Clone Information

BLAST Search Result

Clone Name	rbags18m07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SPA2_STAAU (P38507) Immunoglobulin G-binding protein A precursor...	37	0.061
2	SPA_STAAN (P99134) Immunoglobulin G binding protein A precursor ...	34	0.39
3	SPA_STAAM (P0A015) Immunoglobulin G binding protein A precursor ...	34	0.39
4	BRE1_KLULA (Q6CWM4) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	33	0.51
5	ARFK_ARATH (Q9ZPY6) Auxin response factor 11	33	0.67
6	TRUC_PECCC (Q47417) tRNA pseudouridine synthase C (EC 5.4.99.-) ...	32	1.1
7	TALA_POVMC (P12905) Large T antigen	32	1.1
8	DBF2_YEAST (P22204) Cell cycle protein kinase DBF2 (EC 2.7.11.1)	32	1.5
9	DBP10_CRYNE (Q5KMS9) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)	32	1.9
10	RUVA_CLOPE (Q8XJ13) Holliday junction ATP-dependent DNA helicase...	31	2.5
11	SYL_BACLD (Q65FX8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-...	31	2.5
12	NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neur...	30	4.3
13	MUTS_PHOPR (Q6LMU0) DNA mismatch repair protein mutS	30	4.3
14	MRAW_MYCGA (Q7NB79) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)	30	4.3
15	TRYP_STREX (P80420) Trypsin-like protease precursor (EC 3.4.21.-)	30	4.3
16	MUTS2_CLOTE (Q891U1) MutS2 protein	30	4.3
17	PSAB_YERPS (P69966) Chaperone protein psaB precursor	30	4.3
18	PSAB_YERPE (P69965) Chaperone protein psaB precursor	30	4.3
19	LGE1_ASHGO (Q75A59) Transcriptional regulatory protein LGE1	30	5.7
20	MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma ...	30	5.7
21	SYNG_MOUSE (Q5SV85) AP1 gamma subunit-binding protein 1 (Gamma-s...	30	5.7
22	GOGA2_HUMAN (Q08379) Golgin subfamily A member 2 (Cis-Golgi matr...	30	5.7
23	GGA3_MOUSE (Q8BMI3) ADP-ribosylation factor-binding protein GGA3...	30	5.7
24	SYA_RHOBA (Q7UFH9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-...	30	7.4
25	RUVA_PROAC (Q6A8K8) Holliday junction ATP-dependent DNA helicase...	30	7.4
26	PGK_KLULA (P14828) Phosphoglycerate kinase (EC 2.7.2.3)	30	7.4
27	MYS2_DICDI (P08799) Myosin-2 heavy chain, non muscle (Myosin II ...	30	7.4
28	MYG_CERMN (Q7LZM4) Myoglobin	30	7.4
29	MYG_AETPY (Q7LZM5) Myoglobin	30	7.4
30	SYFA_LEPIN (Q8EYR3) Phenylalanyl-tRNA synthetase alpha chain (EC...	30	7.4
31	SYFA_LEPIC (Q72M80) Phenylalanyl-tRNA synthetase alpha chain (EC...	30	7.4
32	GLNE_CAUCR (Q9A4S7) Glutamate-ammonia-ligase adenylyltransferase...	29	9.7
33	BAG7_YEAST (Q12128) Rho-GTPase-activating protein BAG7	29	9.7
34	LRFN2_MACFA (Q9BE71) Leucine-rich repeat and fibronectin type-II...	29	9.7
35	LRFN2_HUMAN (Q9ULH4) Leucine-rich repeat and fibronectin type-II...	29	9.7
36	MARK3_HUMAN (P27448) MAP/microtubule affinity-regulating kinase ...	29	9.7
37	DPOG1_CHICK (Q92076) DNA polymerase gamma subunit 1 (EC 2.7.7.7)...	29	9.7
38	MYG_APTFO (P02199) Myoglobin	29	9.7
39	NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurof...	29	9.7
40	SYNG_RAT (Q9JKC9) AP1 gamma subunit-binding protein 1 (Gamma-syn...	29	9.7

>SPA2_STAAU (P38507) Immunoglobulin G-binding protein A precursor (IgG-binding|
           protein A) (Staphylococcal protein A)
          Length = 508

 Score = 36.6 bits (83), Expect = 0.061
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 2/163 (1%)
 Frame = -3

