>CRYD_SYNY3 (P77967) Cryptochrome DASH|
          Length = 489

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 39/79 (49%), Positives = 55/79 (69%)
 Frame = -2

Query: 569 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 390
           T+N + GA++S K SPWLA GCLSPRF+Y+E+K++            + +  S+  T+WL
Sbjct: 239 TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRY------------EQERVSNDSTHWL 286

Query: 389 MFELLWRDFFRFVTKKYSS 333
           +FELLWRDFFRFV +KY +
Sbjct: 287 IFELLWRDFFRFVAQKYGN 305

>CRYD_BRARE (Q4KML2) Cryptochrome DASH (Protein CRY-DASH) (zCRY-DASH)|
          Length = 520

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 36/84 (42%), Positives = 54/84 (64%)
 Frame = -2

Query: 584 AVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDA 405
           A    T+N + G +FS K SPWLA GC+SPR++YE++KK+ +            + T++ 
Sbjct: 237 ATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEV------------ERTANQ 284

Query: 404 GTNWLMFELLWRDFFRFVTKKYSS 333
            T W++FELLWRD+F+FV  KY +
Sbjct: 285 STYWVIFELLWRDYFKFVALKYGN 308

>CRYD_XENLA (Q75WS4) Cryptochrome DASH|
          Length = 523

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 33/77 (42%), Positives = 51/77 (66%)
 Frame = -2

Query: 569 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 390
           T+N + G ++S K +PWLA GC+SPR++YE++ K+            + + T++  T W+
Sbjct: 243 TRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKY------------EKERTANQSTYWV 290

Query: 389 MFELLWRDFFRFVTKKY 339
           +FELLWRD+FRFV  KY
Sbjct: 291 IFELLWRDYFRFVALKY 307

>CRYD_ORYSA (Q651U1) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 582

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 34/84 (40%), Positives = 54/84 (64%)
 Frame = -2

Query: 581 VKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAG 402
           V   T+N + G ++S K SPWLA+G LSPR++ EE+K++  + I + S            
Sbjct: 333 VYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRIANDS------------ 380

Query: 401 TNWLMFELLWRDFFRFVTKKYSSA 330
           T W++FEL+WRD+FRF++ KY ++
Sbjct: 381 TYWVLFELIWRDYFRFISAKYGNS 404

>CRYD_ARATH (Q84KJ5) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 569

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 33/80 (41%), Positives = 51/80 (63%)
 Frame = -2

Query: 581 VKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAG 402
           V   T+N + G ++S K SPWLA GC+SPRF+YEE++++    + + S            
Sbjct: 315 VYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS------------ 362

Query: 401 TNWLMFELLWRDFFRFVTKK 342
           T W++FEL+WRD+FRF++ K
Sbjct: 363 TYWVLFELIWRDYFRFLSIK 382

>CRYD_NATPD (Q3IPX9) Cryptochrome DASH|
          Length = 474

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 32/80 (40%), Positives = 52/80 (65%)
 Frame = -2

Query: 572 STQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNW 393
           +T+N + GA++S K SPWLA GCLSPR+++ E++++            + +  ++  T W
Sbjct: 234 TTRNGLLGADYSSKFSPWLAAGCLSPRWLHREVERY------------EDERVANEDTYW 281

Query: 392 LMFELLWRDFFRFVTKKYSS 333
           L+FEL WRDFF+F  +KY +
Sbjct: 282 LVFELAWRDFFQFQFEKYGA 301

>CRYD_GLOVI (Q7NMD1) Cryptochrome DASH|
          Length = 500

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 32/77 (41%), Positives = 49/77 (63%)
 Frame = -2

Query: 569 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 390
           T+N + GA++S K S WLA GCLS R+++E+++ +  + I + S            T WL
Sbjct: 237 TRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIKNDS------------TYWL 284

Query: 389 MFELLWRDFFRFVTKKY 339
           +FELLWRD+FRF+  K+
Sbjct: 285 IFELLWRDYFRFIAAKH 301

>CRYD_LYCES (Q38JU2) Cryptochrome DASH, chloroplast/mitochondrial precursor|
           (Cryptochrome-3)
          Length = 577

 Score = 69.3 bits (168), Expect = 9e-12
 Identities = 33/83 (39%), Positives = 53/83 (63%)
 Frame = -2

Query: 581 VKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAG 402
           V   T+N + GA++S K SPWLA+G LSPRF+ EE+K++            + +  S+  
Sbjct: 323 VYKETRNGMLGADYSTKFSPWLASGSLSPRFIDEEVKRY------------EKERLSNDS 370

