ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18o01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 39 0.017
2RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC... 35 0.19
3SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor 33 0.72
4KPEL_DROME (Q05652) Probable serine/threonine-protein kinase pel... 31 3.6
5SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor 31 3.6
6BSN_RAT (O88778) Bassoon protein 30 7.9
7MSRAB_VIBCH (Q9KLX6) Peptide methionine sulfoxide reductase msrA... 30 7.9

>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = -2

Query: 546 IKVGLLCTASDPLDRPAMGDVVFMLEG 466
           I+V LLCT S P++RP M +VV MLEG
Sbjct: 539 IQVALLCTQSSPMERPKMSEVVRMLEG 565



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>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)|
          Length = 999

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = -2

Query: 564  EEFLLGIKVGLLCTASDPLDRPAMGDVVFMLE 469
            EE    I +GLLCT+  PL+RP+M  VV ML+
Sbjct: 934  EEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQ 965



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>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor|
          Length = 263

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +2

Query: 101 CCGVNPTCAPTKLSDIAMAGASCQAPPTWPSDDLPLTTRRD*KRPPTATSPPT 259
           C    PTCAPT  +      A    PP  P  D P TT+R  ++  T  +  T
Sbjct: 36  CQTTVPTCAPTTTTTTTTTCAPPTRPPPPPCTDAPTTTKRTTEKSTTRRTTTT 88



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>KPEL_DROME (Q05652) Probable serine/threonine-protein kinase pelle (EC|
           2.7.11.1)
          Length = 501

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 555 LLGIKVGLLCTASDPLDRPAMGDVVFMLE 469
           +  I+ GL CTA DP DRP+M  V+   E
Sbjct: 468 MCAIEAGLHCTALDPQDRPSMNAVLKRFE 496



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>SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor|
          Length = 217

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 23/74 (31%), Positives = 31/74 (41%)
 Frame = +2

Query: 26  STEQATNTTPPRWQGDTTVS*ISSRCCGVNPTCAPTKLSDIAMAGASCQAPPTWPSDDLP 205
           ST   T TT       TT +  ++R     PTC  T  +       + +APPT P+    
Sbjct: 46  STSTTTTTTTT-----TTTTTTTTRAPPTKPTCKSTSTTT-----TTTRAPPTKPTCKST 95

Query: 206 LTTRRD*KRPPTAT 247
            TT    + PPT T
Sbjct: 96  STTTTTTRAPPTTT 109



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>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 113  NPTCAPTKLSDIAMAGASCQAPPTWPSDDLP 205
            +PT +P+KL   A A  S Q P   PS D+P
Sbjct: 1480 SPTFSPSKLGPRATAEFSTQTPSLTPSSDIP 1510



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>MSRAB_VIBCH (Q9KLX6) Peptide methionine sulfoxide reductase msrA/msrB (EC|
           1.8.4.6) [Includes: Peptide methionine sulfoxide
           reductase msrA (Protein-methionine-S-oxide reductase)
           (Peptide Met(O) reductase); Peptide methionine sulfoxide
           reductase msrB]
          Length = 378

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 228 F*SRLVVRGRSSDGHVGGAWHDAPA-MAMSLSLVGAHVGFTPQQRLLIQ 85
           F +R  VR R +D H+G  ++D PA   +   +  A + F P+Q +  Q
Sbjct: 320 FYTRTEVRSRFADSHLGHVFNDGPAPTGLRYCMNSAAMRFIPKQEMAAQ 368


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,520,975
Number of Sequences: 219361
Number of extensions: 1365026
Number of successful extensions: 4816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4748
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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