Query: 571 RMKIIAQLKANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPVL-EKASK 395
           R   I  LK +     N +   ++    + P A+ K  +E  +A  + L  P L E+   
Sbjct: 238 RNGFIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHLPNLTEEQRN 297

Query: 394 AVWELILDNGGLGKEITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNM-AVEEGQKDM 218
              + + D+  + KEI    +K+              + + AP+E+  N    E+G K  
Sbjct: 298 GFIQSLKDDPSVSKEILAEAKKL--------------NDAQAPKEEDNNKPGKEDGNKPG 343

Query: 217 EMDASEPSSSSRKRPFSDINVKGAGAIPNGGATYQHDGHEDGN 89
           + D ++P     K+P  +   K       G    +  G EDGN
Sbjct: 344 KEDGNKPGKEDNKKPGKEDGNK------PGKEDNKKPGKEDGN 380

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>SPA_STAAN (P99134) Immunoglobulin G binding protein A precursor (IgG binding|
           protein A) (Staphylococcal protein A)
          Length = 450

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 2/163 (1%)
 Frame = -3

Query: 571 RMKIIAQLKANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPVL-EKASK 395
           R   I  LK +     N +   ++    + P A+ K  +E  +A  + L  P L E+   
Sbjct: 180 RNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEILHLPNLNEEQRN 239

Query: 394 AVWELILDNGGLGKEITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNM-AVEEGQKDM 218
              + + D+  + KEI    +K+              + + AP+E+       E+G K  
Sbjct: 240 GFIQSLKDDPSVSKEILAEAKKL--------------NDAQAPKEEDNKKPGKEDGNKPG 285

Query: 217 EMDASEPSSSSRKRPFSDINVKGAGAIPNGGATYQHDGHEDGN 89
           + D ++P     K+P  +   K       G       G EDGN
Sbjct: 286 KEDGNKPGKEDNKKPGKEDGNK------PGKEDNNKPGKEDGN 322

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>SPA_STAAM (P0A015) Immunoglobulin G binding protein A precursor (IgG binding|
           protein A) (Staphylococcal protein A)
          Length = 450

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 2/163 (1%)
 Frame = -3

Query: 571 RMKIIAQLKANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPVL-EKASK 395
           R   I  LK +     N +   ++    + P A+ K  +E  +A  + L  P L E+   
Sbjct: 180 RNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEILHLPNLNEEQRN 239

Query: 394 AVWELILDNGGLGKEITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNM-AVEEGQKDM 218
              + + D+  + KEI    +K+              + + AP+E+       E+G K  
Sbjct: 240 GFIQSLKDDPSVSKEILAEAKKL--------------NDAQAPKEEDNKKPGKEDGNKPG 285

Query: 217 EMDASEPSSSSRKRPFSDINVKGAGAIPNGGATYQHDGHEDGN 89
           + D ++P     K+P  +   K       G       G EDGN
Sbjct: 286 KEDGNKPGKEDNKKPGKEDGNK------PGKEDNNKPGKEDGN 322

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>BRE1_KLULA (Q6CWM4) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 663

 Score = 33.5 bits (75), Expect = 0.51
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
 Frame = -3

Query: 568 MKIIAQLKANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPV--LEKASK 395
           MKI+     N  +KK+T  +  +++ L     E ++K +  D   ++L+  V   E  SK
Sbjct: 523 MKIVELTSENNKLKKSTERLESETRNLIGTKTELESKIKDKDIENKQLKIKVSSAEAKSK 582

Query: 394 AVWELILDNGGLGKEITETVEK----VFCRL 314
            +++ +L NGG    + E +E     ++C L
Sbjct: 583 KLYKTLLSNGGDNGALAEELENFRTIIYCSL 613

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>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -3

Query: 370 NGGLGKEITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSS 191
           + GL  +ITE      CRL G D+   PAS +  P +KQ  ++V+    D      +P+S
Sbjct: 419 SSGLQCKITEAPVTSSCRLFGFDLTSKPASAT-IPHDKQL-ISVDSNISDSTTKCQDPNS 476

Query: 190 SS 185
           S+
Sbjct: 477 SN 478

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>TRUC_PECCC (Q47417) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 376

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -3

Query: 454 ELFDALRQELETPVLEKASKAVWE-LILDNGGLGKEITETVEKVFCRLSGIDMMPPPAST 278
           E+  AL Q+ E+  ++K   AV    +LD+G +   +TE ++K+  + +  D  P PA T
Sbjct: 182 EVARALSQQFESHQMQKTYHAVVRGYVLDDGVIDYALTEELDKIADKFTNPDKAPQPAVT 241

