ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065941.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
2dbj|AB053474.1| Oryza sativa mRNA for RISBZ5, complete cds 92 2e-15
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5gb|BT016708.1| Zea mays clone Contig541 mRNA sequence 70 9e-09
6ref|XM_675309.1| Plasmodium berghei strain ANKA hypothetical pro... 44 0.52
7ref|NM_105744.2| Arabidopsis thaliana unknown protein AT1G70760 ... 42 2.1
8ref|XM_464322.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
9gb|AF124842.1| Capsicum annuum squalene synthase (SS) mRNA, comp... 42 2.1
10gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosom... 42 2.1
11gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosom... 42 2.1
12gb|BT010638.1| Arabidopsis thaliana At1g70760 gene, complete cds 42 2.1
13emb|AL137804.7| Human DNA sequence from clone RP1-296L11 on chro... 42 2.1
14emb|AJ001265.1|OSRITA2PR Oryza sativa mRNA for RITA-2 protein, p... 42 2.1
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16emb|BX817638.1|CNS0AB3Z Arabidopsis thaliana Full-length cDNA Co... 42 2.1
17gb|AY995183.1| Datura innoxia squalene synthase mRNA, partial cds 42 2.1
18gb|AC011663.7|AC011663 Arabidopsis thaliana chromosome 1 BAC F5A... 42 2.1
19gb|AC093756.3| Homo sapiens BAC clone RP11-56A1 from 2, complete... 42 2.1
20dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
21dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
22emb|AJ001266.1|OSRITA2GN Oryza sativa rita-2 gene, plasmid pBC659 42 2.1
23dbj|AK069575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
24gb|AC008148.2|AC008148 Arabidopsis thaliana chromosome I BAC F15... 42 2.1
25dbj|AB053473.1| Oryza sativa mRNA for RISBZ4, complete cds 42 2.1
26ref|XM_863943.1| PREDICTED: Bos taurus similar to Chibby protein... 40 8.1
27gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, comp... 40 8.1
28gb|AC138667.8| Mus musculus chromosome 14, clone RP24-122H16, co... 40 8.1
29emb|AL360298.14| Human DNA sequence from clone RP11-39H13 on chr... 40 8.1
30emb|AL135790.7| Human DNA sequence from clone RP11-87N24 on chro... 40 8.1
31emb|AL022316.2|HS126B4 Human DNA sequence from clone CTA-126B4 o... 40 8.1
32gb|AC153876.8| Mus musculus 10 BAC RP23-218D7 (Roswell Park Canc... 40 8.1
33gb|AC096648.1| Homo sapiens BAC clone RP11-11C17 from 2, complet... 40 8.1
34gb|AC102478.16| Mus musculus chromosome 5, clone RP24-407H12, co... 40 8.1
35emb|AL935028.14| Zebrafish DNA sequence from clone XX-95K20, com... 40 8.1
36dbj|AB022599.1| Solanum tuberosum PSS1 mRNA for squalene synthas... 40 8.1
37emb|AL627076.14| Mouse DNA sequence from clone RP23-402I22 on ch... 40 8.1 
>dbj|AK065941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049M10, full
           insert sequence
          Length = 1605

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 153/188 (81%), Gaps = 3/188 (1%)
 Strand = Plus / Minus

                                                                       
Query: 410 cacatcttcctggagttgagaaatggtgccaacccaagctgctgtcctaggccgcaggac 469
           ||||||||||||||| |||| ||||| |||| ||| |||||    || ||||| || |||
Sbjct: 734 cacatcttcctggagctgagcaatggcgccagcccgagctgg---cccaggccacacgac 678

                                                                       
Query: 470 actgcgcctctagctaccatgtcttctgccatttttaccttgattcttaaagtctctaca 529
           |  ||| | || || ||||||||||| ||||| || ||||||| |||||| | |||||||
Sbjct: 677 atcgcggccctcgcgaccatgtcttcagccatcttgaccttgactcttaaggcctctaca 618

                                                                       
Query: 530 tctgatttcaggatcctgttgtcggtgactgcggtggtgaactgctggttggcctctgtc 589
           || ||||| |||||||||||||| ||||| || ||  ||||||||||| ||| |||||| 
Sbjct: 617 tccgatttgaggatcctgttgtccgtgaccgctgtattgaactgctggctggactctgtg 558

                   
Query: 590 agttgctt 597
           || |||||
Sbjct: 557 agctgctt 550
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>dbj|AB053474.1| Oryza sativa mRNA for RISBZ5, complete cds
          Length = 1374

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 153/188 (81%), Gaps = 3/188 (1%)
 Strand = Plus / Minus

