91682 tcctcttccttttcttcttc 91663
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 93170 tcctcttccttttcttcttc 93151
>gb|AC164089.4| Mus musculus BAC clone RP23-70G12 from chromosome 3, complete sequence Length = 223387 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 118600 tcctcttccttttcttcttc 118619
>ref|XM_660364.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.30409) partial mRNA Length = 2958 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 653 tcctcttccttttcttcttc 634
>gb|AC109210.26| Mus musculus chromosome 7, clone RP23-9C7, complete sequence Length = 236592 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 57659 tcctcttccttttcttcttc 57678
>gb|AY710267.1| Banana virus X RNA-dependent RNA polymerase gene, partial cds; and triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and capsid protein genes, complete cds Length = 2917 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 catttcctttcttggtggaa 474 |||||||||||||||||||| Sbjct: 2183 catttcctttcttggtggaa 2164
>gb|BC021462.1| Mus musculus golgi coiled coil 1, mRNA (cDNA clone IMAGE:5054618), complete cds Length = 1363 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 416 ctttctccttcagcaggctt 397
>gb|AC146910.16| Medicago truncatula clone mth2-59i21, complete sequence Length = 109724 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 50091 tcctcttccttttcttcttc 50072
>emb|AL450106.11| Human DNA sequence from clone RP11-280P22 on chromosome 9, complete sequence Length = 49221 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 36636 tcctcttccttttcttcttc 36655
>emb|AL139095.15| Human DNA sequence from clone RP11-69L16 on chromosome 6 Contains the 3' end of the RREB1 gene for ras responsive element binding protein 1, part of a novel gene, the SSR1 gene for signal sequence receptor alpha (translocon-associated protein alpha), the ATP5GP1 pseudogene (ATPsynthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9)), a ribosomal protein S3 pseudogene, the CAGE1 gene for cancer antigen 1, the 5' end of the RIOK1 gene for RIO kinase 1 (yeast) and three CpG islands, complete sequence Length = 167206 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 604 tcttccttttcttcttccacaact 627 ||||| |||||||||||||||||| Sbjct: 130475 tcttcattttcttcttccacaact 130498
>gb|AC119618.4| Homo sapiens X BAC RP11-430A19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 76836 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 613 tcttcttccacaactgcagc 632 |||||||||||||||||||| Sbjct: 29745 tcttcttccacaactgcagc 29764
>gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, complete sequence Length = 153860 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 119476 tcctcttccttttcttcttc 119457
>ref|XM_792752.1| PREDICTED: Strongylocentrotus purpuratus similar to deleted in malignant brain tumors 1 isoform b precursor (LOC593270), mRNA Length = 894 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 ttcttcaaagcatcaagtgc 548 |||||||||||||||||||| Sbjct: 334 ttcttcaaagcatcaagtgc 353
>ref|XM_780125.1| PREDICTED: Strongylocentrotus purpuratus similar to translocation protein 1 (LOC580046), partial mRNA Length = 495 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 tcagcattctctttcttctt 413 |||||||||||||||||||| Sbjct: 47 tcagcattctctttcttctt 28
>emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 7 Length = 201471 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 343 ggcttcaggaactcgttgatgctcacag 370 |||||||| ||||| ||||||||||||| Sbjct: 35010 ggcttcagaaactcattgatgctcacag 34983 Score = 40.1 bits (20), Expect = 8.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 554 tcttctcctccattactttctcaaattcatcaagagtcat 593 |||||||||| | || ||||||| | |||||||||||||| Sbjct: 34650 tcttctcctcgagtattttctcatactcatcaagagtcat 34611
>emb|CR859994.1| Pongo pygmaeus mRNA; cDNA DKFZp459H158 (from clone DKFZp459H158) Length = 4144 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 561 ctttctccttcagcaggctt 542
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 47068 tcctcttccttttcttcttc 47087
>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1062590 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 608602 tcctcttccttttcttcttc 608583
