ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19c09 |
|---|---|
| Clone Library Name | barley_pub |
>ATPQ_ARATH (Q9FT52) ATP synthase D chain, mitochondrial (EC 3.6.3.14)| Length = 167 Score = 117 bits (293), Expect = 7e-27 Identities = 58/82 (70%), Positives = 61/82 (74%) Frame = -2 Query: 369 EIPKYVDTVTPRYKPKFDALLVELKEAEKTSLKESXXXXXXXXXXXXXXXXISTMTADEY 190 EIPKYVD VTP YKPKFDALLVELKEAE+ SLKES +STMTADEY Sbjct: 86 EIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEY 145 Query: 189 FAKHPELKKKFDDEMRNDYWGY 124 F KHPELKKKFDDE+RND WGY Sbjct: 146 FEKHPELKKKFDDEIRNDNWGY 167
>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor| YT521) (RA301-binding protein) Length = 738 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 298 EGGREDISEGIREDREGDC*NEGDEEKDQHND 203 EGG ED+ E D +GD E DE+ ++ D Sbjct: 202 EGGEEDVEEDEEVDEDGDDDEEVDEDAEEEED 233
>AATF_RAT (Q9QYW0) Protein AATF (Apoptosis-antagonizing transcription factor)| Length = 523 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = -1 Query: 298 EGGREDISEGIREDREGDC*NEGDEEKDQHNDSRRVL 188 EG E+ISE + ED EG+ +E D E+D++++ V+ Sbjct: 139 EGLEEEISEDVEEDLEGE--DEEDREEDRNSEDDGVV 173
>BFR2_ASPFU (Q4WMI1) Protein bfr2| Length = 565 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 11/47 (23%) Frame = -1 Query: 298 EGGREDISEGIRED-----------REGDC*NEGDEEKDQHNDSRRV 191 EG +D +G ED +EGD + DE++D+ D+R+V Sbjct: 165 EGSEDDSEDGFDEDDMSGEFSSDDDQEGDEDGDDDEDEDEETDNRKV 211
>KITH_ZYMMO (Q5NQ29) Thymidine kinase (EC 2.7.1.21)| Length = 193 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 14 PVLCYGIHTSLDDEIPEGQRSIIECSGK 97 PVLCYG+ T E+ EG + ++ + K Sbjct: 110 PVLCYGLRTDFQAELFEGSKYLLAIADK 137
>XPR6_YARLI (P42781) Dibasic-processing endoprotease precursor (EC 3.4.21.-)| Length = 976 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 292 GREDISEGIREDREGDC*NEGDEEKDQHND 203 G+E EG +ED +GD +G+E+ D D Sbjct: 196 GQEAQKEGDKEDNKGDDKEDGEEDDDDDED 225
>KITH_VIBVY (Q7MLR4) Thymidine kinase (EC 2.7.1.21)| Length = 192 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 14 PVLCYGIHTSLDDEIPEGQRSIIECSGK 97 PVLCYG+ T E+ EG + ++ + K Sbjct: 110 PVLCYGLRTDFLGELFEGSKYLLSWADK 137
>KITH_VIBVU (Q8D8R2) Thymidine kinase (EC 2.7.1.21)| Length = 192 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 14 PVLCYGIHTSLDDEIPEGQRSIIECSGK 97 PVLCYG+ T E+ EG + ++ + K Sbjct: 110 PVLCYGLRTDFLGELFEGSKYLLSWADK 137
>KITH_VIBPA (Q87QJ8) Thymidine kinase (EC 2.7.1.21)| Length = 192 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 14 PVLCYGIHTSLDDEIPEGQRSIIECSGK 97 PVLCYG+ T E+ EG + ++ + K Sbjct: 110 PVLCYGLRTDFLGELFEGSKYLLSWADK 137
>KITH_VIBCH (Q9KST9) Thymidine kinase (EC 2.7.1.21)| Length = 192 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 14 PVLCYGIHTSLDDEIPEGQRSIIECSGK 97 PVLCYG+ T E+ EG + ++ + K Sbjct: 110 PVLCYGLRTDFLGELFEGSKYLLSWADK 137
>KITH_PASMU (P57926) Thymidine kinase (EC 2.7.1.21)| Length = 192 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +2 Query: 14 PVLCYGIHTSLDDEIPEGQRSII 82 PVLCYG+ T E+ EG + ++ Sbjct: 110 PVLCYGLRTDFQAELFEGSKYLL 132
>AN32C_HUMAN (O43423) Acidic leucine-rich nuclear phosphoprotein 32 family| member C (Tumorigenic protein pp32r1) Length = 234 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -1 Query: 298 EGGREDISEGIREDREGDC*NEGDEEKDQ 212 EG ED+S G ED EG E D E+D+ Sbjct: 193 EGEEEDVSGGDEEDEEGYNDGEVDGEEDE 221