                                                                       
Query: 410 cacatcttcctggagttgagaaatggtgccaacccaagctgctgtcctaggccgcaggac 469
           ||||||||||||||| |||| ||||| |||| ||| |||||    || ||||| || |||
Sbjct: 730 cacatcttcctggagctgagcaatggcgccagcccgagctgg---cccaggccacacgac 674

                                                                       
Query: 470 actgcgcctctagctaccatgtcttctgccatttttaccttgattcttaaagtctctaca 529
           |  ||| | || || ||||||||||| ||||| || ||||||| |||||| | |||||||
Sbjct: 673 atcgcggccctcgcgaccatgtcttcagccatcttgaccttgactcttaaggcctctaca 614

                                                                       
Query: 530 tctgatttcaggatcctgttgtcggtgactgcggtggtgaactgctggttggcctctgtc 589
           || ||||| |||||||||||||| ||||| || ||  ||||||||||| ||| |||||| 
Sbjct: 613 tccgatttgaggatcctgttgtccgtgaccgctgtattgaactgctggctggactctgtg 554

                   
Query: 590 agttgctt 597
           || |||||
Sbjct: 553 agctgctt 546
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Plus

                                                                            
Query: 504      ttaccttgattcttaaagtctctacatctgatttcaggatcctgttgtcggtgactgcgg 563
                ||||||||| |||||| | ||||||||| ||||| |||||||||||||| ||||| || |
Sbjct: 26917495 ttaccttgactcttaaggcctctacatccgatttgaggatcctgttgtccgtgaccgctg 26917554

                                                  
Query: 564      tggtgaactgctggttggcctctgtcagttgctt 597
                |  ||||||||||| ||| |||||| || |||||
Sbjct: 26917555 tattgaactgctggctggactctgtgagctgctt 26917588



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 410      cacatcttcctggagttgagaaatggtgccaacccaagctg 450
                ||||||||||||||| |||| ||||| |||| ||| |||||
Sbjct: 26917150 cacatcttcctggagctgagcaatggcgccagcccgagctg 26917190
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>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0065C04
          Length = 165270

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Plus

                                                                         
Query: 504   ttaccttgattcttaaagtctctacatctgatttcaggatcctgttgtcggtgactgcgg 563
             ||||||||| |||||| | ||||||||| ||||| |||||||||||||| ||||| || |
Sbjct: 41256 ttaccttgactcttaaggcctctacatccgatttgaggatcctgttgtccgtgaccgctg 41315

                                               
Query: 564   tggtgaactgctggttggcctctgtcagttgctt 597
             |  ||||||||||| ||| |||||| || |||||
Sbjct: 41316 tattgaactgctggctggactctgtgagctgctt 41349



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 410   cacatcttcctggagttgagaaatggtgccaacccaagctg 450
             ||||||||||||||| |||| ||||| |||| ||| |||||
Sbjct: 40911 cacatcttcctggagctgagcaatggcgccagcccgagctg 40951
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>gb|BT016708.1| Zea mays clone Contig541 mRNA sequence
          Length = 1331

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 539 aggatcctgttgtcggtgactgcggtggtgaactgctggttggcctctgtcagttgctt 597
           |||||||||||||| ||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct: 630 aggatcctgttgtccgtgaccgcggtcgtgaactgctggttggcgtccgtcagctgctt 572
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>ref|XM_675309.1| Plasmodium berghei strain ANKA hypothetical protein (PB001269.02.0)
            partial mRNA
          Length = 1152

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 95   atacagaacacataatagtttcacta 120
            |||||||| |||||||||||||||||
Sbjct: 1048 atacagaatacataatagtttcacta 1023
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>ref|NM_105744.2| Arabidopsis thaliana unknown protein AT1G70760 mRNA, complete cds
          Length = 1300

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 415 cttcctggagttgagaaatggtgcc 439
           ||||||| |||||||||||||||||
Sbjct: 496 cttcctgaagttgagaaatggtgcc 472
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>ref|XM_464322.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1149

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 530 tctgatttcaggatcctgttgtcggtgactgcggtggtgaactgctggttggc 582
           |||||||| ||||| |||||||| ||||| |  || ||||| |||||||||||
Sbjct: 683 tctgatttgaggattctgttgtccgtgacagaagttgtgaattgctggttggc 631
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>gb|AF124842.1| Capsicum annuum squalene synthase (SS) mRNA, complete cds
          Length = 1647

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 385 catggtcaccaaggctttgtcacat 409
           |||||||||||| ||||||||||||
Sbjct: 894 catggtcaccaatgctttgtcacat 918
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>gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosome 18, complete
             sequence
          Length = 204727

