>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
            proteasome regulatory subunit RPN1) (26S proteasome
            regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score =  116 bits (291), Expect = 4e-26
 Identities = 57/94 (60%), Positives = 69/94 (73%)
 Frame = -2

Query: 578  KYHYILYIIVLAMQPRMLLTVDEDLKPLXXXXXXXXXXXXXXXXXRPKTITGFQTHTTPV 399
            K HY+LY +V AMQPRML+T DE+L+PL                 +PKTITGFQTHTTPV
Sbjct: 813  KSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPV 872

Query: 398  LLAAGERAELATDKYIPLTSTLEGFVILKKNPEY 297
            LLA GERAELAT++++P+T  LEGFVIL+KNP Y
Sbjct: 873  LLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
            proteasome regulatory subunit RPN1) (26S proteasome
            regulatory subunit S2) (26S proteasome subunit p97)
            (Tumor necrosis factor type 1 receptor-associated protein
            2) (55.11 protein)
          Length = 908

 Score =  116 bits (291), Expect = 4e-26
 Identities = 57/94 (60%), Positives = 69/94 (73%)
 Frame = -2

Query: 578  KYHYILYIIVLAMQPRMLLTVDEDLKPLXXXXXXXXXXXXXXXXXRPKTITGFQTHTTPV 399
            K HY+LY +V AMQPRML+T DE+L+PL                 +PKTITGFQTHTTPV
Sbjct: 813  KSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPV 872

Query: 398  LLAAGERAELATDKYIPLTSTLEGFVILKKNPEY 297
            LLA GERAELAT++++P+T  LEGFVIL+KNP Y
Sbjct: 873  LLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score =  109 bits (272), Expect = 6e-24
 Identities = 57/97 (58%), Positives = 67/97 (69%)
 Frame = -2

Query: 578  KYHYILYIIVLAMQPRMLLTVDEDLKPLXXXXXXXXXXXXXXXXXRPKTITGFQTHTTPV 399
            K HY+LY IV AM PRML+T+DEDLKPL                 RPKTITG+QT +TPV
Sbjct: 786  KSHYLLYWIVTAMHPRMLVTLDEDLKPLTVNVRVGQAVDVVGQAGRPKTITGWQTQSTPV 845

Query: 398  LLAAGERAELATDKYIPLTSTLEGFVILKKNPEYHEE 288
            LL  GERAEL  D+YI L+STLEG VIL+KNP++  E
Sbjct: 846  LLGYGERAELEDDQYISLSSTLEGLVILRKNPDWEGE 882

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
            non-ATPase subunit mts4) (19S regulatory cap region of
            26S protease subunit 2)
          Length = 891

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 50/91 (54%), Positives = 59/91 (64%)
 Frame = -2

Query: 572  HYILYIIVLAMQPRMLLTVDEDLKPLXXXXXXXXXXXXXXXXXRPKTITGFQTHTTPVLL 393
            H++LY I LA++PRML+T+ ED + L                 RPK ITG+ THTTPVLL
Sbjct: 796  HWLLYAITLAIRPRMLITLGEDGQYLPVSVRVGQAVDVVGQAGRPKVITGWVTHTTPVLL 855

Query: 392  AAGERAELATDKYIPLTSTLEGFVILKKNPE 300
               ERAELAT+ Y PLTS LEG VILKKN E
Sbjct: 856  HHNERAELATEAYTPLTS-LEGIVILKKNTE 885

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
            non-ATPase subunit 1)
          Length = 992

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 42/97 (43%), Positives = 61/97 (62%)
 Frame = -2

Query: 578  KYHYILYIIVLAMQPRMLLTVDEDLKPLXXXXXXXXXXXXXXXXXRPKTITGFQTHTTPV 399
            K+H + Y++   ++P+ +L ++++ +P+                 RPK ITG+ T +TPV
Sbjct: 895  KHHQLFYMLNAGIRPKFILALNDEGEPIKVNVRVGQAVETVGQAGRPKKITGWITQSTPV 954

Query: 398  LLAAGERAELATDKYIPLTSTLEGFVILKKNPEYHEE 288
            LL  GERAEL TD+YI  TS +EG VILKKNP+Y EE
Sbjct: 955  LLNHGERAELETDEYISYTSHIEGVVILKKNPDYREE 991

