>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3471

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = -1

Query: 268 AGPTDAHGAYXFSGYXGEYVVTVNAGNTSKQATFSLSPGD 149
           AGPTD H A     Y G +   V+ G  S   TFSL P D
Sbjct: 665 AGPTDEHNAMLQKIYLGSFKWKVSDGGGSILKTFSL-PSD 703

>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)|
          Length = 1222

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = -1

Query: 259 TDAHGAYXFSGYXGEYVVTV-------NAGNTSKQATFSLSPGD 149
           TDAHG++ F    G Y V V        AG T K  TF L+  D
Sbjct: 447 TDAHGSFCFKANPGTYKVQVMVPEAETRAGLTLKPQTFPLTVTD 490

>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)|
          Length = 1267

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = -1

Query: 259 TDAHGAYXFSGYXGEYVVTV-------NAGNTSKQATFSLSPGD 149
           TDAHG++ F    G Y V V        AG T K  TF L+  D
Sbjct: 447 TDAHGSFCFKAKPGTYKVQVMVPEAETRAGLTLKPQTFPLTVTD 490

>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)|
          Length = 1222

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
 Frame = -1

Query: 259 TDAHGAYXFSGYXGEYVVTV-------NAGNTSKQATFSLS 158
           TDAHG++ F    G Y V V        AG T K  TF L+
Sbjct: 447 TDAHGSFCFKAKPGTYKVQVMVPEAETRAGLTLKPQTFPLT 487


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,631,794
Number of Sequences: 219361
Number of extensions: 494368
Number of successful extensions: 1363
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)