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 106   ataatagtttcactactttcagagttttg 134
             |||||| |||||||||||| |||||||||
Sbjct: 32111 ataatattttcactacttttagagttttg 32083
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>gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosome 18, complete
             sequence
          Length = 166948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 106   ataatagtttcactactttcagagttttg 134
             |||||| |||||||||||| |||||||||
Sbjct: 30969 ataatattttcactacttttagagttttg 30997
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>gb|BT010638.1| Arabidopsis thaliana At1g70760 gene, complete cds
          Length = 576

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 415 cttcctggagttgagaaatggtgcc 439
           ||||||| |||||||||||||||||
Sbjct: 459 cttcctgaagttgagaaatggtgcc 435
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>emb|AL137804.7| Human DNA sequence from clone RP1-296L11 on chromosome 11p13-14.1
             Contains STSs, GSSs and CpG islands, complete sequence
          Length = 107499

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 342   agagtgcatggttcactggca 362
             |||||||||||||||||||||
Sbjct: 32530 agagtgcatggttcactggca 32550
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>emb|AJ001265.1|OSRITA2PR Oryza sativa mRNA for RITA-2 protein, plasmid pBC663
          Length = 875

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 530 tctgatttcaggatcctgttgtcggtgactgcggtggtgaactgctggttggc 582
           |||||||| ||||| |||||||| ||||| |  || ||||| |||||||||||
Sbjct: 326 tctgatttgaggattctgttgtccgtgacagaagttgtgaattgctggttggc 274
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                    
Query: 530     tctgatttcaggatcctgttgtcggtgactgcggtggtgaactgctggttggc 582
               |||||||| ||||| |||||||| ||||| |  || ||||| |||||||||||
Sbjct: 4112087 tctgatttgaggattctgttgtccgtgacagaagttgtgaattgctggttggc 4112035
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>emb|BX817638.1|CNS0AB3Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL34ZC10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 756

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 415 cttcctggagttgagaaatggtgcc 439
           ||||||| |||||||||||||||||
Sbjct: 471 cttcctgaagttgagaaatggtgcc 447
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>gb|AY995183.1| Datura innoxia squalene synthase mRNA, partial cds
          Length = 1161

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 385 catggtcaccaaggctttgtcacat 409
           |||||||||||| ||||||||||||
Sbjct: 705 catggtcaccaatgctttgtcacat 729
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>gb|AC011663.7|AC011663 Arabidopsis thaliana chromosome 1 BAC F5A18 genomic sequence, complete
             sequence
          Length = 108582

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 415   cttcctggagttgagaaatggtgcc 439
             ||||||| |||||||||||||||||
Sbjct: 16506 cttcctgaagttgagaaatggtgcc 16530
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>gb|AC093756.3| Homo sapiens BAC clone RP11-56A1 from 2, complete sequence
          Length = 158073

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    aaccaatatacagaacacata 108
             |||||||||||||||||||||
Sbjct: 83157 aaccaatatacagaacacata 83137
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>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_E05
          Length = 116305

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 530   tctgatttcaggatcctgttgtcggtgactgcggtggtgaactgctggttggc 582
             |||||||| ||||| |||||||| ||||| |  || ||||| |||||||||||
Sbjct: 22101 tctgatttgaggattctgttgtccgtgacagaagttgtgaattgctggttggc 22049
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>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0073A21
          Length = 170051

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                   
Query: 530    tctgatttcaggatcctgttgtcggtgactgcggtggtgaactgctggttggc 582
              |||||||| ||||| |||||||| ||||| |  || ||||| |||||||||||
Sbjct: 158753 tctgatttgaggattctgttgtccgtgacagaagttgtgaattgctggttggc 158701
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>emb|AJ001266.1|OSRITA2GN Oryza sativa rita-2 gene, plasmid pBC659
          Length = 538

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 530 tctgatttcaggatcctgttgtcggtgactgcggtggtgaactgctggttggc 582
           |||||||| ||||| |||||||| ||||| |  || ||||| |||||||||||
Sbjct: 364 tctgatttgaggattctgttgtccgtgacagaagttgtgaattgctggttggc 312
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>dbj|AK069575.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025A18, full
           insert sequence
          Length = 1149

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 530 tctgatttcaggatcctgttgtcggtgactgcggtggtgaactgctggttggc 582
           |||||||| ||||| |||||||| ||||| |  || ||||| |||||||||||
Sbjct: 683 tctgatttgaggattctgttgtccgtgacagaagttgtgaattgctggttggc 631
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>gb|AC008148.2|AC008148 Arabidopsis thaliana chromosome I BAC F15H11 genomic sequence,
            complete sequence
          Length = 110514