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 39/97 (40%), Positives = 60/97 (61%)
 Frame = -2

Query: 578  KYHYILYIIVLAMQPRMLLTVDEDLKPLXXXXXXXXXXXXXXXXXRPKTITGFQTHTTPV 399
            K+H + Y++   ++P+ ++T++E+ + +                 +PKTITG+ T +TPV
Sbjct: 886  KHHQLFYMLNSGVRPKFIITLNEEGEQIKVNVRIGQAVETVGQAGKPKTITGWITQSTPV 945

Query: 398  LLAAGERAELATDKYIPLTSTLEGFVILKKNPEYHEE 288
            LL  GERAEL  D+YI  T+ +EG VILKKNP + EE
Sbjct: 946  LLGHGERAELENDEYISYTNNIEGVVILKKNPNFQEE 982

>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
 Frame = +2

Query: 329 PPTWRSGECTCQSPILLAPP---------------LQARQEWYASESR*LS*VFLPVQPH 463
           PP W S    C SP+++A P               L  + +W   +    S  FL +QP 
Sbjct: 156 PPPWPS-RSVCSSPVMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPS 214

Query: 464 QLLAQPALEQEEASDPHPPLKASLAASP 547
           +++ QP    ++     PPL     + P
Sbjct: 215 EVIYQPVEIAQDGGCVPPPLSLMETSVP 242

>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
 Frame = +2

Query: 329 PPTWRSGECTCQSPILLAPP---------------LQARQEWYASESR*LS*VFLPVQPH 463
           PP W S    C SP+++A P               L  + +W   +    S  FL +QP 
Sbjct: 156 PPPWPS-RSVCSSPVMVAQPIYQQPAYHYQATAQYLPGQWQWSVPQPPASSAPFLYLQPS 214

Query: 464 QLLAQPALEQEEASDPHPPLKASLAASP 547
           +++ QP    ++     PPL     + P
Sbjct: 215 EVIYQPVEIAQDGGCVPPPLSLMETSVP 242

>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 634

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 121 CN*LQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICI 2
           CN  +S LV   D     TH+G  +GV    SF  +L+C+
Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCL 425

>GLAS_DROME (P13360) Protein glass|
          Length = 604

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 296 GIPGSSSELQ-SPPTWRSGECTCQSPI-LLAPPLQARQEWYASESR*LS*VFLPVQPHQL 469
           G+P   S++  +PP+  +      + + +L PPL +   + AS +   +  F    P  L
Sbjct: 297 GVPMQCSQMNWTPPSNSTSAAAAAAAVNVLYPPLLSPGHYPASATYSFTADFRAPAPTGL 356

Query: 470 LAQPALEQEEASDPHPPLKASLA 538
            A P L   E   P PP  +SLA
Sbjct: 357 GALPPLTVGEKESPSPPANSSLA 379

>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
 Frame = +2

Query: 329 PPTWRSGECTCQSPILLAPP---------------LQARQEWYASESR*LS*VFLPVQPH 463
           PP+W S   +  SP+++A P               L  + +W   +S   S  FL +QP 
Sbjct: 156 PPSWPSRSIS-SSPVMVAQPVYQQPAYHYQAPAQCLPGQWQWGVPQSPASSAPFLYLQPS 214

Query: 464 QLLAQPALEQEEASDPHPPLKASLAASP 547
           +++ QP    ++     PPL     + P
Sbjct: 215 EVIYQPVEIAQDGGCVPPPLSLMETSVP 242

>KR195_HUMAN (Q3LI72) Keratin-associated protein 19-5|
          Length = 72

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 205 DDNLYLRACHAGELQKLASDQSLGGFPHSSWYSGFFFRITKPS 333
           DD  Y   C  G  ++L      GG+ + S + G+ +R  +PS
Sbjct: 19  DDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPS 61

>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor|
          Length = 1700

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 308  SSSELQSPPTWRSGECTCQSPILLAPP 388
            +  +  SP TW    C+CQ P  + PP
Sbjct: 1391 AQKKCDSPKTWDENSCSCQCPKNMRPP 1417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,145,371
Number of Sequences: 219361
Number of extensions: 2044326
Number of successful extensions: 5878
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5874
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)