Query: 401 TNWLMFELLWRDFFRFVTKKYSS 333
           T W++FEL+WRD+F F++ K ++
Sbjct: 371 TYWVLFELIWRDYFGFLSIKLAN 393

>CRYD_OSTTA (Q5IFN2) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 546

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 27/79 (34%), Positives = 48/79 (60%)
 Frame = -2

Query: 569 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 390
           T+N + G ++S K++PWLA GC+SPR +  E++++            + +   +  T W+
Sbjct: 270 TRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRY------------ESERVENKSTYWV 317

Query: 389 MFELLWRDFFRFVTKKYSS 333
           +FEL+WRDFF+F   K+ +
Sbjct: 318 IFELIWRDFFKFFALKHGN 336

>CRYD_RHOBA (Q7UJB1) Cryptochrome DASH|
          Length = 488

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 29/83 (34%), Positives = 49/83 (59%)
 Frame = -2

Query: 581 VKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAG 402
           V   T+N +   N S K SPWLA GCLSPR + + ++++            + +   +  
Sbjct: 232 VYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRY------------EEERVKNKS 279

Query: 401 TNWLMFELLWRDFFRFVTKKYSS 333
           T W++FELLWRD+FR++++K+ +
Sbjct: 280 TYWMIFELLWRDYFRWISRKHGA 302

>CRYD_VIBPA (Q87JP5) Cryptochrome DASH|
          Length = 445

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 29/77 (37%), Positives = 45/77 (58%)
 Frame = -2

Query: 569 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 390
           T+N + G  +S K SPWLA GC+SPR ++  LK++           +   G +D+ T W+
Sbjct: 225 TRNGLDGMAYSTKFSPWLALGCVSPRMIHAMLKQY-----------EQTQGANDS-TYWI 272

Query: 389 MFELLWRDFFRFVTKKY 339
            FELLWR++F +  + Y
Sbjct: 273 YFELLWREYFYWYARCY 289

>CRYD_VIBCH (Q9KR33) Cryptochrome DASH|
          Length = 461

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 27/79 (34%), Positives = 47/79 (59%)
 Frame = -2

Query: 569 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 390
           T+N + G ++S K SPWLA G +SP+ +Y  L+++           +   G +D+ T W+
Sbjct: 225 TRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY-----------EAVHGANDS-TYWI 272

Query: 389 MFELLWRDFFRFVTKKYSS 333
            FELLWR++F +  ++Y +
Sbjct: 273 FFELLWREYFYWYARRYGA 291

>CRYD_NEUCR (Q7SI68) Putative crytochrome DASH, mitochondrial precursor|
          Length = 745

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
 Frame = -2

Query: 587 KAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPK----DGD 420
           K+ KDS +N + G +FS K+S +LA GC++ R ++     HA+ A   G+  K    DG 
Sbjct: 285 KSYKDS-RNGLLGPDFSTKLSAYLAQGCVTARQIH-----HALVAYEDGTGTKYKGADGF 338

Query: 419 GTSD-AGTNWLMFELLWRDFFRFVTKKY 339
           G  D  GT  +  ELLWRD+ R   +KY
Sbjct: 339 GEGDNQGTETVRMELLWRDYMRLCHQKY 366

>CRYD_GIBZE (Q4I1Q6) Putative crytochrome DASH|
          Length = 678

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 27/77 (35%), Positives = 41/77 (53%)
 Frame = -2

Query: 569 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 390
           T+N + G  +S K+S +LA G ++ R ++ EL K    +  S S         + GT  +
Sbjct: 268 TRNGLLGTEYSTKLSAFLAMGTITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTRAV 327

Query: 389 MFELLWRDFFRFVTKKY 339
            FELLWRD+ R  T K+
Sbjct: 328 RFELLWRDYMRLCTFKF 344

>CRYD_IDILO (Q5QXE0) Cryptochrome DASH|
          Length = 449

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = -2

Query: 569 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 390
           T+N++   + S K SPWLA GCLS R +   L+ +            + +   +  + W+
Sbjct: 237 TRNALDDFSSSTKFSPWLAQGCLSVRQIMAALRAY------------ETEFGENESSYWI 284

Query: 389 MFELLWRDFFRFVTKKY 339
            FELLWR++F +   K+
Sbjct: 285 SFELLWREYFFWYALKH 301

>PHR_ECOLI (P00914) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 472

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 27/89 (30%), Positives = 39/89 (43%)
 Frame = -2