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 415  cttcctggagttgagaaatggtgcc 439
            ||||||| |||||||||||||||||
Sbjct: 5684 cttcctgaagttgagaaatggtgcc 5660
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>dbj|AB053473.1| Oryza sativa mRNA for RISBZ4, complete cds
          Length = 1210

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 530 tctgatttcaggatcctgttgtcggtgactgcggtggtgaactgctggttggc 582
           |||||||| ||||| |||||||| ||||| |  || ||||| |||||||||||
Sbjct: 725 tctgatttgaggattctgttgtccgtgacagaagttgtgaattgctggttggc 673
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>ref|XM_863943.1| PREDICTED: Bos taurus similar to Chibby protein (PKD2 interactor,
           Golgi and endoplasmic reticulum associated 1) (PIGEA-14)
           (Cytosolic leucine-rich protein) (HRIHFB2025)
           (LOC613311), mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 443 ccaagctgctgtcctaggcc 462
           ||||||||||||||||||||
Sbjct: 29  ccaagctgctgtcctaggcc 10
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>gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, complete sequence
          Length = 246249

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   tgattcttaaagtctctaca 529
             ||||||||||||||||||||
Sbjct: 74215 tgattcttaaagtctctaca 74196
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>gb|AC138667.8| Mus musculus chromosome 14, clone RP24-122H16, complete sequence
          Length = 177623

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   tcttcctggagttgagaaat 433
             ||||||||||||||||||||
Sbjct: 92033 tcttcctggagttgagaaat 92014
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>emb|AL360298.14| Human DNA sequence from clone RP11-39H13 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 107835

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 499   catttttaccttgattcttaaagt 522
             ||||||| ||||||||||||||||
Sbjct: 51554 cattttttccttgattcttaaagt 51531
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>emb|AL135790.7| Human DNA sequence from clone RP11-87N24 on chromosome 9p22.1-23 Contains
              a ribosomal protein S12 (RPS12) pseudogene, 2 novel genes,
              the 5' end of a variant of the PTPRD gene for protein
              tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD).
              and a CpG island, complete sequence
          Length = 176273

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 48     tgaatatgaacctcaatacatatg 71
              |||||||||| |||||||||||||
Sbjct: 159455 tgaatatgaaactcaatacatatg 159432
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>emb|AL022316.2|HS126B4 Human DNA sequence from clone CTA-126B4 on chromosome 22q13.2-13.31,
             complete sequence
          Length = 156212

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   gtcagggccagccagctgca 240
             ||||||||||||||||||||
Sbjct: 70129 gtcagggccagccagctgca 70148
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>gb|AC153876.8| Mus musculus 10 BAC RP23-218D7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 217077

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 109   atagtttcactactttcagagttt 132
             ||||||||| ||||||||||||||
Sbjct: 78339 atagtttcattactttcagagttt 78316
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>gb|AC096648.1| Homo sapiens BAC clone RP11-11C17 from 2, complete sequence
          Length = 24461

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   tgaaggccctgttatggtgt 216
             ||||||||||||||||||||
Sbjct: 15398 tgaaggccctgttatggtgt 15417
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>gb|AC102478.16| Mus musculus chromosome 5, clone RP24-407H12, complete sequence
          Length = 153971

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 319    gagctagagctagaaacctc 338
              ||||||||||||||||||||
Sbjct: 139429 gagctagagctagaaacctc 139448
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>emb|AL935028.14| Zebrafish DNA sequence from clone XX-95K20, complete sequence
          Length = 78340

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    attacagaactaatgaacag 30
             ||||||||||||||||||||
Sbjct: 44218 attacagaactaatgaacag 44199
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>dbj|AB022599.1| Solanum tuberosum PSS1 mRNA for squalene synthase, complete cds
          Length = 1662

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 386 atggtcaccaaggctttgtcacat 409
           ||||||||||| ||||||||||||
Sbjct: 910 atggtcaccaatgctttgtcacat 933
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>emb|AL627076.14| Mouse DNA sequence from clone RP23-402I22 on chromosome 4, complete
             sequence
          Length = 163353

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   ttaaagtctctacatctgat 535
             ||||||||||||||||||||
Sbjct: 73582 ttaaagtctctacatctgat 73601


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,077,938
Number of Sequences: 3902068
Number of extensions: 5077938
Number of successful extensions: 96463
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96367
Number of HSP's gapped (non-prelim): 96
length of query: 597
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 574
effective length of database: 17,143,297,704
effective search space: 9840252882096
effective search space used: 9840252882096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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