ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC128706.4| Oryza sativa (japonica cultivar-group) chromosome... 60 1e-05
2gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome... 60 1e-05
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 60 1e-05
5emb|CR380957.1| Candida glabrata strain CBS138 chromosome K comp... 46 0.17
6emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 ... 44 0.66
7gb|AF509534.1| Aegilops tauschii NBS-LRR-like gene sequence 44 0.66
8emb|CR855332.7| Zebrafish DNA sequence from clone DKEY-31M14 in ... 42 2.6
9emb|AL355980.6| Human DNA sequence from clone RP11-295L12 on chr... 42 2.6
10emb|AL136322.24| Human DNA sequence from clone RP11-75C23 on chr... 42 2.6
11emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 42 2.6
12gb|AC066616.7| Homo sapiens chromosome 15 clone RP11-925D8 map 1... 42 2.6
13gb|AC174350.4| Medicago truncatula clone mth2-3g18, complete seq... 42 2.6
14gb|AC026774.7| Homo sapiens chromosome 5 clone CTC-235G5, comple... 42 2.6
15emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in ... 42 2.6
16emb|BX296532.7| Zebrafish DNA sequence from clone CH211-281C19 i... 42 2.6
17gb|AC090066.2| Homo sapiens chromosome 5 clone CTC-277N16, compl... 42 2.6
18emb|BX465859.13| Zebrafish DNA sequence from clone DKEYP-67G10 i... 42 2.6
19dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
20emb|BX784022.6| Zebrafish DNA sequence from clone CH211-152C8 in... 42 2.6
21gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355... 42 2.6
22dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
23emb|BX248111.7| Zebrafish DNA sequence from clone DKEY-22L11 in ... 42 2.6
24emb|CT025579.12| Mouse DNA sequence from clone RP24-189A10 on ch... 42 2.6
25emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in... 42 2.6
26gb|AC156797.2| Mus musculus BAC clone RP24-88A16 from chromosome... 42 2.6

>gb|AC128706.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0063F24,
              complete sequence
          Length = 152738

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 604    tgcatggctcctcgtgcaaactccaactccatggtgtcactc 645
              |||||||||||| |||||||||| | ||||||||||||||||
Sbjct: 123162 tgcatggctccttgtgcaaactcgatctccatggtgtcactc 123203



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>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0041I05, complete sequence
          Length = 148785

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 604   tgcatggctcctcgtgcaaactccaactccatggtgtcactc 645
             |||||||||||| |||||||||| | ||||||||||||||||
Sbjct: 20337 tgcatggctccttgtgcaaactcgatctccatggtgtcactc 20378



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 604      tgcatggctcctcgtgcaaactccaactccatggtgtcactc 645
                |||||||||||| |||||||||| | ||||||||||||||||
Sbjct: 19614841 tgcatggctccttgtgcaaactcgatctccatggtgtcactc 19614882



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 604      tgcatggctcctcgtgcaaactccaactccatggtgtcactc 645
                |||||||||||| |||||||||| | ||||||||||||||||
Sbjct: 19900700 tgcatggctccttgtgcaaactcgatctccatggtgtcactc 19900741



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>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence
          Length = 1302002

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 525    taaaccaaatacaaaatcaccaa 547
              |||||||||||||||||||||||
Sbjct: 809016 taaaccaaatacaaaatcaccaa 808994



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>emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 on chromosome 6p24.1-25.3
            Contains a novel gene, complete sequence
          Length = 131819

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 121  acaaaaaatcaatatgatggaaaata 146
            ||||||||||||||||||||| ||||
Sbjct: 3210 acaaaaaatcaatatgatggataata 3235



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>gb|AF509534.1| Aegilops tauschii NBS-LRR-like gene sequence
          Length = 5171

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 655  aaccttgttagacaccgaaatggatagccactgtcaat 692
            |||||||| ||||||||||| ||| | |||||||||||
Sbjct: 3848 aaccttgtcagacaccgaaagggacaaccactgtcaat 3811



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>emb|CR855332.7| Zebrafish DNA sequence from clone DKEY-31M14 in linkage group 15,
              complete sequence
          Length = 212455

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     aacataaaaaattataataat 90
              |||||||||||||||||||||
Sbjct: 111277 aacataaaaaattataataat 111297



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>emb|AL355980.6| Human DNA sequence from clone RP11-295L12 on chromosome 13, complete
             sequence
          Length = 191856

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 123   aaaaaatcaatatgatggaaaataa 147
             ||||||| |||||||||||||||||
Sbjct: 70333 aaaaaataaatatgatggaaaataa 70357