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>TALA_POVMC (P12905) Large T antigen|
          Length = 777

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = -3

Query: 292 PPASTSGAPQEKQTNMAVEEGQKDMEMDASE-PSSSSRKRPFSDINVKGAGAIPNGGATY 116
           PP  T   P  ++ N  V E    +  D    P S  R RP       G G   NGG+ +
Sbjct: 151 PPTDTPAHPAGRRRNPCVAEPDDSISPDPPRTPVSRKRPRPAGATGGGGGGVHANGGSVF 210

Query: 115 QH 110
            H
Sbjct: 211 GH 212

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>DBF2_YEAST (P22204) Cell cycle protein kinase DBF2 (EC 2.7.11.1)|
          Length = 572

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 367 GGLGKEITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEE-GQKDMEMDASEPSS 191
           GG G    + + K   R +GI+  P P   S  P E  +NM ++E  Q DM++     S+
Sbjct: 28  GGTGLFPNQNITKRRTRPAGINDSPSPVKPSFFPYEDTSNMDIDEVSQPDMDV-----SN 82

Query: 190 SSRKRP 173
           S +K P
Sbjct: 83  SPKKLP 88

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>DBP10_CRYNE (Q5KMS9) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)|
          Length = 802

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 37/130 (28%), Positives = 51/130 (39%)
 Frame = -3

Query: 532 MKKNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPVLEKASKAVWELILDNGGLGK 353
           MKK    + E+ K +    AEK T   +  A  +EL  P L   +       LD+   G 
Sbjct: 551 MKKRRKTVDERQKRVSKAEAEKSTASGMEKAPVKELPAPQLPSKNFKDPSFYLDHTQRGA 610

Query: 352 EITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSSSRKRP 173
           E     EK +   SG++      S SGA     T+M  +EG       AS+ S   +K  
Sbjct: 611 E----AEKGYSLKSGVE------SLSGA----ITDMTADEGTGPKAQKASQLSWDRKKHK 656

Query: 172 FSDINVKGAG 143
           F   N    G
Sbjct: 657 FIKKNGSADG 666

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>RUVA_CLOPE (Q8XJ13) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 201

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -3

Query: 526 KNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPVLEKASKAVWELILDNGGLGKEI 347
           K  +MM ++  + + PG  KKT + +   L+ +L+   L      + E I DN      I
Sbjct: 99  KYAIMMGDEKHITRAPGIGKKTAQRIILELKDKLKPDELTSEEGQLIEGINDNSDYSFNI 158

Query: 346 TETV 335
            ET+
Sbjct: 159 NETL 162

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>SYL_BACLD (Q65FX8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 804

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
 Frame = -3

Query: 541 NEDMKKNTMMMVEQSKVLKTPGAEKKTKRELF----DALRQELETPVLEKASK---AVWE 383
           NE M K+   +V   ++++T GA+     E+F    DA      T  L+ A +    VW 
Sbjct: 574 NEKMSKSKGNVVNPDEIVETHGADTLRLYEMFMGPLDA-SIAWSTTGLDGARRFLDRVWR 632

Query: 382 LIL-DNGGLGKEIT----ETVEKVF 323
           L + DNGGL ++I     ET+E+V+
Sbjct: 633 LFIDDNGGLNEKIVEGAGETLERVY 657

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>NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 848

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 36/133 (27%), Positives = 55/133 (41%)
 Frame = -3

Query: 547 KANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPVLEKASKAVWELILDN 368
           K  E+ K+ T    ++ KV      EKK ++    A +++ E+PV EKA   V E+I   
Sbjct: 633 KVEEEKKEVTKESPKEEKV------EKKEEKPKDVADKKKAESPVKEKA---VEEVIT-- 681

Query: 367 GGLGKEITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSS 188
             + K +  ++EK                    PQEK    A EEG  + E     P  S
Sbjct: 682 --ISKSVKVSLEK------------DTKEEKPQPQEKVKEKAEEEGGSEEEGSDRSPQES 727

Query: 187 SRKRPFSDINVKG 149
            ++    DI + G
Sbjct: 728 KKE----DIAING 736

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>MUTS_PHOPR (Q6LMU0) DNA mismatch repair protein mutS|
          Length = 856

