>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 352 KQREDNREQAEQGRRPRRAAHRSP 281
           K+ +DNRE+ ++ R PRR   RSP
Sbjct: 156 KEDKDNREKRDRSRSPRRRKSRSP 179

>FILA_MOUSE (P11088) Filaggrin (Fragment)|
          Length = 336

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 394 ERASELQGRSCHGHKQREDNREQAEQGRRPRRAAHRSPG*DAFRSR 257
           +R  + Q +  H H+Q E    Q +   R  + AH+  G D+ R R
Sbjct: 175 QRGHQHQHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARPR 220

>CD2L2_HUMAN (Q9UQ88) PITSLRE serine/threonine-protein kinase CDC2L2 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 2) (CDK11)
          Length = 780

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 394 ERASELQGRSCHGHKQREDNREQAEQGRRPRRAAHR 287
           +R  +L+ +     K RE  +EQ EQ  R RRA  R
Sbjct: 154 DRLEQLERKRERERKMREQQKEQREQKERERRAEER 189

>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral|
            proteinase D) (CANP D) (Small optic lobes protein)
          Length = 1594

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 418  VWYECGGGERASELQGRSCHGHKQREDNREQAEQGRRPRRA 296
            +W +         L G SC G   + D  E  ++G RPR A
Sbjct: 1206 IWAQLLSSRCVRFLMGASCGGGNMKVDEEEYQQKGLRPRHA 1246

>CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC2L1 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 1) (CLK-1) (CDK11) (p58 CLK-1)
          Length = 795

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 394 ERASELQGRSCHGHKQREDNREQAEQGRRPRRAAHR 287
           +R  +L+ +     K RE  +EQ EQ  R RRA  R
Sbjct: 166 DRLEQLERKRERERKMREQQKEQREQKERERRAEER 201

>DCR1_SCHPO (Q09884) Cell cycle control protein dcr1 (EC 3.6.1.-)|
           (ATP-dependent helicase dcr1) (RNA interference pathway
           protein dcr1)
          Length = 1374

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = -1

Query: 426 LRKYGMNVVVANELANYKDVVVMVTSSGKTTVSRRSKEDDLEEQLIGLLVKMHSDHAKQS 247
           LRKY  +V   N  +    ++VM T +GKT ++ +  +  LEEQ+  L+ + + +H K S
Sbjct: 12  LRKYQQDVY--NIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQI--LIQESNLEHKKIS 67

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 352 KQREDNREQAEQGRRPRRAAHRSP 281
           +++E +RE+ E+ R PRR   RSP
Sbjct: 157 EEKESSREKRERSRSPRRRKSRSP 180

>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = -3

Query: 376 QGRSCHGHKQREDNREQAEQGRRPRRAAHRSPG*DAFRSR*AVQSRPGNLSCC 218
           Q R+C      ED    A+  R     AHR     A  +  AVQ RPG    C
Sbjct: 124 QRRTCQATVPHEDTFSAADLTRVGESTAHREGAESAVATVEAVQGRPGGTWPC 176

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 352 KQREDNREQAEQGRRPRRAAHRSP 281
           +++E +RE+ E+ R PRR   RSP
Sbjct: 157 EEKESSREKRERSRSPRRRKSRSP 180

>HLYD_PASHA (P16534) Leukotoxin secretion protein D|
          Length = 478

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 405 VVVANELANYKDVVVMVTSSGKTTVSRRSKE 313
           +VVA  LA+   V ++ T+ GK T S RSKE
Sbjct: 68  LVVAIVLASVSKVEIVATAPGKLTFSGRSKE 98

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 352 KQREDNREQAEQGRRPRRAAHRSP 281
           +++E +RE+ E+ R PRR   RSP
Sbjct: 157 EEKESSREKRERSRSPRRRKSRSP 180

>CD2L1_MOUSE (P24788) PITSLRE serine/threonine-protein kinase CDC2L1 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 1)
          Length = 784

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 394 ERASELQGRSCHGHKQREDNREQAEQGRRPRRAAHR 287
           +R  +L+ +     K RE  +EQ EQ  R RRA  R
Sbjct: 166 DRLEQLERKRERERKLREQQKEQREQKERERRAEER 201


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,891,149
Number of Sequences: 219361
Number of extensions: 975664
Number of successful extensions: 2721
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2721
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)