| Clone Name | rbags19c14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111313.1| Zea mays CL35554_1 mRNA sequence Length = 608 Score = 71.9 bits (36), Expect = 3e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 394 gttcttggcagaggaatctgctgctgaagatggagaatccctcctctcatggttgttctt 453 ||||||||||||| |||||||||||||||||||||||| | | |||||||| ||||||| Sbjct: 307 gttcttggcagagaaatctgctgctgaagatggagaatttcccttctcatggctgttctt 366
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 69.9 bits (35), Expect = 1e-08 Identities = 92/111 (82%) Strand = Plus / Minus Query: 394 gttcttggcagaggaatctgctgctgaagatggagaatccctcctctcatggttgttctt 453 ||||||||||| ||| ||||||| | ||||||||||| |||||||||||| ||||||| Sbjct: 18066129 gttcttggcagcggagtctgctgtcaaggatggagaatcactcctctcatggctgttctt 18066070 Query: 454 ctctcggagaaaattcacagggttcgcatacgaacttgtgcatggccacct 504 ||||| | |||||| || |||| ||| | || ||||| ||||||||||| Sbjct: 18066069 atctcgaaaaaaatttactgggtctgcaaatgatcttgtacatggccacct 18066019 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 570 ccttattagagaagtatttggccttgatgcgtgctgcaagttcagcttggtatctgttta 629 ||||||||||||||||||||||||| | || ||||||||| |||||| ||| |||||| Sbjct: 18058799 ccttattagagaagtatttggccttcaaacgggctgcaagtatagcttgatatttgttta 18058740 Query: 630 ccttctgttc 639 ||||||||| Sbjct: 18058739 tcttctgttc 18058730
>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08 Length = 155316 Score = 69.9 bits (35), Expect = 1e-08 Identities = 92/111 (82%) Strand = Plus / Minus Query: 394 gttcttggcagaggaatctgctgctgaagatggagaatccctcctctcatggttgttctt 453 ||||||||||| ||| ||||||| | ||||||||||| |||||||||||| ||||||| Sbjct: 59251 gttcttggcagcggagtctgctgtcaaggatggagaatcactcctctcatggctgttctt 59192 Query: 454 ctctcggagaaaattcacagggttcgcatacgaacttgtgcatggccacct 504 ||||| | |||||| || |||| ||| | || ||||| ||||||||||| Sbjct: 59191 atctcgaaaaaaatttactgggtctgcaaatgatcttgtacatggccacct 59141 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 570 ccttattagagaagtatttggccttgatgcgtgctgcaagttcagcttggtatctgttta 629 ||||||||||||||||||||||||| | || ||||||||| |||||| ||| |||||| Sbjct: 51921 ccttattagagaagtatttggccttcaaacgggctgcaagtatagcttgatatttgttta 51862 Query: 630 ccttctgttc 639 ||||||||| Sbjct: 51861 tcttctgttc 51852
>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1509_C06 Length = 113436 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 570 ccttattagagaagtatttggccttgatgcgtgctgcaagttcagcttggtatctgttta 629 ||||||||||||||||||||||||| | || ||||||||| |||||| ||| |||||| Sbjct: 110453 ccttattagagaagtatttggccttcaaacgggctgcaagtatagcttgatatttgttta 110394 Query: 630 ccttctgttc 639 ||||||||| Sbjct: 110393 tcttctgttc 110384
>gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, complete sequence Length = 175313 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 ggtgttagattgttttctgttg 338 |||||||||||||||||||||| Sbjct: 3471 ggtgttagattgttttctgttg 3450
>gb|AC165316.4| Mus musculus chromosome 5, clone RP23-168G13, complete sequence Length = 205237 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 ggtgttagattgttttctgttg 338 |||||||||||||||||||||| Sbjct: 85262 ggtgttagattgttttctgttg 85241
>ref|XM_483057.1| Oryza sativa (japonica cultivar-group), mRNA Length = 780 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 581 aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 640 |||||||||||||| | || |||||||| |||| || ||| |||| ||||||| |||| Sbjct: 265 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 206 Query: 641 tgctc 645 ||||| Sbjct: 205 tgctc 201
>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence Length = 168677 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 aaattattttaaagaaaaaga 80 ||||||||||||||||||||| Sbjct: 127471 aaattattttaaagaaaaaga 127451