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ccccgcggcccctgccgcca 306 |||||||||||||||||||| Sbjct: 114438 ccccgcggcccctgccgcca 114419
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 cctcttccttttcttcttcc 621 |||||||||||||||||||| Sbjct: 139628 cctcttccttttcttcttcc 139609
>emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 45 Length = 199548 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 343 ggcttcaggaactcgttgatgctcacag 370 |||||||| ||||| ||||||||||||| Sbjct: 20839 ggcttcagaaactcattgatgctcacag 20812 Score = 40.1 bits (20), Expect = 8.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 554 tcttctcctccattactttctcaaattcatcaagagtcat 593 |||||||||| | || ||||||| | |||||||||||||| Sbjct: 20479 tcttctcctcgagtattttctcatactcatcaagagtcat 20440
>gb|AC164623.4| Mus musculus 10 BAC RP24-401L24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172657 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 tccattactttctcaaattc 581 |||||||||||||||||||| Sbjct: 164539 tccattactttctcaaattc 164520
>emb|AL645596.7| Mouse DNA sequence from clone RP23-301E19 on chromosome 11 Contains the Ccl11 and Ccl12 genes for chemokine (C-C motif) ligand 11 and 12, complete sequence Length = 63924 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 3071 tcctcttccttttcttcttc 3090
>gb|BC014100.2| Homo sapiens GRIP and coiled-coil domain containing 1, mRNA (cDNA clone MGC:20706 IMAGE:2988591), complete cds Length = 4153 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 566 ctttctccttcagcaggctt 547
>emb|AL833358.1|HSM804671 Homo sapiens mRNA; cDNA DKFZp667D0214 (from clone DKFZp667D0214) Length = 2447 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cccgcggcccctgccgccac 307 |||||||||||||||||||| Sbjct: 64 cccgcggcccctgccgccac 45
>dbj|BS000599.1| Pan troglodytes chromosome Y clone:PTB-225K16, complete sequences Length = 105000 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 18341 tcctcttccttttcttcttc 18360
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 22408268 tcctcttccttttcttcttc 22408249
>gb|AC148241.21| Medicago truncatula clone mth2-14m21, complete sequence Length = 119208 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 568 actttctcaaattcatcaag 587 |||||||||||||||||||| Sbjct: 2591 actttctcaaattcatcaag 2572
>dbj|AK123129.1| Homo sapiens cDNA FLJ41134 fis, clone BRACE2027970 Length = 2619 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cccgcggcccctgccgccac 307 |||||||||||||||||||| Sbjct: 2068 cccgcggcccctgccgccac 2049
>dbj|AK092878.1| Homo sapiens cDNA FLJ35559 fis, clone SPLEN2005009 Length = 3587 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 22 ctttctccttcagcaggctt 3
>gb|AF110227.1| Arabidopsis thaliana nuclear RNA binding protein (RGGA) gene, complete cds Length = 1688 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 343 ggcttcaggaactcgttgatgctcacag 370 |||||||| ||||| ||||||||||||| Sbjct: 1528 ggcttcagaaactcattgatgctcacag 1501 Score = 40.1 bits (20), Expect = 8.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 554 tcttctcctccattactttctcaaattcatcaagagtcat 593 |||||||||| | || ||||||| | |||||||||||||| Sbjct: 1168 tcttctcctcgagtattttctcatactcatcaagagtcat 1129
>gb|AC021915.11| Homo sapiens chromosome 8, clone RP11-26M5, complete sequence Length = 183101 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 acctcatcatttcctttctt 467 |||||||||||||||||||| Sbjct: 83656 acctcatcatttcctttctt 83637
>gb|AC104967.4| Homo sapiens chromosome 8, clone CTD-2306F16, complete sequence Length = 144098 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 44718 tcctcttccttttcttcttc 44737
>gb|AC091769.6| Homo sapiens chromosome 10 clone RP11-205A8, complete sequence Length = 173450 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cccgcggcccctgccgccac 307 |||||||||||||||||||| Sbjct: 156653 cccgcggcccctgccgccac 156634
>gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 219861 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 39528 tcctcttccttttcttcttc 39509
>gb|AC026182.4| Homo sapiens chromosome 3 clone RP11-279B12 map 3p, complete sequence Length = 167179 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 catcaagagtcatctcatta 600 |||||||||||||||||||| Sbjct: 23090 catcaagagtcatctcatta 23109