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 25/61 (40%), Positives = 33/61 (54%)
 Frame = -3

Query: 562 IIAQLKANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPVLEKASKAVWE 383
           II +LK +ED      ++  +SK L   G EKK   ELFD L   LE   L+ A+ A+ E
Sbjct: 503 IIPELKEHEDK-----VLSSKSKAL---GLEKKLWEELFDQLLPHLER--LQNAASALSE 552

Query: 382 L 380
           L
Sbjct: 553 L 553

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>MRAW_MYCGA (Q7NB79) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 317

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
 Frame = -3

Query: 616 EVLESLKNDGTVDALRMKIIAQLKANEDMKKNTMMMVEQSKVLKTPG---AEKKTKRELF 446
           E+++ +KN G +      ++A  KA E  + NT+ +VE  K         A K   R  F
Sbjct: 154 ELVKIMKNYGEIKDPYRVVVALKKAFEKKELNTLEVVELIKKHVNKAELYANKHPARRYF 213

Query: 445 DALRQEL--ETPVLEKASKAVWELILDNGGLGKEIT------ETVEKVFCRLSGIDMM 296
            ALR  +  E  VLEK    +    L+ GG    IT      + V+KVF  L+ I  +
Sbjct: 214 QALRIAVNNELEVLEKLLSYL-PSYLNKGGKIAIITFHSLEEKIVKKVFRHLASISSL 270

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>TRYP_STREX (P80420) Trypsin-like protease precursor (EC 3.4.21.-)|
          Length = 260

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
 Frame = -3

Query: 535 DMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPVLEKA----------SKAVW 386
           D+  ++ + V+ +KVL+ PG   K K      L + +  P L+ A          + A W
Sbjct: 94  DLNSSSAIKVKSTKVLQAPGYNGKGKDWALIKLAKPINLPTLKIADTKAYDNGTFTVAGW 153

Query: 385 ELILDNGG----LGKEITETVEKVFCRLS-GIDMMPPPASTSGAPQ 263
               + GG    L K     V    C+ S G D++P     +G PQ
Sbjct: 154 GAAREGGGQQRYLLKANVPFVSDASCQSSYGSDLVPSEEICAGLPQ 199

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>MUTS2_CLOTE (Q891U1) MutS2 protein|
          Length = 786

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 30/149 (20%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
 Frame = -3

Query: 616 EVLESLKNDGTVDALRMKIIAQ------LKANEDMKKNTMMMVEQSKVLKTPGAEKKTKR 455
           +++E  KN+   D+L+ + + +      +KA++D ++  M  +E  ++      + + K 
Sbjct: 500 DIIEEAKNNIESDSLKFEALIEKLQSKSIKASDDARRAEMYKLEADRLKD----KYEDKL 555

Query: 454 ELFDALRQELETPVLEKASKAVWELILDNGGLGKEITETVEKVFCRLSGIDMMPPPASTS 275
           ++ +  R++L     E+A K + E   +   + K I E +EK+    +    +       
Sbjct: 556 KIVEETREKLLKGAQEEAKKLIKEAKEEADEILKNIRE-LEKMGYSSTARQKLEEERKKL 614

Query: 274 GAP----QEKQTNMAVEEGQKDMEMDASE 200
            +     +EK+ N+  E+G+K  E++  E
Sbjct: 615 NSKIHKLEEKEENLNKEKGKKIKEINLGE 643

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>PSAB_YERPS (P69966) Chaperone protein psaB precursor|
          Length = 273

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 406 KASKAVWELILDNGGLGKEITETVE 332
           KA++  W++I DNGG+ +E   TV+
Sbjct: 249 KATEVFWQVINDNGGVSREFKSTVQ 273

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>PSAB_YERPE (P69965) Chaperone protein psaB precursor|
          Length = 273

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 406 KASKAVWELILDNGGLGKEITETVE 332
           KA++  W++I DNGG+ +E   TV+
Sbjct: 249 KATEVFWQVINDNGGVSREFKSTVQ 273

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>LGE1_ASHGO (Q75A59) Transcriptional regulatory protein LGE1|
          Length = 244

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 292 PPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSSSRKRPFSDINVKGAGAIPNGGATYQ 113
           PP+S  G+ +    N A    Q   +  A    S+  ++P+     +G+G    GG  Y 
Sbjct: 32  PPSSQGGSARAAPLNGAFHSHQPHSQGYARAEGSNGYRQPYGRGGYRGSGGRYYGGYGYG 91