>gb|AC137853.21| Mus musculus chromosome 19, clone RP24-276L14, complete sequence Length = 173430 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 aaattattttaaagaaaaaga 80 ||||||||||||||||||||| Sbjct: 149020 aaattattttaaagaaaaaga 149040
>gb|AC117677.9| Mus musculus chromosome 7, clone RP23-421G2, complete sequence Length = 249789 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 ggacggatttttatttcatga 212 ||||||||||||||||||||| Sbjct: 120871 ggacggatttttatttcatga 120851
>ref|XM_817439.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.4860) partial mRNA Length = 3207 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 446 ttgttcttctctcggagaaaattca 470 ||||||| ||||||||||||||||| Sbjct: 1022 ttgttctcctctcggagaaaattca 998
>gb|AC127365.4| Mus musculus BAC clone RP23-8K10 from 3, complete sequence Length = 191217 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 ttattttaaagaaaaagataa 83 ||||||||||||||||||||| Sbjct: 139063 ttattttaaagaaaaagataa 139083
>gb|AC107806.10| Mus musculus chromosome 3, clone RP23-55C1, complete sequence Length = 214411 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ttattttaaagaaaaagataa 83 ||||||||||||||||||||| Sbjct: 138957 ttattttaaagaaaaagataa 138937
>emb|AL713866.4| Human DNA sequence from clone RP11-309H21 on chromosome 1 Contains a processed pseudogene similar to heterogeneous nuclear ribonucleoprotein A1 (HNRPA1), complete sequence Length = 142390 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 gcaaattattttaaagaaaaa 78 ||||||||||||||||||||| Sbjct: 104617 gcaaattattttaaagaaaaa 104637
>emb|AL358612.9| Human DNA sequence from clone RP11-435M3 on chromosome 10 Contains the 5' end of the MYO3A gene for myosin IIIA, a novel gene and a CpG island, complete sequence Length = 174021 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 537 ttacttcttcaaagatttttc 557 ||||||||||||||||||||| Sbjct: 79425 ttacttcttcaaagatttttc 79445
>emb|AL954384.11| Zebrafish DNA sequence from clone CH211-146L13 in linkage group 6, complete sequence Length = 162560 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ataacttgcatacttcaggtt 232 ||||||||||||||||||||| Sbjct: 30906 ataacttgcatacttcaggtt 30886
>gb|AC164000.2| Mus musculus chromosome 7, clone RP23-157G7, complete sequence Length = 206022 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ggacggatttttatttcatga 212 ||||||||||||||||||||| Sbjct: 49223 ggacggatttttatttcatga 49243
>gb|AC055120.5| Homo sapiens BAC clone RP11-336N6 from 4, complete sequence Length = 178524 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 aaattattttaaagaaaaaga 80 ||||||||||||||||||||| Sbjct: 54021 aaattattttaaagaaaaaga 54001
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 581 aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 640 |||||||||||||| | || |||||||| |||| || ||| |||| ||||||| |||| Sbjct: 24073841 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 24073782 Query: 641 tgctc 645 ||||| Sbjct: 24073781 tgctc 24073777
>gb|AC154517.2| Mus musculus BAC clone RP24-85L11 from chromosome 12, complete sequence Length = 167631 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 gcttcagctaccacagatgaa 388 ||||||||||||||||||||| Sbjct: 106229 gcttcagctaccacagatgaa 106249
>gb|AC117471.6| Homo sapiens 3 BAC RP11-558J4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 82165 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 aattattttaaagaaaaagat 81 ||||||||||||||||||||| Sbjct: 73806 aattattttaaagaaaaagat 73786
>dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0481F05 Length = 139739 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 581 aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 640 |||||||||||||| | || |||||||| |||| || ||| |||| ||||||| |||| Sbjct: 101241 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 101182 Query: 641 tgctc 645 ||||| Sbjct: 101181 tgctc 101177
