ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19d03 |
|---|---|
| Clone Library Name | barley_pub |
>AGR2_MOUSE (O88312) Anterior gradient protein 2 homolog precursor (Secreted| cement gland protein XAG-2 homolog) (AG-2 protein) (mAG-2) (Gob-4 protein) Length = 175 Score = 34.3 bits (77), Expect = 0.38 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Frame = +1 Query: 148 LWWQVNYSNTNTHKTSTLKL-VSGHLQHCRFSQATVHVMAEERKVRHVSEE---LWQVHP 315 +W Q KTS L V HL C SQA V AE ++++ ++E+ L V+ Sbjct: 53 IWTQTYEEALYRSKTSNRPLMVIHHLDECPHSQALKKVFAEHKEIQKLAEQFVLLNLVYE 112 Query: 316 EVCKRLLP---HLPRKPKVEPLLFLQPDL 393 K L P ++PR V+P L ++ D+ Sbjct: 113 TTDKHLSPDGQYVPRIVFVDPSLTVRADI 141
>AGR2_PONPY (Q5R7P1) Anterior gradient protein 2 homolog precursor| Length = 175 Score = 33.9 bits (76), Expect = 0.50 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Frame = +1 Query: 148 LWWQVNYSNTNTHKTSTLKL-VSGHLQHCRFSQATVHVMAEERKVRHVSEE---LWQVHP 315 +W Q KTS L + HL C SQA V AE ++++ ++E+ L V+ Sbjct: 53 IWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLVYE 112 Query: 316 EVCKRLLP---HLPRKPKVEPLLFLQPDL 393 K L P ++PR V+P L ++ D+ Sbjct: 113 TTDKHLSPDGQYVPRIMFVDPSLTVRADI 141
>AGR2_HUMAN (O95994) Anterior gradient protein 2 homolog precursor (Secreted| cement gland protein XAG-2 homolog) (AG-2 protein) (hAG-2) (HPC8) Length = 175 Score = 33.9 bits (76), Expect = 0.50 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Frame = +1 Query: 148 LWWQVNYSNTNTHKTSTLKL-VSGHLQHCRFSQATVHVMAEERKVRHVSEE---LWQVHP 315 +W Q KTS L + HL C SQA V AE ++++ ++E+ L V+ Sbjct: 53 IWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLVYE 112 Query: 316 EVCKRLLP---HLPRKPKVEPLLFLQPDL 393 K L P ++PR V+P L ++ D+ Sbjct: 113 TTDKHLSPDGQYVPRIMFVDPSLTVRADI 141
>PROA_THICR (Q31IE5) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 33.5 bits (75), Expect = 0.65 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -3 Query: 618 EVISNIVLLQEEEVSLRRRCEETRRDLDRKRAQFEDWHRRY 496 E++ +V L EE+ R CE+TR D K A EDW Y Sbjct: 273 EILPGLVELYEEKGVELRGCEQTRAICDMKAATEEDWATEY 313
>AGR3_HUMAN (Q8TD06) Anterior gradient protein 3 homolog precursor (AG-3| protein) (hAG-3) (AG3) (Breast cancer membrane protein 11) Length = 166 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Frame = +1 Query: 205 LVSGHLQHCRFSQATVHVMAEERKVRHVSEE----LWQVHPEVCKRLLP---HLPRKPKV 363 +V HL+ C++SQA V A+ +++ +++ L +H K L P ++PR V Sbjct: 63 MVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFV 122 Query: 364 EPLLFLQPDL 393 +P L ++ D+ Sbjct: 123 DPSLTVRADI 132
>SWR1_SCHPO (O13682) Helicase swr1 (EC 3.6.1.-)| Length = 1288 Score = 31.2 bits (69), Expect = 3.2 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -3 Query: 519 FEDWHRRYTERKASQGEEANPEAANTSSLDH 427 F+DW + +R +G++ NPEA NT + H Sbjct: 639 FQDWFSKPMDRLIEEGQDMNPEAMNTVAKLH 669
>AFAD_HUMAN (P55196) Afadin (AF-6 protein)| Length = 1816 Score = 30.8 bits (68), Expect = 4.2 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = -3 Query: 591 QEEEVSLRRRCEE--TRRDLDRKRAQFEDWHRRYTERKASQGEEA 463 QEEE RRR EE T+RD + KR Q E ++ R + Q +EA Sbjct: 1613 QEEE---RRRQEEERTKRDAEEKRRQEEGYYSRLEAERRRQHDEA 1654
>Y2581_PHOLL (Q7N3Y1) UPF0283 membrane protein plu2581| Length = 354 Score = 30.4 bits (67), Expect = 5.5 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = +2 Query: 212 LGICSTADFLKLLYMSWQKNEKSVMFLKSSGRCIRRFASVFSL 340 LG+ + A F++ +Y SWQ+ + S + + ++G I FA + SL Sbjct: 79 LGLSAVAQFVQWIYQSWQQQDWSALGVAAAGSMI-VFAGIGSL 120