Query: 112 HDG 104
           H G
Sbjct: 92  HGG 94

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>MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)|
            (CDC42-binding protein kinase gamma) (Myotonic dystrophy
            kinase-related CDC42-binding kinase gamma) (Myotonic
            dystrophy protein kinase-like alpha) (MRCK gamma)
            (DMPK-like gamma
          Length = 1551

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 41/163 (25%), Positives = 65/163 (39%)
 Frame = -3

Query: 616  EVLESLKNDGTVDALRMKIIAQLKANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDAL 437
            E LESL+N GT       +  Q KA    K      +E    L+   AE + K+ L + L
Sbjct: 706  EELESLRNVGTQTLPTRPLDHQWKARRLQKMEASARLELQSALE---AEIRAKQSLQEQL 762

Query: 436  RQELETPVLEKASKAVWELILDNGGLGKEITETVEKVFCRLSGIDMMPPPASTSGAPQEK 257
             Q  E     +A + + E    +  L +E+ E  E++  R  G D  P   STS  P   
Sbjct: 763  TQVQEAQ--RQAERRLQEAEKQSQALQQEVAELREELQARGPG-DARP---STSLIPL-- 814

Query: 256  QTNMAVEEGQKDMEMDASEPSSSSRKRPFSDINVKGAGAIPNG 128
               ++    +KD   D        R    +++  +G  ++  G
Sbjct: 815  ---LSFWNTEKDSAKDPGNSGEGPRSGAEAELRPEGRRSLRMG 854

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>SYNG_MOUSE (Q5SV85) AP1 gamma subunit-binding protein 1 (Gamma-synergin)|
          Length = 1306

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 292 PPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSSSRKRPFS 167
           P A  SGA Q+ QT +      +D++M +S   S  ++ PFS
Sbjct: 587 PSAFASGAAQQTQTQVKTPLNLEDLDMFSSVDCSGEKQVPFS 628

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>GOGA2_HUMAN (Q08379) Golgin subfamily A member 2 (Cis-Golgi matrix protein|
           GM130) (Gm130 autoantigen) (Golgin-95)
          Length = 990

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
 Frame = -3

Query: 580 DALRMKIIAQLKANEDMKKNTMMMVEQSKVLKTPGA-------EKKTKRELFDALRQELE 422
           DALR+++    ++NED+K+    + E+ +VL T  A       E + K E+ + L Q+  
Sbjct: 282 DALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFS 341

Query: 421 T 419
           +
Sbjct: 342 S 342

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>GGA3_MOUSE (Q8BMI3) ADP-ribosylation factor-binding protein GGA3|
           (Golgi-localized, gamma ear-containing, ARF-binding
           protein 3)
          Length = 718

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 313 SGIDMMPPPASTSGAPQEKQTNMA 242
           SGI ++PPP  TSG P+ + ++ A
Sbjct: 347 SGIPILPPPPQTSGPPRSRSSSQA 370

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>SYA_RHOBA (Q7UFH9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 945

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -3

Query: 493 VLKTPGAEKKTKRELFDALRQELETPVLEKASKAVWELILDNGGLGKEITE 341
           V +TPGA     R   D +R++ +TP     + ++ + ++  GGL +++ +
Sbjct: 842 VAETPGANPNIMRGWIDQIRKKSDTPTAVLLASSMNDKVMLVGGLSRDLVD 892

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>RUVA_PROAC (Q6A8K8) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 201

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 23/84 (27%), Positives = 40/84 (47%)
 Frame = -3

Query: 556 AQLKANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPVLEKASKAVWELI 377
           A  + N+DM  +T ++V +   L   G  +   R+ F+ +  +  + V  K + A+   +
Sbjct: 36  ASARINQDMSLHTSLVVREES-LTLYGFVEADDRDAFELV--QTASGVGPKLAAAIMS-V 91

Query: 376 LDNGGLGKEITETVEKVFCRLSGI 305
           LD   L   ITE  +   CR+ GI
Sbjct: 92  LDAAQLATAITEEDDATLCRVPGI 115

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>PGK_KLULA (P14828) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 416

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 362 STIVKYQLPNRF*GFLKNRSFQFLSKSIK 448
           S+IV + LPNR  GFL ++  Q+ +K+++
Sbjct: 172 SSIVGFDLPNRAAGFLLSKELQYFAKALE 200