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0028A08 Length = 150818 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 581 aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 640 |||||||||||||| | || |||||||| |||| || ||| |||| ||||||| |||| Sbjct: 27327 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 27268 Query: 641 tgctc 645 ||||| Sbjct: 27267 tgctc 27263
>ref|XM_313095.2| Anopheles gambiae str. PEST ENSANGP00000012870 (ENSANGG00000010381), partial mRNA Length = 1767 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 223 acttcaggttgttgcacgtcttcag 247 |||||||||| |||||||||||||| Sbjct: 811 acttcaggttcttgcacgtcttcag 787
>dbj|AK110869.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E04, full insert sequence Length = 2144 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 581 aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 640 |||||||||||||| | || |||||||| |||| || ||| |||| ||||||| |||| Sbjct: 318 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 259 Query: 641 tgctc 645 ||||| Sbjct: 258 tgctc 254
>dbj|AK103460.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129L23, full insert sequence Length = 780 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 581 aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 640 |||||||||||||| | || |||||||| |||| || ||| |||| ||||||| |||| Sbjct: 265 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 206 Query: 641 tgctc 645 ||||| Sbjct: 205 tgctc 201
>emb|AL591374.5| Zebrafish DNA sequence from clone BUSM1-204B6 in linkage group 6, complete sequence Length = 102137 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ataacttgcatacttcaggtt 232 ||||||||||||||||||||| Sbjct: 46935 ataacttgcatacttcaggtt 46915
>emb|AL591462.5| Zebrafish DNA sequence from clone BUSM1-204D19 in linkage group 6, complete sequence Length = 77242 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 ataacttgcatacttcaggtt 232 ||||||||||||||||||||| Sbjct: 51645 ataacttgcatacttcaggtt 51665
>emb|BX293986.7| Mouse DNA sequence from clone RP24-492P10 on chromosome X, complete sequence Length = 114458 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 acttgcatacttcaggttgtt 235 ||||||||||||||||||||| Sbjct: 108622 acttgcatacttcaggttgtt 108642
>emb|BX294368.7| Zebrafish DNA sequence from clone CH211-244N12 in linkage group 6, complete sequence Length = 147484 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 ataacttgcatacttcaggtt 232 ||||||||||||||||||||| Sbjct: 132193 ataacttgcatacttcaggtt 132213
>gb|AC122011.3| Mus musculus chromosome 10 clone RP24-352E6, complete sequence Length = 181468 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 aattattttaaagaaaaaga 80 |||||||||||||||||||| Sbjct: 96662 aattattttaaagaaaaaga 96681
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 atctgctgctgaagatggag 428 |||||||||||||||||||| Sbjct: 749472 atctgctgctgaagatggag 749491
>gb|AC168021.4| Mus musculus BAC clone CH25-320O8 from chromosome 9, complete sequence Length = 96013 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 gcaaattattttaaagaaaa 77 |||||||||||||||||||| Sbjct: 10720 gcaaattattttaaagaaaa 10739
>gb|AC123599.6| Mus musculus chromosome 5, clone RP23-231D13, complete sequence Length = 191607 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ttattttaaagaaaaagata 82 |||||||||||||||||||| Sbjct: 72856 ttattttaaagaaaaagata 72875
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0092N12, complete sequence Length = 109198 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ttttaaagaaaaagataagt 85 |||||||||||||||||||| Sbjct: 16225 ttttaaagaaaaagataagt 16244
>ref|XM_458866.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D10175g) partial mRNA Length = 2034 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 ttagattgttttctgttgcc 340 |||||||||||||||||||| Sbjct: 409 ttagattgttttctgttgcc 390
