>MYCS_MOUSE (Q9Z304) Protein S-myc|
          Length = 431

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +1

Query: 4   QXAPRTKPSKSYNCSFPP--PAQASKKLKWNSSIDDQKKERNHALLRQHLEINRHNRMPS 177
           Q  PR+  S +  C F P  P   S+K   NS  ++ ++ RNH      +E  R + M S
Sbjct: 314 QKKPRSHTSLALKCVFRPKAPRLGSRK---NSDWENIERRRNH----NRMERQRRDIMRS 366

Query: 178 QFLTKRTLTKQSGMNAKQCKCERKKK 255
            FL  R L  +   N K  K    KK
Sbjct: 367 SFLNLRDLVPELVHNEKAAKVVILKK 392

>MYCN_MOUSE (P03966) N-myc proto-oncogene protein|
          Length = 462

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = +1

Query: 4   QXAPRTKPSKSYNCSFP----PPAQASKKLKWNSSIDDQKKERNHALLRQHLEINRHNRM 171
           + AP  K  KS     P     PA+A      NS  +D ++ RNH +    LE  R N +
Sbjct: 340 EDAPPQKKIKSEASPRPLKSVVPAKAKSLSPRNSDSEDSERRRNHNI----LERQRRNDL 395

Query: 172 PSQFLTKRTLTKQSGMNAKQCKCERKKK 255
            S FLT R    +   N K  K    KK
Sbjct: 396 RSSFLTLRDHVPELVKNEKAAKVVILKK 423

>K0553_HUMAN (Q9UKJ3) Protein KIAA0553|
          Length = 1089

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 112 KERNHALLRQHLEINRHNRMPSQFLTKRTLTKQSGMNAKQCKCERKKK----LPAQEEHV 279
           K   H   ++H + ++H R P     +++   +SG  +K+ K  ++KK     PA  E  
Sbjct: 258 KSHRHKKKKEHKKSSKHKRKPKADTEEKSSKAESGEKSKKRKKRKRKKNKSSAPADSERG 317

Query: 280 PHGE 291
           P  E
Sbjct: 318 PKPE 321

>FTSK_CLOPE (Q8XJS8) DNA translocase ftsK|
          Length = 796

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = +1

Query: 91  SSIDDQKKERNHALLRQHLEIN---RHNRMPSQFLTKRTLTKQSGMNAKQCKCE 243
           + I+D KKE+++ L + +++IN   + ++MP       T+ +Q G N+++ K E
Sbjct: 247 NDIEDNKKEKDNQL-KDNIKINDFKQESKMPRDLSLDNTIIEQRGFNSEKAKEE 299

>S6A20_HUMAN (Q9NP91) Sodium- and chloride-dependent transporter XTRP3 (Solute|
           carrier family 6 member 20) (Neurotransmitter
           transporter rB21A homolog)
          Length = 592

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 485 YQWSVGVASMLMVWVLSLYLASIACIELWSYGHSLKGPIAYS 360
           Y   VGVAS+++ + LS+Y   I     W   HS + P+ +S
Sbjct: 83  YLSGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPWS 124

>S6A20_MOUSE (O88575) Sodium- and chloride-dependent transporter XTRP3 (Solute|
           carrier family 6 member 20)
          Length = 635

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 485 YQWSVGVASMLMVWVLSLYLASIACIELWSYGHSLKGPIAYS 360
           Y   VG+AS+++ ++ S+Y   I    LW   HS + P+ +S
Sbjct: 126 YLSGVGIASLVVSFLASVYFNVINTWALWYLFHSFQDPLPWS 167

>S6A20_RAT (Q64093) Sodium- and chloride-dependent transporter XTRP3 (Solute|
           carrier family 6 member 20) (Neurotransmitter
           transporter rB21A)
          Length = 616

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 485 YQWSVGVASMLMVWVLSLYLASIACIELWSYGHSLKGPIAYS 360
           Y   VGVAS+++ + LS+Y   I     W   HS + P+ +S
Sbjct: 107 YLSGVGVASVVVSFFLSMYYNVINAWGFWYLFHSFQDPLPWS 148

>TAO1A_XENLA (Q6NU21) Serine/threonine-protein kinase TAO1-A (EC 2.7.11.1)|
           (Thousand and one amino acid protein 1-A)
          Length = 1001

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 64  QASKKLKWNSSIDDQKKERNHALLRQHLEINR--HNRMPSQFLTKRTLTKQSGMNAKQCK 237
           QA+ + +  S  +D+KK + H   +Q  E+N    ++     L K  L ++   N    K
Sbjct: 519 QAAMEKELKSIANDEKKFQQHIQAQQKKELNNFLESQKREYKLRKEQLKEELNENQSTPK 578

Query: 238 CERKKKLPAQEEHVPH 285
            E+++ L  Q+E+  H
Sbjct: 579 KEKQEWLSKQKENFQH 594


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,230,604
Number of Sequences: 219361
Number of extensions: 2034587
Number of successful extensions: 5282
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5279
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)