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>MYS2_DICDI (P08799) Myosin-2 heavy chain, non muscle (Myosin II heavy chain, non|
            muscle)
          Length = 2116

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
 Frame = -3

Query: 592  DGTVDALRMKIIAQLKA-NEDMKKNTMMMVEQSKVLKTPGAEKKTKRELF---DALRQEL 425
            +  +DAL  ++ A+ KA N+ +K+N  +  E  +  K  G  +KTK + F   + L  + 
Sbjct: 1985 EAEIDALTAQVDAEQKAKNQQIKENKKIETELKEYRKKFGESEKTKTKEFLVVEKLETDY 2044

Query: 424  ETPVLEKASKAVWELILDNGGLGKEITE 341
            +    E A +    L ++N  L K ++E
Sbjct: 2045 KRAKKEAADEQQQRLTVEN-DLRKHLSE 2071

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>MYG_CERMN (Q7LZM4) Myoglobin|
          Length = 153

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -3

Query: 568 MKIIAQLKANEDMKKNTMMMVEQ-SKVLKTPGAEKKTKRELFD--ALRQELETPVLEKAS 398
           +K   Q+K +ED+KK+ + ++ Q  K+LK  G  +   + L    A + ++    LE  S
Sbjct: 49  LKTPDQMKGSEDLKKHGVTVLTQLGKILKQKGNHESELKPLAQTHATKHKIPVKYLEFIS 108

Query: 397 KAVWELILD 371
           +A+ ++I +
Sbjct: 109 EAIMKVIAE 117

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>MYG_AETPY (Q7LZM5) Myoglobin|
          Length = 153

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -3

Query: 568 MKIIAQLKANEDMKKNTMMMVEQ-SKVLKTPGAEKKTKRELFD--ALRQELETPVLEKAS 398
           +K   Q+K +ED+KK+ + ++ Q  K+LK  G  +   + L    A + ++    LE  S
Sbjct: 49  LKTPDQMKGSEDLKKHGVTVLTQLGKILKQKGNHESELKPLAQTHATKHKIPVKYLEFIS 108

Query: 397 KAVWELILD 371
           +A+ ++I +
Sbjct: 109 EAIMKVIAE 117

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>SYFA_LEPIN (Q8EYR3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 341

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = -3

Query: 601 LKNDGTVDALRMKIIAQLKANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALR 434
           LKN  ++     K + Q KANE  KK    + E    LK    EK+   E FD LR
Sbjct: 45  LKNVASLSIEEKKTVGQ-KANELSKKLETFISETKTSLKKKLFEKQAASEFFDVLR 99

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>SYFA_LEPIC (Q72M80) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 341

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = -3

Query: 601 LKNDGTVDALRMKIIAQLKANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALR 434
           LKN  ++     K + Q KANE  KK    + E    LK    EK+   E FD LR
Sbjct: 45  LKNVASLSIEEKKTVGQ-KANELSKKLETFISETKTSLKKKLFEKQAASEFFDVLR 99

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>GLNE_CAUCR (Q9A4S7) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 986

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -3

Query: 490 LKTPGAEKKTKRELFDALRQELETPVLEKASKAVWELILDNGGL 359
           L+ P A KKT  ++ + +RQ +E    E+  K  W+L LD GGL
Sbjct: 833 LRRPRAWKKTAADVIE-MRQLMER---ERPGKGDWDLKLDPGGL 872

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>BAG7_YEAST (Q12128) Rho-GTPase-activating protein BAG7|
          Length = 409

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -3

Query: 307 IDMMPPPASTSGAPQEKQTNMAVEEGQKDME 215
           ++++  P+S  G+PQ + ++M+  EG+KD +
Sbjct: 4   MNLLSTPSSEEGSPQNRSSSMSSVEGKKDRD 34

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>LRFN2_MACFA (Q9BE71) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 2 precursor
          Length = 789

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/73 (21%), Positives = 27/73 (36%)
 Frame = -3

Query: 352 EITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSSSRKRP 173
           ++   V  V+ + +G    PP ++ +GAP +    + V     D     +  S SS    
Sbjct: 567 KMAAAVSNVYSQTNGAQPPPPSSAPAGAPPQGPPKVVVRNELLDFTASLARASDSSSSSS 626

Query: 172 FSDINVKGAGAIP 134
                  G G  P
Sbjct: 627 LGSGEAAGLGRAP 639