>gb|AC161236.6| Mus musculus chromosome 3, clone RP23-403O4, complete sequence Length = 206652 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tcaacaatagttacttcttc 546 |||||||||||||||||||| Sbjct: 73528 tcaacaatagttacttcttc 73547
>gb|AC006033.2| Homo sapiens BAC clone RP11-121A8 from 7, complete sequence Length = 171816 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 aaattattttaaagaaaaagataa 83 |||||||| ||||||||||||||| Sbjct: 2523 aaattattctaaagaaaaagataa 2500
>gb|AC129336.4| Mus musculus BAC clone RP23-113I7 from chromosome 10, complete sequence Length = 215437 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 aattattttaaagaaaaaga 80 |||||||||||||||||||| Sbjct: 4918 aattattttaaagaaaaaga 4937
>emb|BX548019.36| Zebrafish DNA sequence from clone DKEY-20D1 in linkage group 6, complete sequence Length = 202848 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 aaggcaaattattttaaaga 74 |||||||||||||||||||| Sbjct: 104685 aaggcaaattattttaaaga 104704
>gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-100B4 ~complete genomic sequence, complete sequence Length = 174826 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aggcaaattattttaaagaa 75 |||||||||||||||||||| Sbjct: 16398 aggcaaattattttaaagaa 16379
>gb|AC129217.3| Mus musculus BAC clone RP24-458M20 from chromosome 19, complete sequence Length = 175796 Score = 40.1 bits (20), Expect = 9.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 55 aaggcaaattattttaaagaaaaagataagtt 86 |||| ||||| ||||||||||||||| ||||| Sbjct: 134777 aaggaaaatttttttaaagaaaaagaaaagtt 134746
>gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complete sequence Length = 189927 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aattattttaaagaaaaaga 80 |||||||||||||||||||| Sbjct: 80639 aattattttaaagaaaaaga 80620
>emb|CR293531.11| Zebrafish DNA sequence from clone DKEY-125H23 in linkage group 21, complete sequence Length = 116173 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 619 gtatctgtttaccttctgttcatg 642 |||||| ||||||||||||||||| Sbjct: 79772 gtatctatttaccttctgttcatg 79795
>gb|AC146585.18| Medicago truncatula clone mth2-68o3, complete sequence Length = 124526 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 ttattttaaagaaaaagataagtt 86 ||||||| |||||||||||||||| Sbjct: 114840 ttatttttaagaaaaagataagtt 114863
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 689 tcggacttgacggtgagcat 708 |||||||||||||||||||| Sbjct: 4694557 tcggacttgacggtgagcat 4694576
>emb|AL157713.10| Human DNA sequence from clone RP11-110J1 on chromosome 1q23.3-24.3 Contains the ETV3 gene for ets variant gene 3, a cytochrome c somatic pseudogene (HCP2), a ets variant gene 3 (ETV3) pseudogene, a keratin 8 (KRT8) pseudogene, a smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) (SMU1) pseudogene, the 5' end of the ARHGEF11 gene for Rho guanine nucleotide exchange factor (GEF) 11 and two CPG islands, complete sequence Length = 167292 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 ttcttggcagaggaatctgc 414 |||||||||||||||||||| Sbjct: 69571 ttcttggcagaggaatctgc 69590
>emb|AL136992.22| Human DNA sequence from clone RP11-400P21 on chromosome 20 Contains the SCYE1P gene for small inducible cytokine subfamily E member 1 (endothelial-monocyte activating) pseudogene, complete sequence Length = 163681 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 caaattattttaaagaaaaa 78 |||||||||||||||||||| Sbjct: 6400 caaattattttaaagaaaaa 6381
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ttttaaagaaaaagataagt 85 |||||||||||||||||||| Sbjct: 986329 ttttaaagaaaaagataagt 986310
