ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1B4GT7_HUMAN (Q9UBV7) Beta-1,4-galactosyltransferase 7 (EC 2.4.1.... 33 0.67
2KPYK_SCHPO (Q10208) Pyruvate kinase (EC 2.7.1.40) (PK) 30 5.7
3OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinas... 30 7.4
4SLAF9_MOUSE (Q9D780) SLAM family member 9 precursor 29 9.7

>B4GT7_HUMAN (Q9UBV7) Beta-1,4-galactosyltransferase 7 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 7) (Beta4Gal-T7) (b4Gal-T7)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 7) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 7) [Includes: X
          Length = 327

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 437 SNRQARTLPWPACVAGDGEGTVERR---LHFFSAALRSGIFSMPLSMSGCTSDLARS 598
           S R+A  LPW    +G   G + R+    H F A L  G FS+      C+ D+AR+
Sbjct: 4   SRRKAAQLPWEDGRSGLLSGGLPRKCSVFHLFVACLSLGFFSLLWLQLSCSGDVARA 60



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>KPYK_SCHPO (Q10208) Pyruvate kinase (EC 2.7.1.40) (PK)|
          Length = 509

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -1

Query: 496 PLAIASNASGPRQRPCLPVG*N*KSVI--HTSVVILLEVYVQFCH*IPMYSKYRSLRWFR 323
           PLAIA +  GP  R  L VG     +   H  +    + Y + C+   MY  Y+++    
Sbjct: 85  PLAIALDTKGPEIRTGLTVGGTDYPISSGHEMIFTTDDAYAEKCNDKVMYIDYKNI---T 141

Query: 322 SILVTGEVIFV*CGI-SLTV 266
            ++  G +I+V  GI S TV
Sbjct: 142 KVIQPGRIIYVDDGILSFTV 161



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>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)|
            (Obscurin-MLCK) (Obscurin-RhoGEF)
          Length = 7968

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 595  SCEIRGAAAHRQWHTEDSRP*SSGEEVKSSLDGPLA 488
            SC+ R A    QW+ +D+ P S  E+ K SL+G +A
Sbjct: 2489 SCDFRPAPKAVQWYKDDT-PLSPSEKFKMSLEGQMA 2523



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>SLAF9_MOUSE (Q9D780) SLAM family member 9 precursor|
          Length = 285

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 383 CSILSLNTNVLEIQXXXXXXVNTCHWGGYIRVMWHKFDRSPSHLSR 246
           CSI     +V  I        NT H G  +   W   D++PS+  R
Sbjct: 154 CSIERAGMDVTYIWLSSQDSTNTSHEGSVLSTSWRPGDKAPSYTCR 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,725,677
Number of Sequences: 219361
Number of extensions: 1652792
Number of successful extensions: 3513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3511
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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