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>emb|AL136322.24| Human DNA sequence from clone RP11-75C23 on chromosome 1q31.2-32.1
             Contains part of the CRB1 gene for crumbs homolog 1
             (Drosophila), complete sequence
          Length = 55954

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 311   ataattctaccctctgcttct 331
             |||||||||||||||||||||
Sbjct: 34894 ataattctaccctctgcttct 34874



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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     aacataaaaaattataataat 90
              |||||||||||||||||||||
Sbjct: 811545 aacataaaaaattataataat 811565



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>gb|AC066616.7| Homo sapiens chromosome 15 clone RP11-925D8 map 15q21.3, complete
              sequence
          Length = 209779

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 83     ataataatctatggtgtattttcag 107
              |||| ||||||||||||||||||||
Sbjct: 188122 ataaaaatctatggtgtattttcag 188146



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>gb|AC174350.4| Medicago truncatula clone mth2-3g18, complete sequence
          Length = 77292

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 434   caactacatttctcacatttc 454
             |||||||||||||||||||||
Sbjct: 40302 caactacatttctcacatttc 40322



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>gb|AC026774.7| Homo sapiens chromosome 5 clone CTC-235G5, complete sequence
          Length = 108451

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   atatgatggaaaataacagtt 152
             |||||||||||||||||||||
Sbjct: 29430 atatgatggaaaataacagtt 29410



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>emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in linkage group 14, complete
              sequence
          Length = 243729

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 75     aaaaaattataataatctatg 95
              |||||||||||||||||||||
Sbjct: 113925 aaaaaattataataatctatg 113905



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>emb|BX296532.7| Zebrafish DNA sequence from clone CH211-281C19 in linkage group 24,
             complete sequence
          Length = 155029

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    aacataaaaaattataataat 90
             |||||||||||||||||||||
Sbjct: 28311 aacataaaaaattataataat 28331



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>gb|AC090066.2| Homo sapiens chromosome 5 clone CTC-277N16, complete sequence
          Length = 89420

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   atatgatggaaaataacagtt 152
             |||||||||||||||||||||
Sbjct: 29430 atatgatggaaaataacagtt 29410



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>emb|BX465859.13| Zebrafish DNA sequence from clone DKEYP-67G10 in linkage group 4,
             complete sequence
          Length = 214205

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    taacataaaaaattataataa 89
             |||||||||||||||||||||
Sbjct: 50385 taacataaaaaattataataa 50365



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 74       taaaaaattataataatctat 94
                |||||||||||||||||||||
Sbjct: 19085674 taaaaaattataataatctat 19085654



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>emb|BX784022.6| Zebrafish DNA sequence from clone CH211-152C8 in linkage group 18,
             complete sequence
          Length = 153244

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    aacataaaaaattataataat 90
             |||||||||||||||||||||
Sbjct: 28099 aacataaaaaattataataat 28119



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>gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355N15 map 15q21.3, complete
             sequence
          Length = 173386

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 83    ataataatctatggtgtattttcag 107
             |||| ||||||||||||||||||||
Sbjct: 38345 ataaaaatctatggtgtattttcag 38369



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>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0702H08
          Length = 166899

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 74    taaaaaattataataatctat 94
             |||||||||||||||||||||
Sbjct: 51091 taaaaaattataataatctat 51071



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>emb|BX248111.7| Zebrafish DNA sequence from clone DKEY-22L11 in linkage group 4,
             complete sequence
          Length = 185023

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    taacataaaaaattataataa 89
             |||||||||||||||||||||
Sbjct: 40379 taacataaaaaattataataa 40399



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>emb|CT025579.12| Mouse DNA sequence from clone RP24-189A10 on chromosome 14, complete
             sequence
          Length = 173961

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 321   cctctgcttcttcagctctaa 341
             |||||||||||||||||||||
Sbjct: 48300 cctctgcttcttcagctctaa 48320



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>emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in linkage group 12,
              complete sequence
          Length = 211571

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 9      ttaataaatgttgacaaaaaa 29
              |||||||||||||||||||||
Sbjct: 153169 ttaataaatgttgacaaaaaa 153149



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>gb|AC156797.2| Mus musculus BAC clone RP24-88A16 from chromosome 14, complete
            sequence
          Length = 166341

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 321  cctctgcttcttcagctctaa 341
            |||||||||||||||||||||
Sbjct: 8110 cctctgcttcttcagctctaa 8130


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9,200,844
Number of Sequences: 3902068
Number of extensions: 9200844
Number of successful extensions: 203800
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 203481
Number of HSP's gapped (non-prelim): 319
length of query: 749
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 726
effective length of database: 17,143,297,704
effective search space: 12446034133104
effective search space used: 12446034133104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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