>MRCKA_RAT (O54874) Serine/threonine-protein kinase MRCK alpha (EC 2.7.11.1)| (CDC42-binding protein kinase alpha) (Myotonic dystrophy kinase-related CDC42-binding kinase alpha) (Myotonic dystrophy protein kinase-like alpha) (MRCK alpha) Length = 1732 Score = 30.0 bits (66), Expect = 7.2 Identities = 24/89 (26%), Positives = 41/89 (46%) Frame = -3 Query: 696 ICYMPGTTKLERLPVELAKTAIKSFTEVISNIVLLQEEEVSLRRRCEETRRDLDRKRAQF 517 I Y +K E + K K + + L +E + L+ + E+TRR+ +R +F Sbjct: 698 IFYEEEISKREGIHASEIKNLKKELHDSEGQQLALNKEIMVLKDKLEKTRRESQSEREEF 757 Query: 516 EDWHRRYTERKASQGEEANPEAANTSSLD 430 E+ ++ ER+ E N + TS LD Sbjct: 758 ENEFKQQYEREKVLLTEENKKL--TSELD 784
>MRCKA_HUMAN (Q5VT25) Serine/threonine-protein kinase MRCK alpha (EC 2.7.11.1)| (CDC42-binding protein kinase alpha) (Myotonic dystrophy kinase-related CDC42-binding kinase alpha) (Myotonic dystrophy protein kinase-like alpha) (MRCK alpha) (DMPK-like alpha Length = 1732 Score = 29.6 bits (65), Expect = 9.4 Identities = 24/89 (26%), Positives = 40/89 (44%) Frame = -3 Query: 696 ICYMPGTTKLERLPVELAKTAIKSFTEVISNIVLLQEEEVSLRRRCEETRRDLDRKRAQF 517 I Y +K E + K K + + L +E + L+ + E+TRR+ +R +F Sbjct: 698 IFYEEELSKREGIHANEIKNLKKELHDSEGQQLALNKEIMILKDKLEKTRRESQSEREEF 757 Query: 516 EDWHRRYTERKASQGEEANPEAANTSSLD 430 E ++ ER+ E N + TS LD Sbjct: 758 ESEFKQQYEREKVLLTEENKKL--TSELD 784
>TPH1_CHICK (P70080) Tryptophan 5-hydroxylase 1 (EC 1.14.16.4) (Tryptophan| 5-monooxygenase 1) Length = 445 Score = 29.6 bits (65), Expect = 9.4 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +1 Query: 196 TLKLVSGHLQHCRF-SQATVHVMAEERKVRHVSEELWQVHPEVCKRLLPHLP 348 T++ V+G+L F + V + VRH S+ L+ P+ C LL H+P Sbjct: 229 TIRPVAGYLSPRDFLAGLAFRVFHCTQYVRHSSDPLYTPEPDTCHELLGHVP 280
>PH4H_DROME (P17276) Protein henna [Includes: Phenylalanine-4-hydroxylase (EC| 1.14.16.1) (PAH) (Phe-4-monooxygenase); Tryptophan 5-monooxygenase (EC 1.14.16.4) (TRH) (Tryptophan 5-hydroxylase)] Length = 452 Score = 29.6 bits (65), Expect = 9.4 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +1 Query: 196 TLKLVSGHLQHCRF-SQATVHVMAEERKVRHVSEELWQVHPEVCKRLLPHLP 348 TL+ V+G L F + V + +RH S+ ++ P+VC L+ H+P Sbjct: 240 TLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDVCHELMGHVP 291
>MYO5A_CHICK (Q02440) Myosin-5A (Myosin Va) (Dilute myosin heavy chain,| non-muscle) (Myosin heavy chain p190) (Myosin-V) Length = 1829 Score = 29.6 bits (65), Expect = 9.4 Identities = 21/85 (24%), Positives = 37/85 (43%) Frame = -3 Query: 675 TKLERLPVELAKTAIKSFTEVISNIVLLQEEEVSLRRRCEETRRDLDRKRAQFEDWHRRY 496 T+ E LP+ + + + K +S + LQ+ L + + + +LDRK Q + Sbjct: 1132 TEAEDLPLRMEEPSEKKAPLDMSLFLKLQKRVTELEQEKQSLQDELDRKEEQALRAKAKE 1191 Query: 495 TERKASQGEEANPEAANTSSLDHVN 421 ER +G E E+ L+ N Sbjct: 1192 EERPPIRGAELEYESLKRQELESEN 1216
>US01_HCMVA (P09714) Hypothetical protein HQLF3| Length = 156 Score = 29.6 bits (65), Expect = 9.4 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = -3 Query: 546 RDLDRKRAQFEDWHRRYTERKASQGEEANPEAANTSS 436 R L KR +F W RR+T+R S+ E A+ +A N S+ Sbjct: 120 RRLRVKRPKFPSWARRWTQRHDSE-ERASQQAENDST 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,315,329 Number of Sequences: 219361 Number of extensions: 1680563 Number of successful extensions: 5469 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5225 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5468 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