>ONEC_DROME (Q9NJB5) Homeobox protein onecut| Length = 1081 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -1 Query: 298 EGGREDISEGIREDREGDC*NEGDEEKDQHN 206 + +ED E D EGD NE D+E+D + Sbjct: 276 DSDKEDCEENDDGDAEGDLENEDDDERDSRS 306
>KITH_HAEDU (Q7VLH2) Thymidine kinase (EC 2.7.1.21)| Length = 198 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +2 Query: 14 PVLCYGIHTSLDDEIPEGQRSII 82 PVLCYG+ T E+ EG + ++ Sbjct: 110 PVLCYGLRTDFQKELFEGSQYLL 132
>KITH_HAEIN (P44309) Thymidine kinase (EC 2.7.1.21)| Length = 193 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +2 Query: 14 PVLCYGIHTSLDDEIPEGQRSII 82 PVLCYG+ T E+ EG + ++ Sbjct: 110 PVLCYGLRTDFQAELFEGSKYLL 132
>KITH_MANSM (Q65RN9) Thymidine kinase (EC 2.7.1.21)| Length = 195 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +2 Query: 14 PVLCYGIHTSLDDEIPEGQRSII 82 PVLCYG+ T E+ EG + ++ Sbjct: 110 PVLCYGLRTDFQAELFEGSQYLL 132
>USP9X_HUMAN (Q93008) Probable ubiquitin carboxyl-terminal hydrolase FAF-X (EC| 3.1.2.15) (Ubiquitin thioesterase FAF-X) (Ubiquitin specific-processing protease FAF-X) (Deubiquitinating enzyme FAF-X) (Fat facets protein related, X-linked) (Ubiquitin-specif Length = 2547 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 5/39 (12%) Frame = -1 Query: 115 DGSPSSFTRAFNNTSLSLWNF-----IIQTCVNSIT*DW 14 DG SFT+ + ++S W F +++ CV ++ DW Sbjct: 122 DGLTISFTKILTDEAVSGWKFEIHVSLVELCVAKLSQDW 160
>AATF_MOUSE (Q9JKX4) Protein AATF (Apoptosis-antagonizing transcription factor)| (Rb-binding protein Che-1) (Traube protein) Length = 526 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = -1 Query: 292 GREDISEGIREDREGDC*NEGDEEKDQHNDSRRVL 188 G E+ SE + ED EG+ +E D E+D++++ V+ Sbjct: 144 GLEEFSEDVEEDLEGE--DEEDREEDRNSEDDGVV 176
>YNH7_YEAST (P53940) Hypothetical 58.9 kDa protein in TPM1-MKS1 intergenic| region Length = 528 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = -1 Query: 118 NDGSPSSFTRAFNNTSLSLWNFIIQTCVNSI 26 ++GS SSF +FNN+S ++F+ + VN++ Sbjct: 127 SNGSKSSFNFSFNNSSTPSFSFVNGSGVNNL 157
>TSD2_USTMA (Q99107) Protein TSD2| Length = 845 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -1 Query: 298 EGGREDISEGIREDREGDC*NEGDEEKDQHNDS 200 +GG D E + D + D ++ D D H+DS Sbjct: 180 QGGERDAFEKLEFDVDSDSESDSDSHSDSHSDS 212
>TRAA_AGRTU (Q44363) Conjugal transfer protein traA| Length = 1100 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 112 HRYLVSPVIVTHLIIKLLLEFRVLR 186 HRY+ P + L+IK++L +VLR Sbjct: 298 HRYIDDPALFQQLMIKIILNRQVLR 322
>ECA3_ARATH (Q9SY55) Calcium-transporting ATPase 3, endoplasmic reticulum-type| (EC 3.6.3.8) Length = 998 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = +3 Query: 54 KFQRDKEVLLNALVKELGLPSLSSIPS--NRYASHHQTS 164 K EV L L +++GLP S+PS N + H + S Sbjct: 433 KIGESTEVALRVLAEKVGLPGFDSMPSALNMLSKHERAS 471 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,529,958 Number of Sequences: 219361 Number of extensions: 666175 Number of successful extensions: 2020 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1954 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2015 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