>gb|AC073153.16| Mus musculus Strain C57BL6/J chromosome 19 BAC, RP23-49P8 Complete Sequence, complete sequence Length = 220143 Score = 40.1 bits (20), Expect = 9.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 55 aaggcaaattattttaaagaaaaagataagtt 86 |||| ||||| ||||||||||||||| ||||| Sbjct: 95210 aaggaaaatttttttaaagaaaaagaaaagtt 95241
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii Length = 1602771 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ttagattgttttctgttgcc 340 |||||||||||||||||||| Sbjct: 979415 ttagattgttttctgttgcc 979434 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ttagattgttttctgttgcc 340 |||||||||||||||||||| Sbjct: 748641 ttagattgttttctgttgcc 748660
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 caaattattttaaagaaaaa 78 |||||||||||||||||||| Sbjct: 116822 caaattattttaaagaaaaa 116803
>emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 2/17 Length = 349287 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 689 tcggacttgacggtgagcat 708 |||||||||||||||||||| Sbjct: 118893 tcggacttgacggtgagcat 118874
>gb|AC123901.2| Homo sapiens chromosome 3 clone RP11-952G4, complete sequence Length = 217409 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 tttttatttcatgataactt 218 |||||||||||||||||||| Sbjct: 75776 tttttatttcatgataactt 75795
>gb|AC009509.7| Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192690 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 571 cttattagagaagtatttggcctt 594 |||||||||||||| ||||||||| Sbjct: 45223 cttattagagaagtctttggcctt 45246
>emb|BX571694.10| Zebrafish DNA sequence from clone CH211-159E21 in linkage group 10, complete sequence Length = 163542 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 aattattttaaagaaaaaga 80 |||||||||||||||||||| Sbjct: 87612 aattattttaaagaaaaaga 87631
>emb|BX571699.10| Zebrafish DNA sequence from clone DKEYP-116G9 in linkage group 6, complete sequence Length = 173467 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aaggcaaattattttaaaga 74 |||||||||||||||||||| Sbjct: 41553 aaggcaaattattttaaaga 41534
>gb|AC092305.2| Homo sapiens chromosome 19 clone LLNLR-229B1, complete sequence Length = 35935 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ttaaagaaaaagataagttg 87 |||||||||||||||||||| Sbjct: 13470 ttaaagaaaaagataagttg 13489
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 attattttaaagaaaaagat 81 |||||||||||||||||||| Sbjct: 15374438 attattttaaagaaaaagat 15374457
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ttttaaagaaaaagataagt 85 |||||||||||||||||||| Sbjct: 986329 ttttaaagaaaaagataagt 986310
>dbj|AB210654.1| Ciona intestinalis mRNA for transcription factor protein, complete cds, clone: cima809p12 Length = 2868 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 aaagaaaaagataagttgcatgct 93 ||||||||||| |||||||||||| Sbjct: 2427 aaagaaaaagaaaagttgcatgct 2404
>gb|AC007464.4| Homo sapiens BAC clone RP11-542B5 from 2, complete sequence Length = 186187 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aggcaaattattttaaagaa 75 |||||||||||||||||||| Sbjct: 141469 aggcaaattattttaaagaa 141450
>gb|AC010606.7| Homo sapiens chromosome 19 clone CTB-25J19, complete sequence Length = 105940 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ttaaagaaaaagataagttg 87 |||||||||||||||||||| Sbjct: 38466 ttaaagaaaaagataagttg 38447
>gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, complete sequence Length = 216977 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ttattttaaagaaaaagata 82 |||||||||||||||||||| Sbjct: 34939 ttattttaaagaaaaagata 34920
>gb|AC108059.6| Homo sapiens BAC clone RP11-398G9 from 2, complete sequence Length = 124950 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 caaattattttaaagaaaaa 78 |||||||||||||||||||| Sbjct: 76775 caaattattttaaagaaaaa 76756