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>LRFN2_HUMAN (Q9ULH4) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 2 precursor
          Length = 789

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/73 (21%), Positives = 27/73 (36%)
 Frame = -3

Query: 352 EITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSSSRKRP 173
           ++   V  V+ + +G    PP ++ +GAP +    + V     D     +  S SS    
Sbjct: 567 KMAAAVSNVYSQTNGAQPPPPSSAPAGAPPQGPPKVVVRNELLDFTASLARASDSSSSSS 626

Query: 172 FSDINVKGAGAIP 134
                  G G  P
Sbjct: 627 LGSGEAAGLGRAP 639

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>MARK3_HUMAN (P27448) MAP/microtubule affinity-regulating kinase 3 (EC 2.7.11.1)|
           (Cdc25C-associated protein kinase 1) (cTAK1) (C-TAK1)
           (Serine/threonine protein kinase p78) (Ser/Thr protein
           kinase PAR-1) (Protein kinase STK10)
          Length = 776

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
 Frame = -3

Query: 307 IDMMPPPASTSGAPQEKQTNMAVEE--------GQKDMEMDASEPSSSS-----RKRPFS 167
           ID+M     +    QE  + M  +E        G+K  E+DAS+ SSSS     + RP S
Sbjct: 355 IDIMVGMGYSQEEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSS 414

Query: 166 DIN 158
           D+N
Sbjct: 415 DLN 417

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>DPOG1_CHICK (Q92076) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial|
           DNA polymerase catalytic subunit) (Fragment)
          Length = 647

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 259 KQTNMAVEEGQKDMEMDASEPSSSSRKRPFSDINVKG 149
           +Q+ M  E+G  ++  ++S+PS      P++D+N+ G
Sbjct: 122 EQSQMQDEDGLPELVEESSQPSFHHGNGPYNDVNIPG 158

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>MYG_APTFO (P02199) Myoglobin|
          Length = 152

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = -3

Query: 568 MKIIAQLKANEDMKKNTMMMVEQSKVLKTPGAEKKTKRELFDALRQELETPV--LEKASK 395
           +K   +++ +EDMKK+ + ++   ++LK  G  +   + L      + + PV  LE  S+
Sbjct: 49  LKTPDEMRGSEDMKKHGVTVLTLGQILKKKGHHEAELKPLSQTHATKHKVPVKYLEFISE 108

Query: 394 AVWELILDN--GGLGKEITETVEK 329
           A+ ++I        G +  E ++K
Sbjct: 109 AIMKVIAQKHASNFGADAQEAMKK 132

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>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 845

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
 Frame = -3

Query: 553 QLKANEDMKKNTMMMVEQSKVLK-TPGAEKKTKRELFDAL---RQELETPVLEKASKAVW 386
           + KA +D +K    + E+ +V K +P  EK  K+E        +++ E+PV EKA   V 
Sbjct: 618 EAKAGKDEQKEEEKVEEKKEVAKESPKEEKVEKKEEKPKDVPDKKKAESPVKEKA---VE 674

Query: 385 ELILDNGGLGKEITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEEGQKDMEMDA 206
           E+I         IT++V+        + +           QEK    A EEG  + E+  
Sbjct: 675 EMIT--------ITKSVK--------VSLEKDTKEEKPQQQEKVKEKAEEEGGSEEEVGD 718

Query: 205 SEPSSSSRKRPFSDINVKG 149
             P  S ++    DI + G
Sbjct: 719 KSPQESKKE----DIAING 733

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>SYNG_RAT (Q9JKC9) AP1 gamma subunit-binding protein 1 (Gamma-synergin)|
           (Fragment)
          Length = 700

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -3

Query: 325 FCRLSGIDMMPPPASTSGAPQE----KQTNMAVEEGQKDMEMDASEPSSSSRKRPFSDIN 158
           F     +   P PA ++ AP      K +++A + G+ ++  + S P+S   +  F+D  
Sbjct: 552 FSTSKSVSSRPQPAGSAAAPASLASTKASSLADDFGEFNLFGEYSNPASVGEQDDFADFM 611

Query: 157 VKGAGAIPN 131
             G  +IP+
Sbjct: 612 AFGNSSIPS 620


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,544,770
Number of Sequences: 219361
Number of extensions: 1694507
Number of successful extensions: 6822
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 6515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6818
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result