>gb|AC012294.15| Mus musculus chromosome 11, clone RP23-328G11, complete sequence Length = 222121 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 89752 tcctcttccttttcttcttc 89733
>gb|AC091785.5| Genomic sequence for Mus musculus, clone RP23-349P1, complete sequence Length = 178271 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 ctttcctcttctcctccatt 567 |||||||||||||||||||| Sbjct: 123829 ctttcctcttctcctccatt 123848
>gb|AC104806.3| Homo sapiens BAC clone RP11-584P21 from 4, complete sequence Length = 147777 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 4605 tcctcttccttttcttcttc 4624
>ref|NM_001002762.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 12 (DNAJB12), transcript variant 1, mRNA Length = 4342 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cccgcggcccctgccgccac 307 |||||||||||||||||||| Sbjct: 1957 cccgcggcccctgccgccac 1938
>gb|AC140227.7| Mus musculus BAC clone RP24-487N2 from chromosome 8, complete sequence Length = 188262 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 cctcttccttttcttcttcc 621 |||||||||||||||||||| Sbjct: 144379 cctcttccttttcttcttcc 144360
>ref|NM_024523.5| Homo sapiens GRIP and coiled-coil domain containing 1 (GCC1), mRNA Length = 4152 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 566 ctttctccttcagcaggctt 547
>ref|XM_691401.1| PREDICTED: Danio rerio hypothetical protein LOC402878 (LOC402878), mRNA Length = 1935 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 tgctttcctcttctcctcca 565 |||||||||||||||||||| Sbjct: 1140 tgctttcctcttctcctcca 1121
>gb|AC155322.5| Mus musculus 10 BAC RP24-149J3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 187016 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 tccattactttctcaaattc 581 |||||||||||||||||||| Sbjct: 71078 tccattactttctcaaattc 71059
>ref|XM_627144.1| Cryptosporidium parvum Iowa II Ser/Thr protein kinase (cgd8_2430), partial mRNA Length = 1980 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 179 tcctcttccttttcttcttc 160
>gb|AC160759.4| Mus musculus BAC clone RP23-333K15 from chromosome 16, complete sequence Length = 190127 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 44611 tcctcttccttttcttcttc 44630
>gb|AC151987.4| Mus musculus BAC clone RP23-356C20 from chromosome 17, complete sequence Length = 245262 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 104692 tcctcttccttttcttcttc 104673
>gb|AC154902.2| Mus musculus BAC clone RP24-85I19 from chromosome 7, complete sequence Length = 213932 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ttccttttcttcttccacaa 625 |||||||||||||||||||| Sbjct: 136303 ttccttttcttcttccacaa 136284
>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete sequence Length = 192299 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 125159 tcctcttccttttcttcttc 125178
>dbj|AK016531.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932417P04 product:golgi coiled coil 1, full insert sequence Length = 2860 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 505 ctttctccttcagcaggctt 486
>dbj|AK032253.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430511O04 product:hypothetical GRIP domain containing protein, full insert sequence Length = 4051 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 556 ctttctccttcagcaggctt 537
>gb|AC044790.4|AC044790 Homo sapiens chromosome 11 clone RP11-141J21 containing NRXN2 (NRXN2) gene, partial cds; and RST and OAT4 genes, complete cds, complete sequence Length = 170114 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 55689 tcctcttccttttcttcttc 55708
>gb|AC000134.14| Homo sapiens Chromosome 11q13 BAC Clone 137c7, complete sequence Length = 203300 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 13900 tcctcttccttttcttcttc 13881
>gb|AC158634.5| Mus musculus 10 BAC RP23-424C16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 169826 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 tccattactttctcaaattc 581 |||||||||||||||||||| Sbjct: 76869 tccattactttctcaaattc 76850
>emb|BX934008.2| Gallus gallus finished cDNA, clone ChEST58k10 Length = 1199 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 cctcttccttttcttcttcc 621 |||||||||||||||||||| Sbjct: 616 cctcttccttttcttcttcc 597