>gb|AC010974.9| Homo sapiens BAC clone RP11-159N20 from 2, complete sequence Length = 147131 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 532 aatagttacttcttcaaagatttttcct 559 ||||||||||||| |||||||| ||||| Sbjct: 61994 aatagttacttctacaaagattcttcct 62021
>gb|AC005146.1| Homo sapiens 12 PAC RP1-157K6 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 157653 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cttgcatacttcaggttgtt 235 |||||||||||||||||||| Sbjct: 62141 cttgcatacttcaggttgtt 62160
>gb|AC004756.1|AC004756 Homo sapiens chromosome 17, clone hCIT.508_D_18, complete sequence Length = 71734 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 aggcaaattattttaaagaaaaag 79 ||||||||| |||||||||||||| Sbjct: 32155 aggcaaatttttttaaagaaaaag 32178
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 407 gaatctgctgctgaagatggagaa 430 |||||||| ||||||||||||||| Sbjct: 5408254 gaatctgccgctgaagatggagaa 5408231
>dbj|AK174917.1| Ciona intestinalis cDNA, clone:citb045l01, full insert sequence Length = 2515 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 aaagaaaaagataagttgcatgct 93 ||||||||||| |||||||||||| Sbjct: 2238 aaagaaaaagaaaagttgcatgct 2215
>emb|BX004878.8| Zebrafish DNA sequence from clone DKEY-11H2 in linkage group 6, complete sequence Length = 254657 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aaggcaaattattttaaaga 74 |||||||||||||||||||| Sbjct: 202180 aaggcaaattattttaaaga 202161
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 atggtttctccttcaacaat 534 |||||||||||||||||||| Sbjct: 1961130 atggtttctccttcaacaat 1961149
>dbj|AP001827.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-236L10, complete sequence Length = 167639 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 acttcttcaaagatttttcc 558 |||||||||||||||||||| Sbjct: 128273 acttcttcaaagatttttcc 128292
>gb|AC114602.16| Mus musculus chromosome 8, clone RP23-339B16, complete sequence Length = 196024 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 aaattattttaaagaaaaagataa 83 |||||||||| ||||||||||||| Sbjct: 117014 aaattatttttaagaaaaagataa 117037
>dbj|AP003110.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-843A23, complete sequence Length = 142000 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gtgttagattgttttctgtt 337 |||||||||||||||||||| Sbjct: 96387 gtgttagattgttttctgtt 96406
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ttttaaagaaaaagataagt 85 |||||||||||||||||||| Sbjct: 986326 ttttaaagaaaaagataagt 986307
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 attattttaaagaaaaagat 81 |||||||||||||||||||| Sbjct: 15328721 attattttaaagaaaaagat 15328740
>emb|AL713928.3|CNS07YP5 Oryza sativa chromosome 12, . BAC OSJNBa0036B12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151541 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 attattttaaagaaaaagat 81 |||||||||||||||||||| Sbjct: 149831 attattttaaagaaaaagat 149850
>emb|BX005364.9| Zebrafish DNA sequence from clone DKEY-222L20, complete sequence Length = 156035 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 619 gtatctgtttaccttctgtt 638 |||||||||||||||||||| Sbjct: 83163 gtatctgtttaccttctgtt 83144
>gb|AC140491.4| Mus musculus BAC clone RP24-136G21 from 9, complete sequence Length = 163404 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 gcaaattattttaaagaaaa 77 |||||||||||||||||||| Sbjct: 143468 gcaaattattttaaagaaaa 143487 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,600,798 Number of Sequences: 3902068 Number of extensions: 7600798 Number of successful extensions: 148863 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 148339 Number of HSP's gapped (non-prelim): 525 length of query: 713 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 690 effective length of database: 17,143,297,704 effective search space: 11828875415760 effective search space used: 11828875415760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)