Query: 590 NKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTS 411
           N A +   Q        + ++S  LATG LSPR     L     +A+  G          
Sbjct: 218 NGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG---------- 267

Query: 410 DAGTNWLMFELLWRDFFRFVTKKYSSAQK 324
            AG+ WL  EL+WR+F+R +   + S  K
Sbjct: 268 -AGSVWLN-ELIWREFYRHLITYHPSLCK 294

>PHR_SALTY (P25078) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 473

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = -2

Query: 533 KISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRF 354
           ++S  LATG LSPR     L     +A+  G            G+ WL  EL+WR+F+R 
Sbjct: 238 RLSASLATGGLSPRQCLHRLLAEQPQALDGGP-----------GSVWLN-ELIWREFYRH 285

Query: 353 VTKKYSSAQK 324
           +   Y +  K
Sbjct: 286 LMTWYPALCK 295

>PIP_SERMA (O32449) Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl|
           aminopeptidase) (PAP)
          Length = 317

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +2

Query: 92  DRYNNLFRDQIGPKCRNSLLGASLSGNIYWEKIHSIERLHELA 220
           +RY  L  DQ G  C  S   ASL  N  W  +  IERL E+A
Sbjct: 62  ERYKVLLFDQRG--CGRSRPHASLDNNTTWHLVADIERLREMA 102

>POF2_SCHPO (O74783) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat|
           protein 2) (F-box protein pof2)
          Length = 463

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 93  TDTTISSEIKLVQNAGTAYLGHHYQATFIGKKSTPLKGC 209
           TD+++ S  KL Q+  T +LGH Y+ T IG +   LK C
Sbjct: 291 TDSSLLSLTKLSQSLTTLHLGHCYEITDIGVQCL-LKSC 328

>EXTL2_MOUSE (Q9ES89) Exostosin-like 2 (EC 2.4.1.223)|
           (Glucuronyl-galactosyl-proteoglycan
           4-alpha-N-acetylglucosaminyltransferase)
           (Alpha-1,4-N-acetylhexosaminyltransferase EXTL2)
           (Alpha-GalNAcT EXTL2) (EXT-related protein 2)
          Length = 330

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 418 PSPSLGVDPDGIALMACFFNSSYMKRGERQPVASHGEI 531
           P P  G     + + A FFNS Y++  ++QP A H  I
Sbjct: 201 PGPGNGDQYSMVLIGASFFNSKYLELFQKQPAAVHALI 238

>K502_ACTCH (P43394) Fruit protein PKIWI502|
          Length = 317

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +1

Query: 292 VQPVAGATSDVFCAELYFFVTNLKKSLHSNSNINQFVPASDVPSPSLGVDPDGIALMACF 471
           ++ V G TS+V C+     V +L + +    +I Q +P  D P+  + V   G++    F
Sbjct: 150 IRSVPGTTSEVLCSLKEGDVVDLTQIIGRGFDIEQILPPEDYPTVLISVTGYGMSAGRSF 209

Query: 472 FNSSY 486
               +
Sbjct: 210 IEEGF 214

>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1)
          Length = 715

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 382 NCYGEISSGSSQRSTALHRRHPKLHRPLVAHL 287
           N YG +   S+ RS++L+R+HPK  R + + L
Sbjct: 107 NKYGHLDMFSTLRSSSLYRQHPKTLRSICSDL 138

>RNZ_PYRHO (O58883) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 307

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 500 SPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFEL 378
           SPR+ ++E K+ A+   P    P+D D  +  G   ++F++
Sbjct: 266 SPRYSFKEYKEKALSICPQAIIPRDFDRIAIEGAGDVLFKI 306

>HEP2_HUMAN (P05546) Heparin cofactor 2 precursor (Heparin cofactor II) (HC-II)|
           (Protease inhibitor leuserpin 2) (HLS2)
          Length = 499

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 29  RKKVKKASRIFYTIRVLQKNVDRYNNLFRDQIGPKCRNSLLGASLSGNIYWEKIHSI 199
           R  +  A   F   RVL+  V+ ++N+F   +G      ++   L G  + E++HSI
Sbjct: 125 RLNILNAKFAFNLYRVLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETH-EQVHSI 180


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,228,834
Number of Sequences: 219361
Number of extensions: 1980435
Number of successful extensions: 5440
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5422
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)