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 cctcttccttttcttcttcc 621 |||||||||||||||||||| Sbjct: 25413070 cctcttccttttcttcttcc 25413051
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 ctcattatcctcttcctttt 613 |||||||||||||||||||| Sbjct: 12361336 ctcattatcctcttcctttt 12361317
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 539 catcaagtgctttcctcttctcct 562 |||||||| ||||||||||||||| Sbjct: 5218458 catcaagtcctttcctcttctcct 5218481
>gb|AC114547.12| Mus musculus chromosome 8, clone RP24-68M15, complete sequence Length = 182611 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 602 cctcttccttttcttcttcc 621 |||||||||||||||||||| Sbjct: 42991 cctcttccttttcttcttcc 43010
>gb|AC092138.4| Homo sapiens chromosome 16 clone RP11-351A20, complete sequence Length = 189505 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 581 catcaagagtcatctcatta 600 |||||||||||||||||||| Sbjct: 70977 catcaagagtcatctcatta 70958
>gb|AC069019.8|AC069019 Mus musculus BAC RP23-455N13 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 196175 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 189992 tcctcttccttttcttcttc 189973
>gb|U51095.1|HSU51095 Human homeobox protein Cdx1 mRNA, complete cds Length = 1699 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccccgcggcccctgccgcca 306 |||||||||||||||||||| Sbjct: 318 ccccgcggcccctgccgcca 337
>gb|AC108718.13| Homo sapiens 3 BAC RP11-246A10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 66513 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 20585 tcctcttccttttcttcttc 20604
>gb|AC012065.8| Homo sapiens BAC clone RP11-130L8 from 2, complete sequence Length = 206021 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 ctcttccttttcttcttcca 622 |||||||||||||||||||| Sbjct: 9036 ctcttccttttcttcttcca 9055
>gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complete sequence Length = 175345 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 tctctttcttcttcaaagcc 420 |||||||||||||||||||| Sbjct: 66973 tctctttcttcttcaaagcc 66954
>gb|AF525417.1| Homo sapiens Golgi coiled coil protein 1 mRNA, complete cds Length = 2522 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 341 ctttctccttcagcaggctt 322
>gb|AY087413.1| Arabidopsis thaliana clone 35156 mRNA, complete sequence Length = 1399 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 gcaggcttcaggaactcgttgatgctca 367 ||||| ||||| |||||||||||||||| Sbjct: 1014 gcaggtttcagaaactcgttgatgctca 987
>ref|XM_575413.1| PREDICTED: Rattus norvegicus similar to GRIP and coiled-coil domain-containing protein 1 (Golgi coiled coil protein 1) (LOC500058), mRNA Length = 3652 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttctccttcagcaggctt 347 |||||||||||||||||||| Sbjct: 154 ctttctccttcagcaggctt 135
>gb|AF296837.1|F7K24 Arabidopsis thaliana BAC F7K24 Length = 103024 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 74122 tcctcttccttttcttcttc 74103
>gb|AF296836.1|F28I16 Arabidopsis thaliana BAC F28I16 Length = 84334 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 600 atcctcttccttttcttctt 619 |||||||||||||||||||| Sbjct: 50860 atcctcttccttttcttctt 50879
>gb|AF296829.1|F3D18 Arabidopsis thaliana BAC F3D18 Length = 88126 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 36636 tcctcttccttttcttcttc 36617
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 598 ttatcctcttccttttcttcttcc 621 ||||||||||||| |||||||||| Sbjct: 92576 ttatcctcttcctcttcttcttcc 92553
>gb|AC127286.3| Mus musculus BAC clone RP23-340I4 from chromosome unknown, complete sequence Length = 190953 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tcctcttccttttcttcttc 620 |||||||||||||||||||| Sbjct: 92831 tcctcttccttttcttcttc 92812 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,238,892 Number of Sequences: 3902068 Number of extensions: 7238892 Number of successful extensions: 180958 Number of sequences better than 10.0: 307 Number of HSP's better than 10.0 without gapping: 308 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 179561 Number of HSP's gapped (non-prelim): 1379 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
